Cbif003094.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:2734121-2737406[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.003 0.14 12.9 0.7 2 23 20 42 20 42 0.96 2 25 0.37 17 6.3 4.5 1 23 75 98 75 98 0.95 3 25 0.0002 0.0095 16.5 2.6 2 23 105 126 104 127 0.94 4 25 0.0016 0.075 13.7 0.2 1 23 139 161 139 161 0.98 5 25 1.4e-05 0.00066 20.1 0.2 1 23 167 189 167 189 0.97 6 25 0.00048 0.022 15.3 2.1 1 23 195 217 195 217 0.96 7 25 0.048 2.2 9.1 0.1 1 23 221 244 221 244 0.94 8 25 3.9 1.8e+02 3.0 5.0 2 23 255 275 254 275 0.93 9 25 0.00032 0.015 15.9 0.5 2 23 339 361 339 361 0.96 10 25 0.37 17 6.3 4.5 1 23 394 417 394 417 0.95 11 25 0.00019 0.0087 16.6 2.5 2 23 424 445 423 446 0.94 12 25 0.0072 0.33 11.6 0.1 1 23 458 480 458 480 0.97 13 25 1.4e-05 0.00066 20.1 0.2 1 23 486 508 486 508 0.97 14 25 0.00048 0.022 15.3 2.1 1 23 514 536 514 536 0.96 15 25 0.047 2.2 9.1 0.2 1 23 540 563 540 563 0.94 16 25 0.51 24 5.8 2.5 2 23 574 594 573 594 0.93 17 25 0.00032 0.015 15.9 0.5 2 23 658 680 658 680 0.96 18 25 0.64 30 5.5 4.3 1 23 713 736 713 736 0.94 19 25 0.0002 0.0092 16.6 3.3 2 23 743 764 742 765 0.94 20 25 0.0017 0.081 13.6 0.1 1 23 777 799 777 799 0.98 21 25 2.6e-05 0.0012 19.3 0.2 1 23 805 827 805 827 0.96 22 25 0.00029 0.013 16.0 2.1 1 23 833 855 833 855 0.97 23 25 0.048 2.2 9.1 0.1 1 23 859 882 859 882 0.94 24 25 0.51 24 5.8 2.5 2 23 893 913 892 913 0.93 25 25 0.18 8.2 7.3 0.7 1 23 917 940 917 940 0.96
Sequence Information
- Coding Sequence
- ATGGAACCCCAACCAAAGAAACGAAAACGCAAATCCAAAGGCACAATTACATCAAACACATGTCCCTTATGTTCCAAGCAACTAAAACACCCCGAATATGTCCAACGCCACATCCGTGAGGTACACAACCAATCCGCGGTTTCTACGTGCGGTATTTGTGGCCATAAATCGAAAAGCAGGTACGGTGCCAACTTCCACAGTCTAACCCACAAGGAAAAACAACACGTTTGTTCGTTTTGCAACAAGAAGTTTTACCTGAAACACATTTTAGAGAAACATGTCGCGACCACGCATAGAGGCGAGCTCAACGACATGTGTCAGTACTGCGGCATGGCTTTTAAGCACGCTCAAACGCTTAAGAACCATATCGGAAAACACCATGGCGAAGAAGCCGGTGTTGTTAAACCCAAAGAGTACCCTTGTCCCATCTGCGAGTACGTTACTTTCGTTGAGGCGGATTTAAAGAAGCACACCAAGCGTCACCGTAACGAGAAAACTTACGTCTGTACGGATTGTCCCTTAAAGTTCGTATCGCTCTCAGAGTTGAAGAAGCATCAAGGTGTACATTCGGACGAGACTCCTCACATATGTCAGTACTGTAATAAAGGAATAAAACGTTCGTATAGTTTGAAAAAGCACTGGCTAGTTCATAAAGGAGACTACATGTGTAATTTGTGTCCTTTAGGGTTTATTGACGCTCAAGTACTAGCGCATCATTTGTCGTTAAAGCACAAAGGTACACAGTTGGAGGAAAAGTCTCTTGTGTGTCAGTACTGTCATAAGGAAATTAAAAGGTCTTGTTTGAAGAAGCATTGGTTCGTTCATAAGGGAGAGCATATGTttgtgcaaataaaaatagaggAAGCTTCAACGGACGAGGAAGATAACAGTACCAGCAGCAATAATGTCCAAAGCAACGCCTTAGATAATTTAAACAAGGACCAATGTTCAAGCCATGTGGAACACCCTCCAAAGAAACGAAAACGCAAATCCAAAGGCACAATTACTTCAAACACATGTCCCTTATGTGGCAAACAACTAAAACACCCCGAATATGTCCAGCGCCACATCCGAGAAGTACACAACCAATCCGCGGTCTCGACGTGCGGCATTTGTGGCCATAAATCGAAGAGCAGGTACGGTGCCATGTTCCACAGTTTAACGCACAAAGAGAAACAACACGTTTGTTCGTTTTGCAACAAGAAATTCTACCTGAAACACATTTTAGAGAAACATGTCGCGACCACGCATAGAGGAGAGCTCAACGACATGTGTCAGTACTGCGGCATGGCCTTTAAGCACGCTCAAACGCTTAAGAACCATATCGGAAGGCATCATGGCAAAGAAGCCGGCGTGGTTAAACCCAAAGAGTACCCTTGTCCAATTTGCGACTACCTTACGTTCGTTGAAGCCGACTTAAAGAAACATGTAAAGCGGCACCGTAACGAGAAAACTTACGTCTGTACGGATTGTCCGCTAAAGTTCGTATCGCTCTCCGAGTTAAAGAAGCACCAAGGTGTACATTCGGACGAGACGCCTCACATATGTCAGTACTGTAATAAAGGAATTAAGCGTTCGTATAGTCTTAAGAAGCACTGGCTAGTTCATAAAGGGGACTACATGTGTAATTTGTGTCCTTTAGGGTTTATTGACGCTCAAGTACTAGCGCATCATTTGTCGCAAAAGCACAAGGGTACACCTTCGGAGGATGGGCCTTTGGTGTGTCAGTACTGTGATAAGGAAATTAAAAGGTCTTGTTTGAAGAAGCATTGGTTCGTTCATAAGGGAGAGCATATGTttgtgcaaataaaaatagaggAAGCATCTACGGACGAAGAAGATAACAGTACCAGCAGCAATAATGTCCAAACCAACGACttagttaatttaaacaaGGACCAATGTCCGGGCCCTGTGGAACACCCTGCAAAGAAACGAAAGCGCAAATCCAAAGGCACAATAACCTCAAACACATGCCCCTTATGCGGCAAACAACTAAAACACCCAGAATATGTCCAGCGCCACATCCGTGAGGTACACAATCAATCTGCGGTTTCTACGTGCGGTATTTGTGGCCATAAATCGAAAAGCAGGTACGGTGCCATGTTCCACAGTCTAACCCACAAGGATAAACAACACGCGTGTTCGTTTTGCAACAAGAAATTCTACCTGAAACACATTCTAGAGAAACATGTCGCGACCACGCATAGAGGCGAGCTCAACGACATGTGTCAGTACTGCGGCATGGCTTTTAAGCACTCTCAAACTCTTAAAAACCACATCGGAAGGCATCATGGCAAAGAAGCAGGTGTTGTTAAACCCAAAGAGTACCCTTGTCCAATTTGCGAGTACGTTACTTTCGTTGAAGCGGATTTAAAGAAACATGTAAAGCGACACCGTAACGAGAAAACTTACATCTGTACGGATTGCCCGTTAAAGTTCGTATCGCTCTCAGAGTTGAAGAAGCACCAAGGCGTACATTCAGACGAGACTCCCCACGTCTGTCAGTACTGTAATAAAGGAATTAAGCGTTCGTATAGTTTAAAAAAGCACTGGCTAGTTCATAAAGGAGACTACATGTGTAACTTGTGTCCTTTAGGGTTTATTGATGCTCAAGTACTTGCGCATCATTTGTCGTTAAAGCACAAGGGTATACCTTCGGAGGAAGCACCTTTGGTGTGTCAGTACTGtgataaagaaattaaaaggTCTTGTTTGAAGAAGCATTGGTTCGTTCATAAGGGAGAGCACATGTGTAACTTGTGCCCTTTAGGGTTTATTGATGGGAAAGTTCTGGCGCATCATTTGAAGGTTAAGCATAAGGTTAAATAA
- Protein Sequence
- MEPQPKKRKRKSKGTITSNTCPLCSKQLKHPEYVQRHIREVHNQSAVSTCGICGHKSKSRYGANFHSLTHKEKQHVCSFCNKKFYLKHILEKHVATTHRGELNDMCQYCGMAFKHAQTLKNHIGKHHGEEAGVVKPKEYPCPICEYVTFVEADLKKHTKRHRNEKTYVCTDCPLKFVSLSELKKHQGVHSDETPHICQYCNKGIKRSYSLKKHWLVHKGDYMCNLCPLGFIDAQVLAHHLSLKHKGTQLEEKSLVCQYCHKEIKRSCLKKHWFVHKGEHMFVQIKIEEASTDEEDNSTSSNNVQSNALDNLNKDQCSSHVEHPPKKRKRKSKGTITSNTCPLCGKQLKHPEYVQRHIREVHNQSAVSTCGICGHKSKSRYGAMFHSLTHKEKQHVCSFCNKKFYLKHILEKHVATTHRGELNDMCQYCGMAFKHAQTLKNHIGRHHGKEAGVVKPKEYPCPICDYLTFVEADLKKHVKRHRNEKTYVCTDCPLKFVSLSELKKHQGVHSDETPHICQYCNKGIKRSYSLKKHWLVHKGDYMCNLCPLGFIDAQVLAHHLSQKHKGTPSEDGPLVCQYCDKEIKRSCLKKHWFVHKGEHMFVQIKIEEASTDEEDNSTSSNNVQTNDLVNLNKDQCPGPVEHPAKKRKRKSKGTITSNTCPLCGKQLKHPEYVQRHIREVHNQSAVSTCGICGHKSKSRYGAMFHSLTHKDKQHACSFCNKKFYLKHILEKHVATTHRGELNDMCQYCGMAFKHSQTLKNHIGRHHGKEAGVVKPKEYPCPICEYVTFVEADLKKHVKRHRNEKTYICTDCPLKFVSLSELKKHQGVHSDETPHVCQYCNKGIKRSYSLKKHWLVHKGDYMCNLCPLGFIDAQVLAHHLSLKHKGIPSEEAPLVCQYCDKEIKRSCLKKHWFVHKGEHMCNLCPLGFIDGKVLAHHLKVKHKVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -