Basic Information

Insect: Cartodere bifasciata
Gene Symbol: SCRT1_2
Assembly: GCA_963920755.1
Location: OY987194.1:16942262-16945879[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.4 66 4.4 0.1 3 16 61 74 59 76 0.71

2 13 0.0038 0.17 12.5 0.1 1 23 298 320 298 320 0.96

3 13 2.3e-05 0.0011 19.5 1.5 1 23 328 350 328 350 0.99

4 13 2.2e-05 0.001 19.5 0.3 2 23 358 379 357 379 0.97

5 13 7.8e-06 0.00036 21.0 1.2 1 23 385 407 385 407 0.98

6 13 9.7e-05 0.0045 17.5 2.8 1 23 414 436 414 436 0.99

7 13 0.00026 0.012 16.2 2.4 1 23 442 464 442 464 0.97

8 13 6.5e-06 0.0003 21.2 0.5 1 23 470 492 470 492 0.99

9 13 1.2e-06 5.4e-05 23.6 1.2 1 23 498 521 498 521 0.96

10 13 5.5e-06 0.00025 21.5 1.3 1 23 527 550 527 550 0.95

11 13 5.5e-05 0.0025 18.3 2.9 1 23 556 578 556 578 0.99

12 13 0.00018 0.0083 16.7 0.4 1 23 584 606 584 606 0.94

13 13 0.0024 0.11 13.2 0.1 1 23 612 636 612 636 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.4	66	4.4	0.1	3	16	61	74	59	76	0.71
2	13	0.0038	0.17	12.5	0.1	1	23	298	320	298	320	0.96
3	13	2.3e-05	0.0011	19.5	1.5	1	23	328	350	328	350	0.99
4	13	2.2e-05	0.001	19.5	0.3	2	23	358	379	357	379	0.97
5	13	7.8e-06	0.00036	21.0	1.2	1	23	385	407	385	407	0.98
6	13	9.7e-05	0.0045	17.5	2.8	1	23	414	436	414	436	0.99
7	13	0.00026	0.012	16.2	2.4	1	23	442	464	442	464	0.97
8	13	6.5e-06	0.0003	21.2	0.5	1	23	470	492	470	492	0.99
9	13	1.2e-06	5.4e-05	23.6	1.2	1	23	498	521	498	521	0.96
10	13	5.5e-06	0.00025	21.5	1.3	1	23	527	550	527	550	0.95
11	13	5.5e-05	0.0025	18.3	2.9	1	23	556	578	556	578	0.99
12	13	0.00018	0.0083	16.7	0.4	1	23	584	606	584	606	0.94
13	13	0.0024	0.11	13.2	0.1	1	23	612	636	612	636	0.92

Sequence Information

Coding Sequence: ATGTCGGCAGCAAATAATGCCTGCTGCCTTATTTGCAACGGAAGCTGCTTATCCTCTAGAAACTCAATTCAAATATTCAGCTCTGAGacGGTATTAAgctccgaaaaacacattagCACTCTTTTATCAAATGTTTTGGAAACGGAGATCTCTGAAGAAAATGTACACTCAAAAGTAATCTGCAAGAAgtgtttcaaaaattttgtagAACTTGATGATTTGGAGAGTAGATgtcttgaaataaaaaatgaagttcTTCAGAGttataattttactttaaataaactaaataatGATTCTGAAGAGAATCCGACAGACGAAAAAGGAGAATTGGCAGAAGAACGAAAGCCGAAGAAAATGTTAGATATTCCTTCCTCAGATGATGATGGTgGCATGAAAACAACAACTTTTCAAGAAGAAGAAGCTGCCGAGGCTGAGGACATAGAAATGCAACTAGTCCGGATGCACGGAGGAAtggaaaatgaaaattttattttgggaGATAATGAAACTGTAAACGATAGAGAAGATATAGATGCTGGCGCATTAGATCAATCATCAGATTCCGATTATGATCCTAATGACAATGCAGACTTACTTAAAGCTGCAGCTTTGGCGgaaaaaaataatccagataATGTTGAATTTAAAGATATTAAACAAGAACCAAGTGATGGGGAAAAaccgaatattttaaaacgaaaGACTGTTCAGATAAATgaTCCAAAGTCGGAAAGCACCGAAAAACCGCTAAAAGAGGAGTACGAATTTCCGATTGTGTCACGAGATGGTAATATTTACACCTGTCTTTTGTGTGAAGGGGATGAGACTGTGGCCGGAGAGCCAAAAGCAATTATACCCCATATGAAAGAAGCTCACGAAGTACGCCTTTACATTTGCGATGTTTGCGGTGACGACTTCAGAAAAAGAACTGAACTTTCTGCTCACATGGATGACCACGTCGCCACTGAAGAAGGCGACTTCCAATGCGAAGTCTGCAACCGCATCTTCAGCAACTTACGCCTTTTCCGCATTCACCGTAGAATGCATTTCCCCCAAAACAAAGCGTGGCCATGCAGTCTCTGTGGCAAGAAATACAGCTCCAAGAACCTCCTCGACGAACACATGAACACACACACCGGGGTGCGCCCCTACGTATGTCAAAACTGCGGCAAAGACTTCGCCTCCAAATACACCTTCAGAGCCCACGAAAAGACCCATGAGGTACGCCCGCGTCCCTTCCAGTGCACTCAGTGCAACAAATCTTTCCTAAGTCAGCAGAACTTGAACCAGCACGAGAAGACGCATCTGGGGATTAAGGAGTACCAGTGTCACTTGTGCAACAAGCAGTTTGGGTCGTTACATAACCTAGAGGTGCACTCTATTGTTCATACTGGGTTTAAGCCGTATTCGTGCAAGTTATGCGGTAAGATGTTCGCTCGCAAGGCGGAGATACGCGATCACGAGCGCACGCATACGGGTGAGAGGCCGTACCAGTGCGAGTTTTGTGGCGCCACCTTCAGTCAGCGGTCGAACCTGCAGTCTCACAAGCGCGCCACGCATTATGATGACAAGCGACACAAATGCGATGAGTGCGGCAAAGCTTTCAAACGCCGACGTCTATTAGAGTACCACTTAAAGGCAGCCCATACCGGTGAACGTCCATTTAAATGCAATCTGTGTGAAGCCACATTTGTCTACCCTGAGCATTTCAAAAAGCACCGTAGGATTCATACAGGCGAGAAGCCATTTTTATGCGAAGTATGCGGCAAGGCGTTTAACAGCAGAGACAACCGAAATGCACACAGATTCGTCCACTCAGACAAAAAGCCATACGAGTGTTTGGTATGCGGTGCAGGATTTATGCGCAAGCCTCTTCTTTACCAACATATGCAGTCCCAAGGTCATCTCAATGACACGATCGTAGTTAATCAACCGCGTTTGACTACTGACGACGATCAAATGGTCACAGTTAATGCAGATGGGGACATGGAAATAGTGGAGCAAAGTGGTATGGCAGTTGGGGAGGACTCCAAGTTGTATATCGCTGACTTGGCGGAGGGCGAGGTGCTGCACGAAGAAGAGGAGGGTTCTGGAGCTGTGGAGCATATTATAATAGATGGGCAGCAGATTAGTTTTGCGGAGGAGATGGAGGATGAAGAGGGGAATGAGATTGGGGAAGAGGAGTATGAGGAGATTATTACAGGGGATGTTTTGGCTGATGGAGAAACACAGATTATTGATACGCCTGAAGGCCCAGTGCAGTTGGTTAAGGTACGAATTCCTAATGAAAGTGGTGAGGAACAGGAAGCATGGGTTAAAATTGTTCCTgagtaa
Protein Sequence: MSAANNACCLICNGSCLSSRNSIQIFSSETVLSSEKHISTLLSNVLETEISEENVHSKVICKKCFKNFVELDDLESRCLEIKNEVLQSYNFTLNKLNNDSEENPTDEKGELAEERKPKKMLDIPSSDDDGGMKTTTFQEEEAAEAEDIEMQLVRMHGGMENENFILGDNETVNDREDIDAGALDQSSDSDYDPNDNADLLKAAALAEKNNPDNVEFKDIKQEPSDGEKPNILKRKTVQINDPKSESTEKPLKEEYEFPIVSRDGNIYTCLLCEGDETVAGEPKAIIPHMKEAHEVRLYICDVCGDDFRKRTELSAHMDDHVATEEGDFQCEVCNRIFSNLRLFRIHRRMHFPQNKAWPCSLCGKKYSSKNLLDEHMNTHTGVRPYVCQNCGKDFASKYTFRAHEKTHEVRPRPFQCTQCNKSFLSQQNLNQHEKTHLGIKEYQCHLCNKQFGSLHNLEVHSIVHTGFKPYSCKLCGKMFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRHKCDECGKAFKRRRLLEYHLKAAHTGERPFKCNLCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQSQGHLNDTIVVNQPRLTTDDDQMVTVNADGDMEIVEQSGMAVGEDSKLYIADLAEGEVLHEEEEGSGAVEHIIIDGQQISFAEEMEDEEGNEIGEEEYEEIITGDVLADGETQIIDTPEGPVQLVKVRIPNESGEEQEAWVKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -