Cbif004824.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- ZEB2_1
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:22582868-22594891[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.0076 0.35 11.6 5.7 1 23 12 34 12 34 0.98 2 25 0.014 0.67 10.7 2.7 1 23 40 62 40 62 0.95 3 25 1 48 4.9 2.8 1 23 67 90 67 90 0.82 4 25 3e-06 0.00014 22.3 1.8 1 23 97 119 97 119 0.95 5 25 1.4e-05 0.00065 20.2 0.4 2 23 125 146 124 146 0.96 6 25 1.6 73 4.3 1.2 1 23 237 259 237 259 0.93 7 25 0.057 2.6 8.8 0.1 2 23 265 287 264 287 0.93 8 25 0.0036 0.17 12.6 0.4 1 23 292 314 292 314 0.98 9 25 0.48 22 5.9 2.1 2 23 367 388 366 388 0.85 10 25 0.00013 0.0058 17.2 0.6 1 23 398 420 398 420 0.95 11 25 0.001 0.048 14.3 4.4 1 23 426 449 426 449 0.97 12 25 0.00017 0.0079 16.7 3.2 1 23 455 477 455 477 0.96 13 25 0.096 4.4 8.1 0.5 1 13 483 495 483 497 0.89 14 25 0.065 3 8.6 2.7 1 20 519 538 519 539 0.95 15 25 2.4 1.1e+02 3.7 0.1 1 23 571 593 571 593 0.93 16 25 0.29 13 6.6 0.9 2 23 599 621 598 621 0.93 17 25 0.0024 0.11 13.1 0.1 1 20 672 691 672 693 0.95 18 25 0.36 17 6.3 6.0 1 23 724 746 724 746 0.97 19 25 0.001 0.048 14.3 0.5 1 23 751 774 751 774 0.95 20 25 0.11 4.9 8.0 1.7 1 23 779 801 779 801 0.96 21 25 8e-05 0.0037 17.8 2.3 2 23 855 876 854 876 0.97 22 25 0.0095 0.44 11.3 0.1 1 23 883 905 883 905 0.95 23 25 8.9e-06 0.00041 20.8 1.1 1 23 911 934 911 934 0.97 24 25 1.8e-06 8.5e-05 22.9 1.4 1 23 940 962 940 962 0.94 25 25 4.9e-05 0.0022 18.5 0.3 1 23 968 991 968 991 0.98
Sequence Information
- Coding Sequence
- ATGAGAGACGCGCATCCAACAACAGTAAAAACATTCCATTGTCCTCAGTGTGGAAAGGAATGCCAGCATGAGACATCACTAAAACTGCATCTAAAAATTCACAATTATAGGAGAAACTACTTGTGCACCGTTTGTGGAAAATCCTTTGCCTCCGGAGCGTCACATCGCCATCACATGAAACTTCACGATAACGAAAAATTCAGTTGCGACATTTGTTCCAAAACATTTGCTTGCCAACTTTAtgtaaatagtcataaaaaatatgcTCACTCAgaacaaaaattgaaatttttatgtccAGAATGTGGAAAGATTTTTTCTCAGAAGGCATGTCTAAGACAACATCTGCAGCGTCACAATCAAGAACCAATTGTATGTAACATTTGTGGAAAATCAGTAACAAGCAAAGAGTCCCTTAAAGATCATAAGCGACTTCACACTGGAGATAAACCATTCAAACTGGAAGTTACGTCTGATGATGTCTTTAAAACCGAAAATCCAGAAGATATTGACTTAAGTCAGTACCATAAAGAAGTGAATGGAAAGGCGATCTTCCAATGCACACATTGTTCTGATGAATATGAGAGCAGAAAAAGATTTCTCCAACATTTAGACGACATAGATGTGAAAAATGCATGCGAACCACCAATACTGTCAGAGGTCCCGTTCTTACGCCCGTACCAACAAGTAGCAAATGGAATTGTTTCATATCTCTGCCAAAAATGTCCATATACAGAAATTTCCGAATCAGCCTTTACGAAACATTTGCATGAACATGGAATATACAGAATAGTCTGTAGGGTTTGCgacaaaaactttaaagtaaaGACTCCATACGTAGATCACTATTTAATCGAGCATGAGAACAAGCGTTATGTCTGTACCATTTGCAAGTCAATCTTTAAAAGCATATCTGGGTACTCTATCCACATGCAGAATCACAGGGACTATGAGAGCAAAGAAACCTACAAGTGTCCTCTTTGTGCTAATTCTAACCATGAGTACAGAACCCCGCATTCTGTTCGGCACCACCTTATCAGAACGCACAAAGAACTTGGAAAACAATACGTTGGCATGTTCAAGTTTAAACGTAACCTCCCGTGTCCAAAATGTGACAAAGTCTTTCATTGCATCGCTCCGTTTGAAAAGCATGTAAAGAGTCATGATGATGGGATGACGGATCGTAAGAAATTCTTGTGCAATCAATGTGGGCAAGTTTTGAAAAAGAAATACAGTCTAATCGAACATATGAAAATTCATACAGGGGAAAAACCTTTTAGTTGCTCTACTTGTTCTAAATGTTTTAAGAGTATAACGTTGCTTAAGTTGCATCAGAATAAGGTTCATCTTAGAGCAAGACCATATTTGTGCAATCTGTGTCCAAAGGATTTTTCAACTACTACGAACCTTAGAAATCATTTGAAACATCATTCGGGGATAAGGCCATTTGTGTGTGGCATTTGCAAAAAGACATTCAAATCATTGGAAACAAAACTTGACACAGGCACATTCGATTTAAGCCAATACGAAAAATCCAAAGGTTCCAAAACAATCTACAGTTGCCCTCATTGTTCCTGTACCTTCGACACCCGAGTCAAATTTCTCGAACACCTTGACGATATCGATATACAAAATTGCGAAGAACCTAATACTATTTCTGTCCATCAATTTCTTCAGCCCTATCAACAAGTACAAGATGCAAATGTGTCATACGTGTGTTCCCAATGTCAGGATGTTATAGTTTCTGAAAGTGCATTTACGCAACATTTATTCGATCATGGAATCTCAAGACTAACTTGCGAGTTTTGCTTTAAACTATTCaagcaaaaaacattttacgtGGATCACTGGTTGATAGAACACAAAGACAAGCCAGTATTGTCAGTTGAAGTGGACAGCGATACTGATTACAAAGTTAATAGCACATCAAGAAAAAAGAGAGAACGCAAAAGAGTACCTGTTAAGACCTGCTTTAAACACTACATTCGTAAAAATGAACTTGATGAAATCATCTACAAGTGCGATCATTGCGACACAAAATTCCCAAACGAGGCTGCCATTATTAGACACTTAGACGAAATTGATATAACTTTAGTTGAAAAAcctaaatttaacaatgaatacgAATTTACTAAACCATACAGGATTgtagaaaatggcgaatttGTGTATCAGTGCAAGGAATGCCCATATAAACATTCCTCAAAGTCAACATTCTGTACACATTTGGAAGAACATGGTATTTCAAGATTTATTTGCAAGATCTGTaatcaaaagtttaaaagagaaAGTTGGGTTGGTAGACATTATTTAATAGACCATTTAGGAAAACGATACATATGCGAAAAGTGtaaggccatcttcaggacgCAAGAAGGTCATGTACATCACATGGAGGTACACGAGAATTACGTTAATAAGATAACTTACGAATGTCCGATATGTAGAGGCAAAACAGGTCGATATCACCAATCTGTAAAGGCGATTCGAAAACACCTAAGGGAAAAGCACAAGGACGTAGCCCAAAAGTACTTAGACAAATTTACCCAAGTCAAAGAACTAAAGTGTCCACATTGCGAAGTGGTAACCAAATCCAACAGATCACTAAACAAACATATGCGACAACACGAGCTgcaagaaaaaacatttttgtgtaACATCTGCGGAAAATCACTAGGATCCGACAAAGCCTTAGTCTACCATTTAAAGGTGCATACAGGAGAAAAACCTTTTGCTTGTCAAACCTGTGGTAAATGCTTTAGAACTGAGCCTTCTTTAGCAATTCATCAAAAAACAGTGCACCTGAAAGAAAGGCCGTTTTTGTGTAATGTATGTCCGAAAAGTTTTGCGAGCAAGTCAAACCTACGAACTCATTTAAAGTTTCATGAGGCGGAAAGACCTTATGAATGCAGCATTTGCAAAAAGACTTATGTAACAGGTCCAACGTTAAGGCTTCATATGAGATCAGCGCATCCGGACGTACAACTGTATTTCTAA
- Protein Sequence
- MRDAHPTTVKTFHCPQCGKECQHETSLKLHLKIHNYRRNYLCTVCGKSFASGASHRHHMKLHDNEKFSCDICSKTFACQLYVNSHKKYAHSEQKLKFLCPECGKIFSQKACLRQHLQRHNQEPIVCNICGKSVTSKESLKDHKRLHTGDKPFKLEVTSDDVFKTENPEDIDLSQYHKEVNGKAIFQCTHCSDEYESRKRFLQHLDDIDVKNACEPPILSEVPFLRPYQQVANGIVSYLCQKCPYTEISESAFTKHLHEHGIYRIVCRVCDKNFKVKTPYVDHYLIEHENKRYVCTICKSIFKSISGYSIHMQNHRDYESKETYKCPLCANSNHEYRTPHSVRHHLIRTHKELGKQYVGMFKFKRNLPCPKCDKVFHCIAPFEKHVKSHDDGMTDRKKFLCNQCGQVLKKKYSLIEHMKIHTGEKPFSCSTCSKCFKSITLLKLHQNKVHLRARPYLCNLCPKDFSTTTNLRNHLKHHSGIRPFVCGICKKTFKSLETKLDTGTFDLSQYEKSKGSKTIYSCPHCSCTFDTRVKFLEHLDDIDIQNCEEPNTISVHQFLQPYQQVQDANVSYVCSQCQDVIVSESAFTQHLFDHGISRLTCEFCFKLFKQKTFYVDHWLIEHKDKPVLSVEVDSDTDYKVNSTSRKKRERKRVPVKTCFKHYIRKNELDEIIYKCDHCDTKFPNEAAIIRHLDEIDITLVEKPKFNNEYEFTKPYRIVENGEFVYQCKECPYKHSSKSTFCTHLEEHGISRFICKICNQKFKRESWVGRHYLIDHLGKRYICEKCKAIFRTQEGHVHHMEVHENYVNKITYECPICRGKTGRYHQSVKAIRKHLREKHKDVAQKYLDKFTQVKELKCPHCEVVTKSNRSLNKHMRQHELQEKTFLCNICGKSLGSDKALVYHLKVHTGEKPFACQTCGKCFRTEPSLAIHQKTVHLKERPFLCNVCPKSFASKSNLRTHLKFHEAERPYECSICKKTYVTGPTLRLHMRSAHPDVQLYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -