Cbif003102.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:2768585-2781466[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0026 0.12 13.0 0.8 2 23 83 104 82 104 0.97 2 30 6.1 2.8e+02 2.4 0.5 1 23 109 133 109 133 0.84 3 30 3.8 1.8e+02 3.1 1.0 2 19 141 157 140 162 0.73 4 30 0.00089 0.041 14.5 3.9 1 23 167 189 167 190 0.94 5 30 0.00055 0.025 15.2 0.2 1 23 196 218 196 218 0.98 6 30 0.0017 0.078 13.6 2.4 1 23 224 246 224 246 0.97 7 30 1.4 63 4.5 1.9 1 23 252 274 252 274 0.94 8 30 0.048 2.2 9.1 0.3 1 23 278 301 278 301 0.94 9 30 3.9 1.8e+02 3.0 1.0 2 21 337 356 336 357 0.92 10 30 1.7 78 4.2 0.3 1 19 373 391 373 393 0.89 11 30 0.75 35 5.3 0.9 3 20 518 535 517 537 0.94 12 30 0.038 1.8 9.4 0.5 2 23 566 587 566 587 0.97 13 30 0.018 0.85 10.4 2.9 1 23 592 615 592 615 0.96 14 30 9.9 4.6e+02 1.8 3.5 2 22 623 642 622 644 0.72 15 30 0.00028 0.013 16.1 1.8 1 23 649 672 649 672 0.96 16 30 0.017 0.78 10.5 1.6 1 23 678 700 678 700 0.99 17 30 1.3e-05 0.00061 20.3 0.5 2 23 707 728 706 728 0.97 18 30 0.0084 0.39 11.4 1.1 1 23 734 756 734 756 0.96 19 30 2.1 95 3.9 0.4 2 19 777 794 776 796 0.80 20 30 0.036 1.7 9.4 0.5 2 23 827 847 826 847 0.93 21 30 0.002 0.093 13.4 0.6 1 23 852 874 852 874 0.99 22 30 0.00086 0.04 14.5 0.8 2 23 881 903 880 903 0.95 23 30 0.00014 0.0063 17.1 0.4 1 23 909 931 909 931 0.98 24 30 0.0015 0.07 13.8 0.5 1 20 982 1001 982 1003 0.95 25 30 0.11 5.1 7.9 0.1 3 23 1026 1046 1025 1046 0.93 26 30 0.089 4.1 8.2 4.4 1 23 1052 1075 1052 1075 0.97 27 30 0.0086 0.4 11.4 1.5 3 23 1083 1103 1082 1103 0.98 28 30 0.014 0.66 10.7 2.6 1 23 1109 1131 1109 1131 0.97 29 30 0.00025 0.011 16.2 3.3 2 23 1138 1159 1138 1159 0.97 30 30 0.0005 0.023 15.3 2.2 1 23 1165 1187 1165 1187 0.97
Sequence Information
- Coding Sequence
- ATGTGGTGCTCTATTCCACACCACCTGGAAACTAAAAGCCCACGTCAAGGTACTCCACTTAAACGAGAACGACACCAAGACATGTCCGTTATGCGCTTCGCACCTTTAAAGATAAAACTAACCCATTTTGATAGAGACGGAAAATGCTTGGACAAGTGCTCCTACCGTGGTAGAATCTTGACATCAAAACCGAACAAGACCAGTAAACCAAAGGTCGCAACTAAGGTTCCTAAGGACGCATCAACGATGTGCCAAATATGCGGTACCGTCTCAAAAAGCAAGTATCTAGCCAAACAGCACATGACAACTCACGAAGAACGTAAATTCAAATGCGACACATGTGGTGCTCTACATGGAAACTCCACCTGGAAACTAAAAGCACACGTCAAGGTACTTCACTTAAACGAGAACGACACCAAGACATGTCCTTTATGCGACAAGGAAGTTAAGAAGTCCTCCTGGAGCTACCATCGCAGTTTCTACCATAAAGACCACGCGCACGCTTGTACCAAGTGCGACAAGACCTTTATCTACAAAATCAAGCTTGACGCTCATGTCCGACGGCACCACTTAAAGTCCAAGACGTTTTCGTGCCCGCAGTGCGACAGCGCGTTTTATACCATCGCTGAGTTGAACCTCCACATAAAGAGGCATAGCGGGGTCAAGACTCATGTTTGTCCGCACTGCAGTAAGAGTTTTCTGGAGGCGACAGGGCTAAAGAAGCATGTAAGGATGCATCCTGGAGAGAAGCCGTACGCGTGTCAGTACTGCGATGAACGGAAAGGGACGATGTATCATTTGAAGCAGCATTGGTTTGTTCATAAAGGGGAGTTCGAATGTCATTTGTGTCCTAAAGGGTTTGTTGCTGATGAGGTGTTGAAGTACCATTTAAGAGACGTTCATAAGATTAGAGATGTAGATACTATTTTGGAGGAAGACCTTCAAATTAAAGAAGAAAACATTACCAATCCGAGACcttccaaaaccaaaaaagtTCCACTTAATCTTGTATGTCTACGCTGCAAACGAATATACCATGCCAAATCAACGTTCACCactcatttaaataattgtccACTATCCAAGACAAGATCTAAAACAACACTGAAGAAATCCTACGTTTGCGGAAAGTGTAACAAAGATCTTAAAAGCGAATTCAGGTACGAGAACCATGTTGACGACGATGGAAATTGTTTAGAGGGCAAACCTCTTAAGAACAGACTTTGTAATATAAAACGTAAAGAATATAAGGCACAGGGGAGTAATTGTCAGAATATACTCGACACGAAAGAGGCGTTTCAAAATCAACCTGATGATGACGAATCTTGTTTGAACGCAGTAGAAGAAGTTGAGGTACAAAAAGTAAAACGAAGGAGTACCCCAAGGCTTCGAGATGACGACGAAACTTGTTTGAACGTGTCAGGAGAAACTCAGACACAAAAAGTAGGGCAGAGACGAACCCCAAGGCTCCGCGATGACAATGAAACATGTTTGAACGTCCCAGAAAAAGTAGagacacaaaaaataaagccCCGGCGTACCCCAAGGCTCTGCGATAAGTGCAACATAACTCTAACCAGTGAATTCAACTACCAGCACCATTTCAACGAAGCTGGACAATGCCTAGACCCAAATTCGCAAACCTTTAAATCCAAGATCCAACGCATAAAACGAAAACTTAAACCATACTCAGCCGTGTGTGAGATATGTGGACTTGTATCCCATACCCAAAGCGGCGCCAAAAAGCACGAACAAACGCACACCAAAAAACCGTTTCCATGTAACCAATGTCAAACTGGGTTTTACAAAGACTACCTGCTTGAGAAACACATCAAACATAAGCACTTGAAGGAGATAGAAACCATAAAGTGTCCGCATTGCGACAAGATCTTAAAGAAGGTTTGCATGTACGACCACATTTACAAATTCCACAGGAAGCACAATTTCGCGTGTAGTTATTGCGACAAGACTTTCGCGCACCAGGCTAAGTTTGACCAACACGTCAATCGCATCCACACCGGATTACGAAAGTACCGCTGCTCCGAATGTCTATTCGCTTTTTACTCACGCGGTGAGCTCAACTTCCACATGAAAAGACACAAAGGCATAAAATCCAAAGTGTGCGCGCAGTGCTCGAAGGCTTTTTATAATTCGTCCGAGTTAAACAAGCATATATTAACGCATAGTAGTGAGAAACCGCACGCGTGTCAGTACTGCGATGTCCGTACTAGGATTAGGGATAATTTGAAGATTCATTTGTTAAGTCATAAGGGGTCTTTTATGTGTAACTTGTGTCCGAAAGGACTTCCACCTCGACGTCCAGAAATAGAGTGCAAGAAGTGCAAGCTAAAATTCCGAAACACACTTCGTTTCGACGCACACATCGACCCCAACGGGCTATGCCTCGACCGACTGGACAAACTATTCCGCAACAGAATACGTAACTTGCACATTCAAAAACCGGAAGTAGAGTTAAAGATGTGCGATATATGTGGAAAAGCGTTTGAACCTAAGAGTTTCGGCTACCACAGAAGAAGCCACGAAGCACCCAAGTTCACGTGTAATGTCTGCAACGCCGGGTTCCAAAACCCGTCTAGGTACGACCTCCACATGCGCCGACACGCGGGCGCGAAGACACTCCCTTGTACCAAATGCGACCAGTTGTTCTACAACCAAGCGCTTCTCAATCATCATCTCAAGATAATACATGAACGTATCCGTGCTTACGAATGCGAGGTTTGTTCAAAAGCGTTTTTCACTCGGACGCAACTTGATAGGCATGTTCTGATTCATACGGaatacgAAGACGACGACGATGAAGATATCAAGAAAGAAAACATTAAACTTGAAGACAGTGACATCAAAAAGGAGCGAAAACCGCGTAAAAAACGAATGAAAAAAGAACCAggattaaaagtaaaaaaaatcaaaaaggtaAAAAAGCACAAGTGCAAGAAATGTAAAGAAGTTTTCGACAACGAAGATCTTCTGGAGGAACACCAAGACAACGGGTTTGACTGCCAACCATTACCCAAAAGCAAGAAACTCAAAGAAACTAAGCCGTACCACGAGTTGTGTCAGATATGCGGGAAAACTTTGAAAACGCGGTACGGCGCAGAGTATCACGCAGCATCTCATCGCGCGATAAAAGACTTCGAGTGCACTTTATGCCAAATGAAGTTCCTTACCAAGCCCAAACTTAACCACCACATGAAATACAAACACGAGAACGAGATCATAGGCTTATGTCGGTACTGCGGAAAGGCCTGTAAGTCTGACGGTGCCCTTCGGTACCATCTAAAACTGCACGCCAAGGAAAGAGCCTTCGCGTGCACCTTTTGCGACAAGAAGTTCCTCGTAGAGAACCACTTAAACGAACACCTAAGAAGACATCGTGGCGAGAAGACACGGCAATGTCAGTTCTGTGACATGGCCTTTTGTACGTCCTCAGAACTGAAGAAGCATGTTTTTACGCATACAGGGGAACGGCCGCATTCGTGTAATTATTGCGCTGGGAAGTTTATCTCCAAGTATAACTTAAAGGTGCATTTGATGACACATAAGGGCGATTTTGTGTGCGGGGTTTGTAGTAAAGGGTTTCTCGAGGAGGAGATTCTTAAGTTTCATGTTAAGATGAAGCATAATTAG
- Protein Sequence
- MWCSIPHHLETKSPRQGTPLKRERHQDMSVMRFAPLKIKLTHFDRDGKCLDKCSYRGRILTSKPNKTSKPKVATKVPKDASTMCQICGTVSKSKYLAKQHMTTHEERKFKCDTCGALHGNSTWKLKAHVKVLHLNENDTKTCPLCDKEVKKSSWSYHRSFYHKDHAHACTKCDKTFIYKIKLDAHVRRHHLKSKTFSCPQCDSAFYTIAELNLHIKRHSGVKTHVCPHCSKSFLEATGLKKHVRMHPGEKPYACQYCDERKGTMYHLKQHWFVHKGEFECHLCPKGFVADEVLKYHLRDVHKIRDVDTILEEDLQIKEENITNPRPSKTKKVPLNLVCLRCKRIYHAKSTFTTHLNNCPLSKTRSKTTLKKSYVCGKCNKDLKSEFRYENHVDDDGNCLEGKPLKNRLCNIKRKEYKAQGSNCQNILDTKEAFQNQPDDDESCLNAVEEVEVQKVKRRSTPRLRDDDETCLNVSGETQTQKVGQRRTPRLRDDNETCLNVPEKVETQKIKPRRTPRLCDKCNITLTSEFNYQHHFNEAGQCLDPNSQTFKSKIQRIKRKLKPYSAVCEICGLVSHTQSGAKKHEQTHTKKPFPCNQCQTGFYKDYLLEKHIKHKHLKEIETIKCPHCDKILKKVCMYDHIYKFHRKHNFACSYCDKTFAHQAKFDQHVNRIHTGLRKYRCSECLFAFYSRGELNFHMKRHKGIKSKVCAQCSKAFYNSSELNKHILTHSSEKPHACQYCDVRTRIRDNLKIHLLSHKGSFMCNLCPKGLPPRRPEIECKKCKLKFRNTLRFDAHIDPNGLCLDRLDKLFRNRIRNLHIQKPEVELKMCDICGKAFEPKSFGYHRRSHEAPKFTCNVCNAGFQNPSRYDLHMRRHAGAKTLPCTKCDQLFYNQALLNHHLKIIHERIRAYECEVCSKAFFTRTQLDRHVLIHTEYEDDDDEDIKKENIKLEDSDIKKERKPRKKRMKKEPGLKVKKIKKVKKHKCKKCKEVFDNEDLLEEHQDNGFDCQPLPKSKKLKETKPYHELCQICGKTLKTRYGAEYHAASHRAIKDFECTLCQMKFLTKPKLNHHMKYKHENEIIGLCRYCGKACKSDGALRYHLKLHAKERAFACTFCDKKFLVENHLNEHLRRHRGEKTRQCQFCDMAFCTSSELKKHVFTHTGERPHSCNYCAGKFISKYNLKVHLMTHKGDFVCGVCSKGFLEEEILKFHVKMKHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -