Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987196.1:9398497-9405429[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9.5e-06 0.00044 20.7 1.9 2 21 174 193 173 194 0.94

2 20 0.0021 0.096 13.3 3.3 1 23 371 394 371 394 0.93

3 20 5.2e-05 0.0024 18.4 0.1 1 21 402 424 402 425 0.97

4 20 0.011 0.53 11.0 0.4 1 23 430 453 430 453 0.91

5 20 0.059 2.7 8.8 2.6 3 23 533 553 533 553 0.98

6 20 0.056 2.6 8.8 2.0 1 23 568 589 568 589 0.97

7 20 0.18 8.3 7.2 2.3 2 23 593 614 592 614 0.92

8 20 0.019 0.89 10.3 0.1 2 23 645 666 644 666 0.96

9 20 0.09 4.2 8.2 2.2 1 23 680 703 680 703 0.93

10 20 0.00091 0.042 14.5 2.5 2 23 720 741 719 741 0.98

11 20 8.9e-07 4.1e-05 23.9 6.2 1 23 787 809 787 809 0.98

12 20 0.099 4.6 8.1 0.5 3 23 832 853 832 853 0.91

13 20 6.3e-06 0.00029 21.3 1.9 1 23 872 894 872 894 0.97

14 20 0.054 2.5 8.9 0.1 3 23 912 933 910 933 0.91

15 20 0.014 0.65 10.7 0.3 1 23 948 970 948 970 0.92

16 20 1.3 62 4.5 0.0 1 23 1004 1027 1004 1027 0.94

17 20 0.19 8.7 7.2 0.6 3 23 1038 1058 1037 1058 0.91

18 20 0.0028 0.13 12.9 1.3 1 23 1092 1115 1092 1115 0.96

19 20 5.5e-05 0.0025 18.3 2.4 1 23 1126 1148 1126 1148 0.98

20 20 0.0062 0.28 11.9 0.3 1 23 1169 1192 1169 1192 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9.5e-06	0.00044	20.7	1.9	2	21	174	193	173	194	0.94
2	20	0.0021	0.096	13.3	3.3	1	23	371	394	371	394	0.93
3	20	5.2e-05	0.0024	18.4	0.1	1	21	402	424	402	425	0.97
4	20	0.011	0.53	11.0	0.4	1	23	430	453	430	453	0.91
5	20	0.059	2.7	8.8	2.6	3	23	533	553	533	553	0.98
6	20	0.056	2.6	8.8	2.0	1	23	568	589	568	589	0.97
7	20	0.18	8.3	7.2	2.3	2	23	593	614	592	614	0.92
8	20	0.019	0.89	10.3	0.1	2	23	645	666	644	666	0.96
9	20	0.09	4.2	8.2	2.2	1	23	680	703	680	703	0.93
10	20	0.00091	0.042	14.5	2.5	2	23	720	741	719	741	0.98
11	20	8.9e-07	4.1e-05	23.9	6.2	1	23	787	809	787	809	0.98
12	20	0.099	4.6	8.1	0.5	3	23	832	853	832	853	0.91
13	20	6.3e-06	0.00029	21.3	1.9	1	23	872	894	872	894	0.97
14	20	0.054	2.5	8.9	0.1	3	23	912	933	910	933	0.91
15	20	0.014	0.65	10.7	0.3	1	23	948	970	948	970	0.92
16	20	1.3	62	4.5	0.0	1	23	1004	1027	1004	1027	0.94
17	20	0.19	8.7	7.2	0.6	3	23	1038	1058	1037	1058	0.91
18	20	0.0028	0.13	12.9	1.3	1	23	1092	1115	1092	1115	0.96
19	20	5.5e-05	0.0025	18.3	2.4	1	23	1126	1148	1126	1148	0.98
20	20	0.0062	0.28	11.9	0.3	1	23	1169	1192	1169	1192	0.93

Sequence Information

Coding Sequence: ATGTCGGACATCCAATTTGGAAATTACAGCTCTTGCTGCAGATTGTGTCTCTCCGAAAGACCAGAGTTGTTAGATAATATTTTTGGTGATGTTCGAAAGGATAGCTTATTGCCGAAGAAGATACAAGCTCTCTTCTCAATTGAGGTACATTCTACTGATAAGAAATCAACTTTAATATGCACATCTTGTGTTGAAAAAATCGACGGATTTGTtgcatttaagaaaatttgttCTGAAAATCAATATAGACTCGACAGATGGATTGAAAATTGGCGAGCCTCCGAAAATAGCATAGGTGATCAGAGTTTTCAAATTAAAGACGAAGTGCCGGATATATATCCAAATGAAACAATCAGAAATGAGTCTCAATCTCAGCCTTTAGAAGAATCTCCAGTTATACAAGTAAAAGATGAACCTCTCGAAATTGAGGATGAAATGCCTTCTTTATTACCTCAAGTAGACCCCCTTCACATAGAATCTCACGCCGAAAATGACACTGAAAGCAACAGTGATGAAATATCATGTGAACATTGCAACAAAAACTTTGccaataaatataatttacgCCGGCATTATAGATATTGTCCAATTCTAAAAGACAAGGGTACTAATAAAACTATTCCTGCTGCAAATGatgatATCGTGACTGAAAATGATTCGGCCATTGAACCCCAAAGTAACAAGAAAACATCAAAATCAGACAAAAATACCGATGAAGATCctcaaaaaattgaatttgcaGCTGGTCTTAAATTAGTTGCCCGCGACGCTACGAATACATTAAAGTTAGCAGACAACCTTACCAAAATGGAGATTATGTACTTGGAAAAGGCAAAATCTATGATGCtaatgtttaaaacattaagaTGCACTTGTCACAACAATAAATATTCAGAACATAAAACCCTATATAGTCATCTAAGAAAATGCAATACCTTGCCATTATTTCCGGGCTACACTTGCTTTAACTGTATGATATTCTTTAATGATAGATCTGCATCTCGCAAGCACAGCTACAAAAATGCATGTCCGTATAAAAAACACGAATCGCTTATGACGTtgtccaatttaaaaaagcgaAGTGATCATAAAACTCGTATTTATCAATGCTTTGAATGCAAGGATTGTGGATTTGATTTTACGTTTCATCATGATTTGCTAAGACATTACGAAGAGGTGCATTGTGAAGAAGAAGAGGCCCCCTTTAAGTGTCCTTTGGAAGAATGTGATAAAGAGTTTAGCACTGCTGAGGAATATAAGGCTCATATCCGTGATTGCCTTACTCAATACTATTGCGACATTTGTTTTGAGTCACTAAAAACCCAGgaagattttattaaacacGCAGAGGAGAAACATGACAATTCATCCGACACTAAACTACACAACCCTAAACCAGGCGTTGttgctgctaaaaaacgtCCCCACTCCGAGGCAACTCCGCCCAAAATGGAAAGGCCAGTGCGTCTACGTCGCAGCTCCATGTACCAAAAAGCCCCAGAACTCGACCCTGAGGAAAACGACGAAGTGCCGGAAACTGCTAAAGTTCCAAATCCTGCTATTGTTAATGGGCCAAAACCTAAAGGTCCAGTCGGTTGCACTGCTTGCGGCAAAATGTACGCGTCGTATCACAGCATGTTACGTCACTTTAAAACACATGTCCCAAGCGAACTAGAAGCCCCAGTAAGCGATGACACTGTTTATTGCTGCCCTGATTGCGGCGCCATGTGTAAGGCATCAGATTGGGAGCGACACAAACAGTCCCACCCCAAAAAGAAGTGTATTGAGTGCAATAAGGTATTCCAATTCCAGCACGAGTTAGACCAACACAGAAGCGTGCATCTTAACCTCAAAGTTTACAGAGACTCTAAAACCAAATCATATAAAAGCACGATGTTAAGTCCGAATTCAGAAAATGGTGTTAATAAACTGACTTGCAGCGTGTGCAACGCTGTTTTTAAATCGGTTGCCGAAATTGCTAAGCATAAACTGACTCATGAAAGCAACGGTAGAGCCAATGGCGATGAGGCGGCTAAGTATCATTGCGCAGACTGCAACAAAAGTTATGCGTCATACCAAGGCTTCTGGGAGCACAATAAAAACTTCCATGGACCTAATGAAACGCCTAAAGCCAGGGAAACGGTAAAGTACCCCAAAAAATGCGACAAATGCTCGAAAACTCTTGCTACCTCGTCCAGTTATTCCAAACATCAAAAGATTCACAAACGATTGGAGGAAGCTCTTCACAACCAAGGCAATCCTCCTACTCTTTCGCCCAATAATCAAATAGAGGAAAAAGCCAAGCCCATTGTAAAGCAAAGGAAATCGACTGCAGCACGTGAAGAGTCTGAGGATTACCACAcgtgcaaaaaatgttttaaagtatTCTCCAATAAATCAAATCTTCGGAATCATATGAAAATGCACGGAATTGTATCGCCCCCAAATAAATCTAGTTCGGCTAAACAGTTAAAAAGCCCTAAGAAAGTGTGGTGCGATTCGTGTCACATTGCTTTTAACAGTCCAGAGCTTTTGCAAGAGCATAAAGACCAAGAGCACGACGAGATGCCAGATTTGGTAAGCGTTATAGATGAATTCAACAACAAATCACTGTTCACGTGTGATATTTGCGTTAAAACCTTCTCCTCAAAGTCAGCGCTTAAAAAACACAAAGACAGGCACGCGGAAGAAGCATCCAAAGGAGCACCATTGAAAAAGGTTATAAAGATTGCTTGTAAATACTGTAAAATATTATTCGACAGTGAACCGGCTCTAGAAAAGCACATGTTTGACGAACACGACGAGAAGAAGCAGACCAAAGACAAAGCCAAAGGTGATAAGTTCCCGTGCAGGGTGTGTAAAAAGGTGTTCCACTCAGCCACTGCACTGAACGGCCACGTTGGTTGGCACAACCGAAGCAACACTGAGAAAAACGTCAAAAAGCAGGAAACTATTTTCCGAAAAATGGTCAATAATATGTCGAAACCGACGCCAATGACTGCGCCCCAGTATCAGTGCACCACTTGCCTTATTGAGCTACCGAACGACACAGCGCTGCAGATACACATTTTGGAGAAGCACAGAAACGTTAACGCTTTCGCTATCCCTCGTTGCGTGCCCTGCAACCAGGAATTTAAAACCCAGGATGAATATGACACCCATAAGCGTCTGCACGAGCTTGTCGAAAGTCAGAAACTGTCCTTAAAGCAAGGGAGTAACAGCTTTGAAAGACCACCAGAAAAGACTGCGTACAAACGAAATCCATCAAAGAGCTTTCCGTGCCAGTACTGCCCATCTAAGTTTAGTAGAGGCGACACTTTAAAACAGCATGAAAGACAGTTTCATGGCAACGAACTGACAGTGAAGACTCCTGAATTCCATTGCAATCAATGCGATCGTGTTTTTGATAAGCAAACGTCATTGACTGTGCACTTAAAAGTTCATGAAACGTCCAAGGCAAAGATGAAGCAAACTGTTCAAGTGGTAACACAACCAAAAGCGCTCTTTTTCTGTTCCATTTGCAATATGGGCTTTAATTTACCAAAGGATCTTAGAACCCACACTATAAATGCGCATCCTTTTTGA
Protein Sequence: MSDIQFGNYSSCCRLCLSERPELLDNIFGDVRKDSLLPKKIQALFSIEVHSTDKKSTLICTSCVEKIDGFVAFKKICSENQYRLDRWIENWRASENSIGDQSFQIKDEVPDIYPNETIRNESQSQPLEESPVIQVKDEPLEIEDEMPSLLPQVDPLHIESHAENDTESNSDEISCEHCNKNFANKYNLRRHYRYCPILKDKGTNKTIPAANDDIVTENDSAIEPQSNKKTSKSDKNTDEDPQKIEFAAGLKLVARDATNTLKLADNLTKMEIMYLEKAKSMMLMFKTLRCTCHNNKYSEHKTLYSHLRKCNTLPLFPGYTCFNCMIFFNDRSASRKHSYKNACPYKKHESLMTLSNLKKRSDHKTRIYQCFECKDCGFDFTFHHDLLRHYEEVHCEEEEAPFKCPLEECDKEFSTAEEYKAHIRDCLTQYYCDICFESLKTQEDFIKHAEEKHDNSSDTKLHNPKPGVVAAKKRPHSEATPPKMERPVRLRRSSMYQKAPELDPEENDEVPETAKVPNPAIVNGPKPKGPVGCTACGKMYASYHSMLRHFKTHVPSELEAPVSDDTVYCCPDCGAMCKASDWERHKQSHPKKKCIECNKVFQFQHELDQHRSVHLNLKVYRDSKTKSYKSTMLSPNSENGVNKLTCSVCNAVFKSVAEIAKHKLTHESNGRANGDEAAKYHCADCNKSYASYQGFWEHNKNFHGPNETPKARETVKYPKKCDKCSKTLATSSSYSKHQKIHKRLEEALHNQGNPPTLSPNNQIEEKAKPIVKQRKSTAAREESEDYHTCKKCFKVFSNKSNLRNHMKMHGIVSPPNKSSSAKQLKSPKKVWCDSCHIAFNSPELLQEHKDQEHDEMPDLVSVIDEFNNKSLFTCDICVKTFSSKSALKKHKDRHAEEASKGAPLKKVIKIACKYCKILFDSEPALEKHMFDEHDEKKQTKDKAKGDKFPCRVCKKVFHSATALNGHVGWHNRSNTEKNVKKQETIFRKMVNNMSKPTPMTAPQYQCTTCLIELPNDTALQIHILEKHRNVNAFAIPRCVPCNQEFKTQDEYDTHKRLHELVESQKLSLKQGSNSFERPPEKTAYKRNPSKSFPCQYCPSKFSRGDTLKQHERQFHGNELTVKTPEFHCNQCDRVFDKQTSLTVHLKVHETSKAKMKQTVQVVTQPKALFFCSICNMGFNLPKDLRTHTINAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -