Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987193.1:1174898-1182487[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.2e-07 2.4e-05 24.7 0.7 2 23 215 236 214 236 0.98

2 16 0.0012 0.056 14.1 4.0 1 23 242 265 242 265 0.95

3 16 0.00039 0.018 15.6 0.7 2 23 280 302 279 302 0.96

4 16 4.1e-06 0.00019 21.9 0.2 1 23 310 333 310 333 0.94

5 16 0.37 17 6.3 0.3 1 14 338 351 338 353 0.90

6 16 1.1 51 4.8 1.0 2 20 512 530 511 532 0.88

7 16 3.1e-05 0.0014 19.1 0.8 1 23 541 564 541 564 0.97

8 16 0.0033 0.15 12.7 4.0 2 23 574 595 573 595 0.98

9 16 1.3e-06 5.9e-05 23.5 0.3 2 23 602 623 601 623 0.97

10 16 0.82 38 5.2 0.1 6 20 633 647 631 649 0.95

11 16 0.00011 0.0053 17.3 1.1 1 23 671 693 671 693 0.95

12 16 0.0023 0.11 13.2 0.3 1 23 701 723 701 723 0.95

13 16 2e-06 9.4e-05 22.8 2.7 1 23 729 751 729 751 0.98

14 16 0.00062 0.029 15.0 4.5 1 23 757 779 757 779 0.97

15 16 2.3e-06 0.00011 22.6 5.0 1 23 785 807 785 807 0.99

16 16 0.00045 0.021 15.4 1.4 1 23 813 835 813 836 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.2e-07	2.4e-05	24.7	0.7	2	23	215	236	214	236	0.98
2	16	0.0012	0.056	14.1	4.0	1	23	242	265	242	265	0.95
3	16	0.00039	0.018	15.6	0.7	2	23	280	302	279	302	0.96
4	16	4.1e-06	0.00019	21.9	0.2	1	23	310	333	310	333	0.94
5	16	0.37	17	6.3	0.3	1	14	338	351	338	353	0.90
6	16	1.1	51	4.8	1.0	2	20	512	530	511	532	0.88
7	16	3.1e-05	0.0014	19.1	0.8	1	23	541	564	541	564	0.97
8	16	0.0033	0.15	12.7	4.0	2	23	574	595	573	595	0.98
9	16	1.3e-06	5.9e-05	23.5	0.3	2	23	602	623	601	623	0.97
10	16	0.82	38	5.2	0.1	6	20	633	647	631	649	0.95
11	16	0.00011	0.0053	17.3	1.1	1	23	671	693	671	693	0.95
12	16	0.0023	0.11	13.2	0.3	1	23	701	723	701	723	0.95
13	16	2e-06	9.4e-05	22.8	2.7	1	23	729	751	729	751	0.98
14	16	0.00062	0.029	15.0	4.5	1	23	757	779	757	779	0.97
15	16	2.3e-06	0.00011	22.6	5.0	1	23	785	807	785	807	0.99
16	16	0.00045	0.021	15.4	1.4	1	23	813	835	813	836	0.95

Sequence Information

Coding Sequence: ATGAGTAAAACATATACAAGGCTTGAGTTTGAAGCCTTATGTAGATGTTGCAAGACACCAGTTATACCAGATTCGCAAACTAAAGTGGAGTCGCATCATTTGTCTCTGTACACAACCATTACGTCTATCCCGCCCAAGCTCCAGGAGAATTTACCAAAGGTTTTTTGTCCTGCATGTGCTACACAACTCGTGGTTATAAGCGATTTTATTGGTGTTTGTGTTAAATCATGTCAAACTCTAAATGCAATTGCTGCTACTCAAATTGTTGAAACGGAAAGCATAGAGACGGTTTTGGTTAAAGTTGAGATACTCGAGAATCAAGTGGAAGAGATTGACATAGCATCTGATGGTGATATTGCCCCTGCAGACAATTTAATTGCAGACTCTTTAGACAACGATTTAAATGATGAAGTATTTGCTAATTCCACTGAAAAGAATACTAAAACTGAAGATAATGTTGCTGTAAGAGTTAAACAGAGAAGCGTTCTGAAATCTAAAGTTGCACGTAAGCGTAGACTTACTTTGAAAAACTTGCCAGAAGATGTTAAATCTTTCGAAAAAGATGTGCGTTGTaaacaatgtaaaaaatgGATAAAACCAGAGGATTTAGGAGCTCACATGGATGCTCATAAGAAAGATAATAAGTGCCCCATATGTAGCCGAGaatttaaaacGCCATCCTACTTGCGAGTTCACATGAAAAGCCACTCAGATGACCGACCTTATGAGTGCCCGTACTGTCATCAATTTTACAGAAGAACTAAATACCTAAACGTCCACATCGCGCATTTACACAAGGGAAAACCTTACAACCCCAGAGGCTCGGAAGGAATGCTTTCATGCACACTGTGCGACAAAAAGTACAAATCCCCAATATCGATGCGAAATCATGTAAAAACTGTCCATGAAGGAAAACCACAAAACACATTTCTTTGCTCTGACTGCGGCAAATCTTTCACAGCAAAAGCGACTCTTACGGAACACATGCAAGTCGTTCATAAAAACGAGCGCTTTCAGTGTTCACAATGTCCCAAAACTTTGTCATCAAAAGGGGCAAAATTACACGAATTGTGCAGATGCTGTCTTACACTTACGAAAAAAGAGCTCCCACATGTAAAATGGGAGGATGTTTCAAACTTATTCACCAGATTAACAGGCCTTCAGgtttactTGGAAGACGACTTACCAAAGGTTTTGTGTAATGATTGCAGTCTACAAATTGATATTATCCAgaaatttataacaaaatgCAAGGAATCAGACGACAAATTAAAAGAGCTAACGTTGGGGCCCCAAGAACCAAAAATAGAGAATGAAATTTGTGAAATAAAAGAAGTTGACTTCATCACATCATTAGAAGAAATAGAAAGTTTTAATGCTTTTGGCGAAGAAAATAGTAGTCAAAGTTTAGTAAATAGTGAAACAGAAGAATCTAAAAATAAGACTGAAGAGTTAGAGTATTggaattACAcatcaatacaaaaaaataaagttaaatccAATCAAAACACTCAAGCCAAGCCAACgtctataaaatgttttacctGCAAAACCgtatttaaaacaacaatCGAACGAAGGGAACACTACAGTAAAAGTTCTGATTGCTCGCCTAAAACCTACAAATGTGAATTTTGCGATAAAAAATACATCAGTAATTCATATTTAAACTTACATGTAAATATAGAACATAAGGAAAATAAGGACGAATTAGCCAATAAATGCGATATTTGTGGTTTGAAAATTAAGCACAAGTATAATATGAAAAGACATAAATCAACGCATGAACAACATACTGAGAAAGAATGTCccatttgtggaaaaaaatttaCGTTAccccttaatttaaaaaaccacaTGAACGTCCACAATGAAGTTGGCTCATTTTCCTGCCCTTGTGGCATAGCATTCAAAACCGCATATCGGTTACGTTACCACCAAGCAAACTGTCCTAAAAGcggtaaaaatacaaaaataaccaaatcaatacaaaaaaatctcGCAAAACGATTTACTTGCAAATACTGTGGCAAAATCTACAAAGGTCGCCAAAACTTAAAGCTCCACGAAGCAAACCACGAAGGCAAATTAGAGCGAAAGTTTCTTTGCCCCATTTGTGGAAAACGTTATTTGACTTTAGCTGGACTTAAATATCACCAACAATCCCACAATGGCACCAAACCACACGAATGCTCGATCTGCAACAAACGTTTCTCGCAAAAAGTACTCCTCAGGACTCATATGGACACACACAACGGAATTAAACGTCATTCTTGTacaatttgcaagaaattattcgGCCAGCAAGCGCATCTTTTCTACCATATGAAAGTTCATTCCGGGGAACGCGAATTTAAGTGCAATATATGCAATAAAGACTTTATGTTTAAGCACAATTTAAAAGTGCACATGAGGACACATACTGGAGAGGTATCACACAAATGTCCAGTGTGCGAGAAAGGTTTTAATGCAAGTAATAACATGTGGAAACACGTTGCGACTCATCACAAGGATTATGTTAGGAAAAAAGGTGCTCCTGTTACTCAAAAATCAATAGAAAACGTTTCTTAA
Protein Sequence: MSKTYTRLEFEALCRCCKTPVIPDSQTKVESHHLSLYTTITSIPPKLQENLPKVFCPACATQLVVISDFIGVCVKSCQTLNAIAATQIVETESIETVLVKVEILENQVEEIDIASDGDIAPADNLIADSLDNDLNDEVFANSTEKNTKTEDNVAVRVKQRSVLKSKVARKRRLTLKNLPEDVKSFEKDVRCKQCKKWIKPEDLGAHMDAHKKDNKCPICSREFKTPSYLRVHMKSHSDDRPYECPYCHQFYRRTKYLNVHIAHLHKGKPYNPRGSEGMLSCTLCDKKYKSPISMRNHVKTVHEGKPQNTFLCSDCGKSFTAKATLTEHMQVVHKNERFQCSQCPKTLSSKGAKLHELCRCCLTLTKKELPHVKWEDVSNLFTRLTGLQVYLEDDLPKVLCNDCSLQIDIIQKFITKCKESDDKLKELTLGPQEPKIENEICEIKEVDFITSLEEIESFNAFGEENSSQSLVNSETEESKNKTEELEYWNYTSIQKNKVKSNQNTQAKPTSIKCFTCKTVFKTTIERREHYSKSSDCSPKTYKCEFCDKKYISNSYLNLHVNIEHKENKDELANKCDICGLKIKHKYNMKRHKSTHEQHTEKECPICGKKFTLPLNLKNHMNVHNEVGSFSCPCGIAFKTAYRLRYHQANCPKSGKNTKITKSIQKNLAKRFTCKYCGKIYKGRQNLKLHEANHEGKLERKFLCPICGKRYLTLAGLKYHQQSHNGTKPHECSICNKRFSQKVLLRTHMDTHNGIKRHSCTICKKLFGQQAHLFYHMKVHSGEREFKCNICNKDFMFKHNLKVHMRTHTGEVSHKCPVCEKGFNASNNMWKHVATHHKDYVRKKGAPVTQKSIENVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -