Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987193.1:4682254-4685244[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0034 0.16 12.7 0.3 1 23 186 208 186 208 0.99

2 12 0.00027 0.012 16.1 0.7 1 23 214 236 214 236 0.97

3 12 0.00084 0.039 14.6 3.5 1 23 250 273 250 273 0.93

4 12 1.3e-05 0.0006 20.3 3.1 2 23 295 316 294 316 0.96

5 12 4.6e-05 0.0021 18.5 0.2 2 23 323 344 322 344 0.96

6 12 1.2e-08 5.4e-07 29.9 1.6 1 23 350 372 350 372 0.99

7 12 5.7e-06 0.00026 21.4 5.6 1 23 378 400 378 400 0.98

8 12 0.24 11 6.8 2.3 1 21 406 426 406 428 0.93

9 12 1.6e-05 0.00076 20.0 1.7 1 23 434 456 434 456 0.98

10 12 0.00025 0.012 16.2 2.5 1 23 462 484 462 484 0.99

11 12 4e-05 0.0019 18.7 0.4 2 23 491 512 491 512 0.97

12 12 0.00013 0.0061 17.1 0.5 1 23 518 541 518 541 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0034	0.16	12.7	0.3	1	23	186	208	186	208	0.99
2	12	0.00027	0.012	16.1	0.7	1	23	214	236	214	236	0.97
3	12	0.00084	0.039	14.6	3.5	1	23	250	273	250	273	0.93
4	12	1.3e-05	0.0006	20.3	3.1	2	23	295	316	294	316	0.96
5	12	4.6e-05	0.0021	18.5	0.2	2	23	323	344	322	344	0.96
6	12	1.2e-08	5.4e-07	29.9	1.6	1	23	350	372	350	372	0.99
7	12	5.7e-06	0.00026	21.4	5.6	1	23	378	400	378	400	0.98
8	12	0.24	11	6.8	2.3	1	21	406	426	406	428	0.93
9	12	1.6e-05	0.00076	20.0	1.7	1	23	434	456	434	456	0.98
10	12	0.00025	0.012	16.2	2.5	1	23	462	484	462	484	0.99
11	12	4e-05	0.0019	18.7	0.4	2	23	491	512	491	512	0.97
12	12	0.00013	0.0061	17.1	0.5	1	23	518	541	518	541	0.96

Sequence Information

Coding Sequence: atgaaattttCGCGAATCTGTAGGGTCTGCCTTACAGAAAAATCAGCGATGAACCCGATTTTTCAAGCCTGTATTTCAAGCATGATCATGTCCTGCAGTTCTGTTCAGattatGGAAGGCGACGGTCTACCTCACCAAATATGCATGCAATGTCTTCAAAAACTAAACCAAGCATTTGCGTTCAAACAACAATGTGAAAAGTCGGAAATGGTTCTCAGAGAATACTTAAACACTTTAGAATTACAGTCTGTTACATTGGATGGCTCAAATATAATCAGTGAAGTAAAAACCGACCAGTTCTTCGCAAGCAGTGAAGTCCTACAACAGTCCTCGATTTTTCAAGATATTTTTAATGACGCTACTTCTCATTCTTTGGCTGATACTTTTACAAATCAGAATGCTAGCACAGTGGTCTCCGATTTGGCTGAAACAATGCAAAGTTTACAAACTATTGCGGAACAATGCTTACCTGAAACTTGGGAAAGCGACACTCAGCTAATGTCTTGCCACAGTAATTCACAAGAAACGTGTAGCACGTTAAATCTTAACAATTTGTACAAATGCCAATATTGCGAAGGAATGTTTAAAGACGAATGGATTTTGACAGAGCATATGAAAATTCATATTGGACTGCACAAGTACGTTTGCACAATTTGTGGAAAAGAATGCCCCAATCAAGCACTTCTTGATGAACATTTATTGCATCATTCTCTGCAAACTACTGaagcacaaataaaaattaaaaatcattgctgtgaaCTTTGCGAAAGAACGTTTTCTGAAGCAAAGTCCTTACAAAAGCATCTTAAAGACATCCACTTTTACAACACTTTCGAAAATGAACCAACGAACGATGTCAGCATTGATAATGATAAAAAATGcgtttgtagaatttgtggAAAGAGataTAGGCTAAACAAATCGCTCACAATTCACATGAGAACCCATACCGGAGAAAGGCCTTTAAAATGTGACATCTGCGATAAAACTTTTGCAATACCTGGTTCCCTTTATAAACATCGAAATTTACACGATTTAAACAAGTATTTTGAATGTAAGATTTGCGATAAGAGATTTAATAGATCTTATAATTTGGTTGAACACATGAGGACTCATACTGgaagcaAACCACATACATGCTCAATTTGtagtaaacatttttcaacGTCTAAGAATTTGGTAAACCACATTAAAACCCATACTGGAGAAAAGCCATTTAAGTGTCTTCAGTGCATTTCGAGTTTCGCCAccaATGGTCAGCTGAAAAAACATGTAATGTGTCATACTGGCCAGACTCCATATCCTTGTTGGCAATGTGGCAAATCTTTCCGTCGAAAAGAAACTAGAGACACTCATATGAGATACCATACTGGAGAGAGACCTTACCAATGCAACTTGTgctctaaaaaatatattgcaGCCAGTCATTTAAGGGTCCATAAGAAGTCTCACAATAACGAAAAGATACCCTCCTGCAATATTTGTACGAAAACATTTCCAGATGTCAGAACTCTAAAATCTCATATGATAATTCATACAGGACAGAAGCCTTATTCTTGTGAATTATGTGGACATCAATTTACCCAACTAGGATCTCTTAGTGCGCATGTGAAGAACATACATACATTTATGAGCTCCATTAAATAA
Protein Sequence: MKFSRICRVCLTEKSAMNPIFQACISSMIMSCSSVQIMEGDGLPHQICMQCLQKLNQAFAFKQQCEKSEMVLREYLNTLELQSVTLDGSNIISEVKTDQFFASSEVLQQSSIFQDIFNDATSHSLADTFTNQNASTVVSDLAETMQSLQTIAEQCLPETWESDTQLMSCHSNSQETCSTLNLNNLYKCQYCEGMFKDEWILTEHMKIHIGLHKYVCTICGKECPNQALLDEHLLHHSLQTTEAQIKIKNHCCELCERTFSEAKSLQKHLKDIHFYNTFENEPTNDVSIDNDKKCVCRICGKRYRLNKSLTIHMRTHTGERPLKCDICDKTFAIPGSLYKHRNLHDLNKYFECKICDKRFNRSYNLVEHMRTHTGSKPHTCSICSKHFSTSKNLVNHIKTHTGEKPFKCLQCISSFATNGQLKKHVMCHTGQTPYPCWQCGKSFRRKETRDTHMRYHTGERPYQCNLCSKKYIAASHLRVHKKSHNNEKIPSCNICTKTFPDVRTLKSHMIIHTGQKPYSCELCGHQFTQLGSLSAHVKNIHTFMSSIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -