Cbif000244.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987193.1:1338765-1342818[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.18 8.2 7.3 2.4 3 21 156 174 155 175 0.93 2 14 0.02 0.93 10.2 1.0 2 23 185 207 184 207 0.94 3 14 0.009 0.42 11.3 0.0 3 20 215 232 214 234 0.94 4 14 1.7e-05 0.00081 19.9 3.0 1 23 422 444 422 444 0.98 5 14 0.66 31 5.5 0.5 2 20 465 483 465 485 0.91 6 14 3.7e-05 0.0017 18.8 1.3 1 23 494 516 494 516 0.95 7 14 1.2e-05 0.00057 20.4 1.1 1 23 522 545 522 545 0.94 8 14 0.0012 0.053 14.1 2.6 1 23 553 575 553 575 0.96 9 14 0.00056 0.026 15.1 4.3 1 23 581 603 581 603 0.98 10 14 6.3e-06 0.00029 21.3 0.4 1 23 611 633 611 633 0.95 11 14 3.2e-06 0.00015 22.2 1.5 1 23 639 661 639 661 0.98 12 14 0.00021 0.0098 16.5 1.8 1 23 667 689 667 689 0.97 13 14 7.7e-07 3.6e-05 24.1 0.1 1 23 695 717 695 717 0.98 14 14 0.035 1.6 9.5 0.9 2 23 724 746 723 746 0.94
Sequence Information
- Coding Sequence
- ATGGATCTTCAGCAAGAATTGGAATTGACGAAAACGTGTAGGTGCTGTTTGTCTTCAGAAAGCGTAACAATGGCTTTTTTTAGTCCAGCACTAATGGACATATTTACCTCAATAACTTCTCTTAAGtTTAAGGATGAAGACATCTTTCCAAagctaatttgtttaaattgtcTTCTTCAAATAAACACCATCCAAAAATTTGCAGAAGTTTGCAAAACATCTTTTGCGACCGTTGAACGAAACTcaagtttaattaatttaaatgttgaaGGAATTAAAGAAGAAGTtgtcaacaaaattaaaaaagaaccgATCGAAAATATAAGCGGATATTTATTACGATATGTTAAGGGAGAGCCGATCGAAATTTGTATTTCTGATGAAGAAAATCACTCGGAAAATCATGAACAGCATTTTGTTGAAGATTGCAAACCTCTTACAAGTCAGAAAACACCAACAAACGATTGTTACTCTTGtcaatacaaatttaaaaatagatttttactaCACAAACACTATCAAGAAAGTTTAACGTGCAAATCAAGACAATGGACTTGCCTTCTTTGCAATCAAACATTTAAATTCGTAGAGGAATATCGTAGACATAAGCAGAATGGGCATAAAATCACAAATAAtaacatttgtaaaatttgtggaAGAgGTTTTGGTAAACCCCATGGGTTAATAGACCACTTGGAAAATCAACCTTGTGAGAATCGAGcaaacaCCATGGTCCAACCCTTAAGTAAATCAGACTTCAACAACATCTGCAGATGCTGCTTATCTACCGAAGAACAAAGAATGGCTTCACTTAATCAATGGCATATAAAGATATTTTGTGCAATAACTTGTCTGGAGCTCACGAAAGAAGACATGCTTCCGAAACTAATATGCGAGGAATGCGCTGTAGAAATGTATCGGATTAAGAAGTTTGCTGATGTTTGCAAGAAATCAGATGCTAGGCTACAGAAAATTAACAATGAAAGTGTACAGGAGGAAGTTAAGACAGAGGACAGTGTTAAAATTGAGTCTGGAGGTGATTCTGGTGACTTATTAAATGAGGAAATGTATCCAGAAGTTAGTATAAAGGAAGACAGTGCCGCGGATGATAAAAGTGTTGAAAGCTATGACGCGGATAATAATTTAAGCGATATGGATGATAATACTCCTCTTTTGGACCTTAAAAAAGAGGCCAAACATGAAAAATCAACCCTAAGTAAAGTTACCAGATCAAAAAGGCGAAAAATGAACTTGGATAAAAGATACCGTTGCGACCATTGTGATAAATATTACAGAAGCCCGTCTCGATTAAAAGAACACATGAAagcgcatttaaaaaaagacgaAAAGCTAAAAATCAAATCagaaaaacccctaaaaatcCAACTTAACACATGCTACACTTGTAAGACTAAATTCAAAAGTGCGGCACTTCGTAATCAGCATTATGAAGAAAGTGGTACCTGCAAGCCTCGACAGTTTAATTGTGAAATATgtagtaaaacttttaatacaAGAGCCAAGTTGAAAAAGCACGAAGTTATGCACTCGGATGATAGAACGTTTGCTTGTTCGATATGTAATAAAACCTTCAAACATTGGGCTAATTGGAAATGGCATGAAAAGAATATTCATGATAAGGATGGGCAAATGAAGCATATTTGTAATGTTTGTGGAAAAGGATTTGCGCTACCATGCCACCTAAAACTTCACGAAGAAACCCACACCCACTCAGGCTCCTATATCTGCGACCTATGCGGCAAAACATGCACAAGCAAACTTCAATTCCGTTCCCACAAACAAACCCACAAAAGAGCCATGAACCAAGACTTCCTGTGCACTGACTGCGGCAAAGTATTCGGCACAAAACAAAACTTAGTCCAACACGCCCGACAACACACTGGAGAAAAGCCTCATCAATGTCCCCATTGCCCCAAGTCATTTGCACAAACCGCTAGTCTACAATCGCACGTGAACATTCATTTAGGCATTCGCCCTTACGCTTGCGATTTGTGTGAAAAGACCTTTAGGCAAGGCCAGCACTTAAAGGCGCATAAACTGAGTCATTCTGGGGCAAAGCCCTACGAGTGTAATATTTGCGGGAATAAGTTTGTTTCTGCTAGTAATTTAAGGTTGCATATGCTTATTCATACCGGGGATACGCCCTTAAAGTgtagtcattgtgatgctggtttTGCTGATTATAAAACGAGGAGAGCGCACGTTAAAcaggtgcatgggataattacAACTAAGGGGGGTTTAATGGAGCACGATGAGGCTAAACAAGAAATGGTGTAA
- Protein Sequence
- MDLQQELELTKTCRCCLSSESVTMAFFSPALMDIFTSITSLKFKDEDIFPKLICLNCLLQINTIQKFAEVCKTSFATVERNSSLINLNVEGIKEEVVNKIKKEPIENISGYLLRYVKGEPIEICISDEENHSENHEQHFVEDCKPLTSQKTPTNDCYSCQYKFKNRFLLHKHYQESLTCKSRQWTCLLCNQTFKFVEEYRRHKQNGHKITNNNICKICGRGFGKPHGLIDHLENQPCENRANTMVQPLSKSDFNNICRCCLSTEEQRMASLNQWHIKIFCAITCLELTKEDMLPKLICEECAVEMYRIKKFADVCKKSDARLQKINNESVQEEVKTEDSVKIESGGDSGDLLNEEMYPEVSIKEDSAADDKSVESYDADNNLSDMDDNTPLLDLKKEAKHEKSTLSKVTRSKRRKMNLDKRYRCDHCDKYYRSPSRLKEHMKAHLKKDEKLKIKSEKPLKIQLNTCYTCKTKFKSAALRNQHYEESGTCKPRQFNCEICSKTFNTRAKLKKHEVMHSDDRTFACSICNKTFKHWANWKWHEKNIHDKDGQMKHICNVCGKGFALPCHLKLHEETHTHSGSYICDLCGKTCTSKLQFRSHKQTHKRAMNQDFLCTDCGKVFGTKQNLVQHARQHTGEKPHQCPHCPKSFAQTASLQSHVNIHLGIRPYACDLCEKTFRQGQHLKAHKLSHSGAKPYECNICGNKFVSASNLRLHMLIHTGDTPLKCSHCDAGFADYKTRRAHVKQVHGIITTKGGLMEHDEAKQEMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -