Cbif015078.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987199.1:10094107-10099754[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.15 6.9 7.5 5.4 2 23 108 129 107 129 0.97 2 23 0.00074 0.034 14.8 4.4 1 23 133 156 133 156 0.97 3 23 0.31 14 6.5 0.6 2 21 176 195 175 196 0.89 4 23 0.29 14 6.6 0.2 3 23 249 270 247 270 0.91 5 23 4.4 2e+02 2.9 3.1 3 23 280 301 279 301 0.96 6 23 0.11 5.1 7.9 1.0 1 19 319 337 319 342 0.90 7 23 2.2 1e+02 3.8 11.9 1 23 352 374 352 375 0.95 8 23 1.9e-05 0.00087 19.8 1.1 1 23 381 403 381 403 0.94 9 23 3.3e-05 0.0015 19.0 1.8 1 23 409 432 409 432 0.96 10 23 0.00095 0.044 14.4 0.4 1 23 440 462 440 462 0.97 11 23 0.0022 0.1 13.3 1.7 1 23 468 490 468 490 0.96 12 23 8.3e-05 0.0038 17.7 1.7 1 23 496 519 496 519 0.98 13 23 9.9e-05 0.0046 17.5 4.5 1 23 533 555 533 555 0.96 14 23 4.3e-06 0.0002 21.8 1.8 1 23 561 584 561 584 0.96 15 23 0.11 5.1 7.9 1.0 1 19 614 632 614 637 0.90 16 23 2.2 1e+02 3.8 11.9 1 23 647 669 647 670 0.95 17 23 1.9e-05 0.00087 19.8 1.1 1 23 676 698 676 698 0.94 18 23 3.3e-05 0.0015 19.0 1.8 1 23 704 727 704 727 0.96 19 23 0.00095 0.044 14.4 0.4 1 23 735 757 735 757 0.97 20 23 0.0022 0.1 13.3 1.7 1 23 763 785 763 785 0.96 21 23 8.3e-05 0.0038 17.7 1.7 1 23 791 814 791 814 0.98 22 23 9.9e-05 0.0046 17.5 4.5 1 23 828 850 828 850 0.96 23 23 4.3e-06 0.0002 21.8 1.8 1 23 856 879 856 879 0.96
Sequence Information
- Coding Sequence
- ATGACTATTTTGTGTTGTGTGTGTCTTAATCCTGAAGCTACCTTTTCTGTTTGTGAGAATAATGGTCAGGAAGTCCAATTTTTGAGCATACTTAGAATTATCGTAGACGATGTGAAATGGGACGAAACATCCTTGCTGTGTGCAAAATGCGTCGAAACATTAAAGATAATATCCAGATTTATTAACTTATGCAAACAAAACAACGTAATTAACTCAAAAACTGAAGCTGACGATTATGACGATTTCCATGGCACGAACGATTCTGGCGAcgattttaacttaaaaacagAAGAATGCGAGGACGCTGACAACATTAACCTAAAATGTGAGTACTGTGAACATAAATTCGAGTGCAAAACCGATTTAAAAGGACATTTACGGACGCATTCAGACATATTTATATGTTTTCACTGTGAGAGACACTTTAACTCAAAAACTGGACTGATTAAACACATTAAAAGTGAACATGAAGATAGTTATTGCGAAGAAATTAAAGAAGAGAGcgaaaatagcaaaaaaccaTGGCAGTGCGACAGATGCTTCCGAAATTACACGTTACAAAAAACGCTAAGCAAACACGCTTTAACCTGCGATGGAATAAGACGCCACAGCAAAGTTAACATCGCAAGTGATCGTAAAAATAAGTGCCATAAGTGTTTGAGGTTATACACAACAGATAAAATACTAAAAGCGCATTTAAAAACGTGTGACGGCAACAAAATAACCATAAAAAGCGCTACCATTTGCAAAATATGCAACGAAACCTTCGATCTAGTGGAAACACGCAATGAACACATCAAAAACGAACACAACATCGACATAACCAACGAAAACCTGTGCAAATACTGCTTTTTCCAGTGCAATTCAGAAGAAGAATACAAACTACACCTCCAAAACAACCATTTAGACAGTTCTCACGGCCCCAAACCCGAAAAAACGCCAGATAAACGCAGATACACATGCGAGGTCTGTGATTTGGAGTTCACGCATGCGCGCAAGGTCGTAGCGCACTGCGCAAGCGTGCACGGTATAGACGCTAAAAAAGCGCGTCCTTACGCATGCGCACATTGCTTCAAACGCTTCATATCGTGCAATCACTTGTGCGAACACGAAAAATACCATCACAGCAACGTACGGAGCCATATTTGTAGCTTTTGCGGTAAATCCTTCGTCACCAAGAGTGATTTAATATCACATGAGTATATTCACAGAAATGTCAGAGGTTACAAGTGCGATCAGTGTTCTAAAGACTTTAATACGAACAAAAATCTGCGCACGCATAAGTTAGTAGTGCATACGGATGCTAGTTTGTGGAAATACGCATGCGCGGAGTGCAACAAGCGTTTCCCGATGAAATCATCATATGACATTCATGTAAAGAGGCATCAAGGTGAAAAACAGTTCACGTGTCACATTTGTGACAAGGCGTTCATTTGCCGTGCTGACATAAGGCGTCACATGGCAGCTCATACGAATATACGTCAGTTTAAGTGTCAACTATGCGGAaaagagtataaaaacaaGGCAGTGTTTGAGCGTCACTTAAAACGAAGTCATGACGTTGGCGACGCGAAGATTCCCGAGCGTGTACGAAAGCACTTCTGTCATATCTGTCCCAAGGCATTCTACGATAGGAATAAGCTAGTACGGCACATGTACACGCATTCGGGTTTGAAGCCGTTTTCGTGTACGATGTGCGATAAAAAGTTCACTGATAAGTCGTACGTGACGCAGCACATGAAACTGGCGCATAATGTGTACAAAGGGGACACTGAGGAGAAATTATTGTACAACAGTTCTACTGCCCCCAAAAACGAAAAAACGCCAGATAAACGCAGATACACATGCGAGGTCTGTGATTTGGAGTTCACGCATGCGCGCAAGGTCGTAGCGCATTGCGCAAGCGTACACGGGATAGACGCCAAAAAGGCGCGTCCTTACGCATGCGCACACTGCTTTAAACGCTTCATATCGTGCAATCACTTGTGCGAACACGAGAAATACCATCACAGCAACGTACGGAGCCATATTTGCAGCTTTTGCGGTAAATCCTTCGTCACCAAGAGTGATTTAATATCCCATGAGTATATTCATAGAAATGTAAGGGGTTACAAGTGCGATCAGTGTTCTAAAGACTTTAATACTAACAAAAACCTGCGCACGCATAAGTTAGTAGTGCATACGGATGCTAGTTTGTGGAAATACGCATGCGCGGAGTGCAACAAGCGTTTCCCGATGAAATCTTCGTATGACATTCATGTAAAGAGGCATCAAGGTGAAAAACAGTTCACGTGTCACATTTGTGACAAAGCGTTCATTTGCAGAGCTGACATAAGGCGTCATATGGCAGCGCATACGAATATACGTCAGTTTAAATGTCAATTGTGCGGAAAAGAGTACAAAAACAAAGCAGTGTTTGAGCGTCACTTAAAACGAAGTCATGACGTTGGAGATGCGAAGATCCCCGAGCGTGTACGAAAGCACTTCTGTCATATCTGTCCCAAGGCTTTCTATGATCGGAATAAGCTAGTACGGCACATGTACACGCATTCGGGTTTGAAGCCGTTTTCATGTACGATGTGCGATAAAAAGTTTACTGATAAGTCGTACGTTACGCAGCATATGAAATTGGCGCATAATGTGTACAAAGGGGACACTGAGGAGAAATTATTGTACAATGCCAAGCCTCAAACTCAAGTAGACCCCCAACAAAAAATAGGGGGCAAAGAACCCACATTATACGTAACCCcaataaaaaaccaaaaacccaTACCACTGCAAACACATGAGGCCAAATCACGTCAAAAACGGGGATTCAAACCAGGCACTGGGCCTTGCAGCAAAAGAACTAATAAAAGTGGATTACCGATTGGAATTGAACCTCTACAAACGCATGAGCGTAGCGCACGCGCAGCTGACACTCCATCTAGCGGTGGAAGTAGGAAGCCTTGTGGAGGCACATAA
- Protein Sequence
- MTILCCVCLNPEATFSVCENNGQEVQFLSILRIIVDDVKWDETSLLCAKCVETLKIISRFINLCKQNNVINSKTEADDYDDFHGTNDSGDDFNLKTEECEDADNINLKCEYCEHKFECKTDLKGHLRTHSDIFICFHCERHFNSKTGLIKHIKSEHEDSYCEEIKEESENSKKPWQCDRCFRNYTLQKTLSKHALTCDGIRRHSKVNIASDRKNKCHKCLRLYTTDKILKAHLKTCDGNKITIKSATICKICNETFDLVETRNEHIKNEHNIDITNENLCKYCFFQCNSEEEYKLHLQNNHLDSSHGPKPEKTPDKRRYTCEVCDLEFTHARKVVAHCASVHGIDAKKARPYACAHCFKRFISCNHLCEHEKYHHSNVRSHICSFCGKSFVTKSDLISHEYIHRNVRGYKCDQCSKDFNTNKNLRTHKLVVHTDASLWKYACAECNKRFPMKSSYDIHVKRHQGEKQFTCHICDKAFICRADIRRHMAAHTNIRQFKCQLCGKEYKNKAVFERHLKRSHDVGDAKIPERVRKHFCHICPKAFYDRNKLVRHMYTHSGLKPFSCTMCDKKFTDKSYVTQHMKLAHNVYKGDTEEKLLYNSSTAPKNEKTPDKRRYTCEVCDLEFTHARKVVAHCASVHGIDAKKARPYACAHCFKRFISCNHLCEHEKYHHSNVRSHICSFCGKSFVTKSDLISHEYIHRNVRGYKCDQCSKDFNTNKNLRTHKLVVHTDASLWKYACAECNKRFPMKSSYDIHVKRHQGEKQFTCHICDKAFICRADIRRHMAAHTNIRQFKCQLCGKEYKNKAVFERHLKRSHDVGDAKIPERVRKHFCHICPKAFYDRNKLVRHMYTHSGLKPFSCTMCDKKFTDKSYVTQHMKLAHNVYKGDTEEKLLYNAKPQTQVDPQQKIGGKEPTLYVTPIKNQKPIPLQTHEAKSRQKRGFKPGTGPCSKRTNKSGLPIGIEPLQTHERSARAADTPSSGGSRKPCGGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -