Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987193.1:1228346-1243372[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.003 0.14 12.8 0.1 3 19 19 35 18 38 0.93

2 23 0.016 0.73 10.6 0.3 3 21 68 86 67 87 0.94

3 23 2.5 1.1e+02 3.7 6.1 2 20 95 113 95 115 0.91

4 23 0.00064 0.029 15.0 0.4 1 23 603 625 603 625 0.98

5 23 0.0022 0.1 13.3 7.2 1 21 631 651 631 654 0.89

6 23 0.0062 0.29 11.8 0.7 3 23 663 684 662 684 0.98

7 23 6.7e-05 0.0031 18.0 0.4 3 23 692 713 691 713 0.97

8 23 4 1.8e+02 3.0 0.9 3 23 730 749 727 749 0.94

9 23 0.001 0.047 14.3 0.7 1 23 755 777 755 777 0.97

10 23 3.8e-06 0.00018 21.9 5.7 1 23 783 805 783 805 0.99

11 23 0.0028 0.13 12.9 7.4 1 23 811 833 811 833 0.97

12 23 2.7e-05 0.0013 19.3 3.2 1 23 1059 1081 1059 1081 0.98

13 23 0.00026 0.012 16.2 4.4 1 23 1087 1110 1087 1110 0.95

14 23 0.097 4.5 8.1 1.7 3 23 1119 1140 1118 1140 0.96

15 23 0.008 0.37 11.5 1.2 3 23 1148 1169 1146 1169 0.91

16 23 0.032 1.5 9.6 3.6 2 21 1182 1201 1181 1204 0.95

17 23 0.47 22 5.9 5.1 1 23 1212 1235 1212 1235 0.95

18 23 0.058 2.7 8.8 3.5 2 23 1248 1270 1247 1270 0.97

19 23 7.8 3.6e+02 2.1 0.2 3 23 1275 1294 1274 1294 0.89

20 23 0.00015 0.0071 16.9 1.2 1 23 1300 1322 1300 1322 0.97

21 23 2.1e-05 0.00097 19.6 3.2 1 23 1328 1350 1328 1350 0.99

22 23 0.00089 0.041 14.5 9.0 1 23 1356 1378 1356 1378 0.98

23 23 0.00016 0.0075 16.8 5.4 1 23 1384 1406 1384 1406 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.003	0.14	12.8	0.1	3	19	19	35	18	38	0.93
2	23	0.016	0.73	10.6	0.3	3	21	68	86	67	87	0.94
3	23	2.5	1.1e+02	3.7	6.1	2	20	95	113	95	115	0.91
4	23	0.00064	0.029	15.0	0.4	1	23	603	625	603	625	0.98
5	23	0.0022	0.1	13.3	7.2	1	21	631	651	631	654	0.89
6	23	0.0062	0.29	11.8	0.7	3	23	663	684	662	684	0.98
7	23	6.7e-05	0.0031	18.0	0.4	3	23	692	713	691	713	0.97
8	23	4	1.8e+02	3.0	0.9	3	23	730	749	727	749	0.94
9	23	0.001	0.047	14.3	0.7	1	23	755	777	755	777	0.97
10	23	3.8e-06	0.00018	21.9	5.7	1	23	783	805	783	805	0.99
11	23	0.0028	0.13	12.9	7.4	1	23	811	833	811	833	0.97
12	23	2.7e-05	0.0013	19.3	3.2	1	23	1059	1081	1059	1081	0.98
13	23	0.00026	0.012	16.2	4.4	1	23	1087	1110	1087	1110	0.95
14	23	0.097	4.5	8.1	1.7	3	23	1119	1140	1118	1140	0.96
15	23	0.008	0.37	11.5	1.2	3	23	1148	1169	1146	1169	0.91
16	23	0.032	1.5	9.6	3.6	2	21	1182	1201	1181	1204	0.95
17	23	0.47	22	5.9	5.1	1	23	1212	1235	1212	1235	0.95
18	23	0.058	2.7	8.8	3.5	2	23	1248	1270	1247	1270	0.97
19	23	7.8	3.6e+02	2.1	0.2	3	23	1275	1294	1274	1294	0.89
20	23	0.00015	0.0071	16.9	1.2	1	23	1300	1322	1300	1322	0.97
21	23	2.1e-05	0.00097	19.6	3.2	1	23	1328	1350	1328	1350	0.99
22	23	0.00089	0.041	14.5	9.0	1	23	1356	1378	1356	1378	0.98
23	23	0.00016	0.0075	16.8	5.4	1	23	1384	1406	1384	1406	0.98

Sequence Information

Coding Sequence: atgGATCAATTGTTTAACGATCAAGCCGACTTTGAACGAATTATTACGAAAATTTGTGGGACATGtggtaaagtattttccaacaCATACAACCGACAGCGTCATGAAGCCGTATGCCAACCTTCAAGTTCAGTTTCTAAAAGACATCATGAAGATTTGTTTCCTGATCAAGAACAATTTGAacgtgaaattgcaaaaatatgttcaaaatGTGGTAAAGTCTTTCTCAACGCGTCTAATCGCACAAGACATGAAAGATTGTGTAATGCAATGTATAATGGTACTTGTCAACATTGTCAACATACCTTTACCAACCTACATAACCACAAGCGGCATGAACAAGTGTGTGGTCAACCACAAATCAAAAATCGACGTGTAGAACCGCCCGTTGATCAGCTGTTAGCCACTATACCCAATTCCCAAGGAATAGCACCATATGAAACAGCGTTTGCTAGTCGCCTAAAGTCATTTTTTCTACGATCCGATACGAATTTGGACATGACgcaatttttattgtcaatAAAGCAACAGGTGCTTAATTTGTTGGAGATGGAACTAAATAGAAATGGagccataaaatttaatattctcGTTGACTGTTTACTTCATAATCAACTCAGTGAAGAACAAAATGCATCCTTTAAGGCCAAAAATGTAGTGGTGGTTAGAGATTCAAACTTAGATGAATTAGTTAACACTTCCTTTGAAAAACTGAAGAGGGAATTAGAGGagacacagttaaaaaaaagtggatgGGTATTATTGGCTGTGGATGGACTACGacttcgcataaacaaatacaGTCCTCTTGGTGGTAGCACATATATACCTTTACCAAAAGCAATTGCGGACAAAAAGGCTTGcataaatgttgaaaataatgatCAATATTGCTTTGAATATTCAATTTTAGCAAAGTTAGTTACCTCAAGAAACCCACAACGAGTTACTAAGTATACCAATTTAGTTCACCGCTACAACTTCGACTGTGTAACTTTTCCAACACCCCTTGaagacatcaaaaaatttgaaaaagtaaacaatatttcaatcaatgtatttggcgtggaaaaagatacagtttaccctctaaaaatttgtaatgaacAGTTGGAAGATCATAGGGATTTACTTCTTATTTCGAATAAAAGTGGCAACCTGCATCATTATGTAtacataaaaaactttgaacgtCTCGTACACACTCAACTTACCTTAAACCACGGTCGATTACTGACGAGAAAAACTCGTGGTTGTGATGCTAACCTTTTGGATGTGTACACTAAAATTACTTCACGAAAGCTGCAGGATTGGAATAATATGCCTAAGATAATTTGCCAAGGATGCACATCTCAGTTAACAACCATAAAGAGCTTTATCCAGAAGTGTGTCGACACGGATGAAAAGTTTAATAGTATAGCACAAGAAGTGTTTAGCAAGGAAAATGAAATTAAGTTGGAGAGTCTTAAAGTTGAAGGAGAAGAAACAGAAGTTAACGAAATTCATGTGTTAGATGGCGAAAAATTGGAAATAAATAACCCAGAAATCAAAGATGAAAGCGACATTCCTGCCGATGAATGGATAGATCCCAGTCCGTTTTTGGAAACACAAGTAATAACCACACCAAACAAAACAGAGAAACCCAAAACTAAACAAGAAAATGCCTCTAAAAAGCccatcaagaaaaaaaaaccaacagTTACCTGCTTTACATGTaaactgaaatttaaaataggagCAAGAGGCGAAGCTCGCAAAAATCTAGAAGAGCACTACAAAAACAGTGAGGGGTGCAAGCCCGAAGAGTTTAAATGCACAGTATGTCCCAGAGTATGCAGTACTGAAGCAGTTTTGAGACTTCACATGGATGTGCATTCAACTGAGGCTAAATTTAAATGCGAAGAATGTgggatttgttttaaacaagaGTTTAATCTTAAACGACATTGTAAAAACAAACATAGCACTGAACCAGCTAGCGTGTTGTGCGAATTTTGTCCAAgaaAATTTAACCTTTTAGAAAGCCTGCAGGAACATTTGCGCAAGACCCATCCTGATGCACTAAACGTTGCTTGTACCTTATGCCCTAGAAAATTCGTAAGCAAGGTGGGCCTAAAACGTCATATGCAGAGTCTACACCCAACCGGACAACCAGGCTTTACTTTACGATCCAAAAAATGTACTTTATGCAACATATGCGGAGTTAAAGTCGTAAATAGTGTACTAAAATTGCACCTTAACAAACACCAAGGCATAAAACCGTTTAAATGTGACCGCTGCCCCAAgaagtattttacaaaaattgaacTGCAGGTTCACGTTAACGGGCATTTGGGCATTAAGCCCTACAAATGTACTCACTGTGAGTTAGCGTTTAATACCAACTCTAATCTTCATAGACACTTAAGAACACACACGGGAAAGAAACCCCATGAATGTCTGCACTGTCATAAATATTTCGGTACGAAGGAAAATCTTAAACAACACACTATAACGCATACAGGGGAACGACCCCATACGAGAAAAACTCAGCAGAGTAGTTTTGACGCCAATCTTTTGGATGTTTACACCAAAATTACTTCACGAAAGCTGCAGGACTGGAATAACATGCCTAAAATAATTTGCCAAAGATGCTCAACTCAGTTAACAAGCATaaacgattttattttaaaatgtgtcgAAGCGGATGAAAAGTTTAACAACATAGCGCAAGCAATTCTAAATCTGAGCAatgaaaatgaaattaatttaagtaGCCTTAAGGTTGAAGGTGAAGTTATTGAAGTAATCGAGGttcATGTCTTGGATGACGAAGAATTGGAAATAAATAGCGCAgacataaaagataaaataaacatttctgTCGATGATTGGAAGGATTCTAGTTCTTTTCTTGAATCAACTGAAATAAAAACCACACTAAATAAGACCGAAGAAAATAAAACTCTACAAGAAAATGCCTTCAAAAGGCCTCAACGcacaaacaaaagaaaaaagcTTAACGATGAAGTAAAAGACCCTCCAAAAAAGCCCAGatgcaaaaacaaaagaatataTCTTTCACCCGTAACGTGTTTTACATgcaaaatgaaatttaaaataggggCACCAGGCAAGGCGCGTCAAGAGCTTGAGGAACACTACAAAACCAGTGAGGGCTGTAAACCCCAAGAGTTTAAATGTCCACATTGTCCGAGAATGTGCAGAAAAAAATCGGATTTGGAGCTTCATATGGATGTCCATTCAACAGATCTTAAATATAAGTGCAAAGAATGTGAATTGTGTTTTAAACAAGAATCTAGTCTTATACGACATTTTAATAACAAACATAACGCTAATGCAGAACCTTCACTGTGCGAATTTTGTCCCAAAAGttaccttaatttaagaaatctacaggcTCATTTACAACAATGTCACCCAGAAAAACTAAACATAATCTGCAATTTATGCcataaaaaatgcatcaacGAAAGGGGGCTCCAACGCCACATTGCAGCCATTCACAAAGACAAAAAGAAAGTcgaaaataaacaagaaatcACATGTAATTTAtgctcaaaaaaatttaaaaacacagtaGGCCTCCATTTGCACATGAGATGCGTGCATTTAGATGGAACTAAAATATACCATAACTGTAATTTATGCcctaaaaaattcttaaatgaACTGTGTCTAAAACGGCATATGGACAAAAATCATCCCAACGGAGAAGCGGACACAAAAAGCGTGTGTATTAAATGTACTTTCTGTCCTAAAATGTACAACAGCGTTAAGTATCTCAAGTGCCACATGAGAAAAATCCATTCGTTTAAGTTGTGTAGCATATGCGGTATTAAAGTCAGGTCCATTGTTTTCCAACTTCACCTTAACAAACACAAAGGAATCAGACCTTTTGAATGCAATACCTGCTCTAAAAAGTTCTACACTAAAGCAGAACTAAAAATGCACGGTAATATACATTTAAGCATCAAACCCTTCAAATGTAATAAATGTACGGCGACTTTTTCGGTAAGCTCCAGTCTTTATAGACATTATAGGACGCACACCGGAGAAAAACCATTCGAATGTCCGCACTGTCATAAATGTTTTGGTAGAAGGCAACATCTTGTCCAACATAGTCGCATCCATACAGGGGAACGGCCTTTTGAGTGTCCCCACTGTGATGAAACCTTCACTTTTCTTTCTACTTTATGTCTCCACAAGAAAACACacattaaaaatgaatttgttacTGATCAGCAAAACTAG
Protein Sequence: MDQLFNDQADFERIITKICGTCGKVFSNTYNRQRHEAVCQPSSSVSKRHHEDLFPDQEQFEREIAKICSKCGKVFLNASNRTRHERLCNAMYNGTCQHCQHTFTNLHNHKRHEQVCGQPQIKNRRVEPPVDQLLATIPNSQGIAPYETAFASRLKSFFLRSDTNLDMTQFLLSIKQQVLNLLEMELNRNGAIKFNILVDCLLHNQLSEEQNASFKAKNVVVVRDSNLDELVNTSFEKLKRELEETQLKKSGWVLLAVDGLRLRINKYSPLGGSTYIPLPKAIADKKACINVENNDQYCFEYSILAKLVTSRNPQRVTKYTNLVHRYNFDCVTFPTPLEDIKKFEKVNNISINVFGVEKDTVYPLKICNEQLEDHRDLLLISNKSGNLHHYVYIKNFERLVHTQLTLNHGRLLTRKTRGCDANLLDVYTKITSRKLQDWNNMPKIICQGCTSQLTTIKSFIQKCVDTDEKFNSIAQEVFSKENEIKLESLKVEGEETEVNEIHVLDGEKLEINNPEIKDESDIPADEWIDPSPFLETQVITTPNKTEKPKTKQENASKKPIKKKKPTVTCFTCKLKFKIGARGEARKNLEEHYKNSEGCKPEEFKCTVCPRVCSTEAVLRLHMDVHSTEAKFKCEECGICFKQEFNLKRHCKNKHSTEPASVLCEFCPRKFNLLESLQEHLRKTHPDALNVACTLCPRKFVSKVGLKRHMQSLHPTGQPGFTLRSKKCTLCNICGVKVVNSVLKLHLNKHQGIKPFKCDRCPKKYFTKIELQVHVNGHLGIKPYKCTHCELAFNTNSNLHRHLRTHTGKKPHECLHCHKYFGTKENLKQHTITHTGERPHTRKTQQSSFDANLLDVYTKITSRKLQDWNNMPKIICQRCSTQLTSINDFILKCVEADEKFNNIAQAILNLSNENEINLSSLKVEGEVIEVIEVHVLDDEELEINSADIKDKINISVDDWKDSSSFLESTEIKTTLNKTEENKTLQENAFKRPQRTNKRKKLNDEVKDPPKKPRCKNKRIYLSPVTCFTCKMKFKIGAPGKARQELEEHYKTSEGCKPQEFKCPHCPRMCRKKSDLELHMDVHSTDLKYKCKECELCFKQESSLIRHFNNKHNANAEPSLCEFCPKSYLNLRNLQAHLQQCHPEKLNIICNLCHKKCINERGLQRHIAAIHKDKKKVENKQEITCNLCSKKFKNTVGLHLHMRCVHLDGTKIYHNCNLCPKKFLNELCLKRHMDKNHPNGEADTKSVCIKCTFCPKMYNSVKYLKCHMRKIHSFKLCSICGIKVRSIVFQLHLNKHKGIRPFECNTCSKKFYTKAELKMHGNIHLSIKPFKCNKCTATFSVSSSLYRHYRTHTGEKPFECPHCHKCFGRRQHLVQHSRIHTGERPFECPHCDETFTFLSTLCLHKKTHIKNEFVTDQQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -