Cbif005827.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987195.1:4061811-4069085[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00035 0.016 15.8 1.6 2 23 162 183 161 183 0.96 2 16 0.00023 0.011 16.3 6.1 1 23 188 210 188 210 0.98 3 16 0.0006 0.028 15.0 5.9 1 23 216 238 216 238 0.97 4 16 0.0034 0.16 12.7 0.5 1 20 244 263 244 265 0.92 5 16 6.2e-05 0.0029 18.1 0.9 1 23 272 294 272 294 0.96 6 16 0.02 0.94 10.2 0.0 1 23 507 530 507 530 0.90 7 16 5.2e-07 2.4e-05 24.7 5.4 1 23 536 558 536 558 0.98 8 16 4.8e-07 2.2e-05 24.8 4.4 1 23 564 586 564 586 0.98 9 16 0.00032 0.015 15.9 3.7 2 23 593 615 592 615 0.94 10 16 0.00064 0.03 14.9 1.8 1 23 627 649 627 649 0.94 11 16 0.00026 0.012 16.2 5.3 1 23 655 677 655 677 0.98 12 16 2.9e-06 0.00013 22.3 0.5 1 23 684 706 684 706 0.96 13 16 1.8e-05 0.00084 19.8 1.3 1 23 712 734 712 734 0.98 14 16 5.5e-07 2.6e-05 24.6 0.9 3 23 742 762 740 762 0.96 15 16 2.7e-05 0.0013 19.3 0.1 1 23 768 790 768 790 0.99 16 16 0.29 13 6.6 0.6 1 23 795 818 795 818 0.97
Sequence Information
- Coding Sequence
- ATGGATGCTCCACTCTTGGATTTCAGTCGCGTTTGCCGAACCTGCAAGTGTATAACAACAGAGGCAAGGTCAATATTCGAACTACTAGAAAATAGCGAAGATGGTACCCATATTCACGAGATGCTAATGGCCTGTTCTTCTGTAAAGGTGGGTACTGAAGATGGATTACCAGCTATTATTTGCGAGATATGCGTCGAGCAGCTTCAGGGAGCGTATTACTTTCGCAAACAATGCGAAACTGTTGACCACAGTTTGAGGGAGTATGTTAAGACACTTAGGCCTGAAGGCGTCAAGTTGGAACAGTCTGAGGTTTCGAAATACATCGaaaaattgtttaactCGCCTCAACAAGACAGTGAAAATGTTCAAGTTGACGAACCGCAACCAGCGGCCGTGGTGGCAGCCCCTTCGGAAAAGCCTATTTGTCCACCGCCTGCAGTCAGTGACTACATCCAACTTATGGACAACAGCCAAATGGTTCTTACTTGCAGTGAATGCGGAAAAGTGTTCACGACTTTGGAAGGCTTACGCTGCCACAAGAGAATCCATTCCGGCACTTTGTTCAAGTGCAAGTTTTGCGAGAAACAGTACACGCGCCAGAACCACTTGAACCGTCATGAACAGTCGCATCAAAAGAGGAAGGTCCATGTCTGCCGCATTTGCAACAAAACGTTGACACGGTTTGAGCATCTAAAACGACATTTGACGACGCATTTAAAGGAGAAGCCGTTTGCTTGTCCAAGGTGTAAGCGAGGGTTTAACAGGCGGGAACACTTGGATGTTCATGTTTCAAAGTGCAAGGGAGATAGGGTTCATATTTGCGATATTTGTAATAAGGGATTCAATCGAGCTGATAGTCTTGAGCTTCATAAAAAACTGCACGAAAACACCACCCCCATTCTTCCAACGCTTGACAACCTAGACAACATCGAAGACCATTACTTTGAAATCGACTACGATGCTGCAACAGTCTTCTCTGATAATTCCGATAACGAAATGGACGATTGTTTTGAACCGCAGGTAGAAGTAAGAGTTAAAGAACCCGAAGATTCAAAGGTCAAGTTTGATCCTGCTGGAGCTTCAACGTTGACCAAGTCTGAACCCACGGAAGATTCGAAAGATTGGAATAATCGTATTGAAACAGAGGAGTTCATGGCTGAAGATATGGATGATTTTGGAGGTGAGGAAAATACTGCTGAAGACGGGGCAGCGGATTACCCCGAACCTGAGGATGATTTTGATAGAGATGTTGGAGAAGATTTGAATCTTGATGACGCAGGAGATGCTGATGTTAAACCGGAAGCATCTAAATTGACATATCCCGAAGcAGAAGAAGAAGATTCTGATTCTAACCATTCTGAATATTCGCCAACAAAATCAAGTCCAAAATCGCCTCAAAAAAGGGGTCGTGGACGTCCTAGAAAACACCCACCCAAAGAAAGAAGGGGAAAAATTAAGAAGAAATATAAGAAAATCAGAGTTATGTACGATGAGGAAGAGGAAGAAGAGGTAGGCGTTTTCCCTTGTCCTGTTTGCGAACAATTGTTCGCCAAAATGAGCCTCCTTGAAAAGCATGCTTCTGCCGACCATcccaatTCAAAGGTCTTCAAATGCAAAGAGTGTAACAAAGATTTCAGCCGGTCTACACATCTAAAAAGGCATATGCTTTCACATTCTAATATTAAACCGTATCAATGTGAAGTTTGCACTAAAAAATTCTCGCGCAAAGATCATTTGACACAACATATGAAATTGCATTACAAACAACAGGAATGCATTTGTGAGGTTTGTCAAAAACCTTTTCATCGCGCTGATCATCTTGCTAAACATATGGCGTCTAAGCATAATATCGGAgaaaagATTATATCAGAAAAAAAGTTCGAATGCCACGTTTGTGGTAAAACATTCACAACAGAAAAATACCGAGATGTCCACGTCAAAGGCCATGAAGGAAAGAAATGCTTCCAATGCAAAACTTGCGAGAAATCATTCCTGTCCAAATCCCACTTAACAGAGCATATGAAATTCCATAACGAAAACTCGAAGAAATTCTTGTGTTCTGAATGTGGACAAAGATTCATACGGAATGATTATTTGGTCATTCATATGCGAAGGCATCGAGGAGAGAAACCttttaagtgcaaattttgtggaaaaggttttccAAGAACAACGGATCTAACTGTGCACGAACGATACCACACTGGAGAGAAAACTCATTTATGTACCATTTGTGGACGTGGGTTTGGACGAGCTTATAATTTAACAGTTCATATGAGAACTCATACAGgtGAAAAACCATACCAATGCACTTATTGCGATGCTGCCTTTGCACAAGGCAACGATCTTAAAGCGCATGTGCGTCGCCACACTGGGGAACGTTTTCAATGTGAACTTTGCTCTGAAAACTTCCTTATGGGTTATCTTCTTACGCAGCATAAACGAACTGTCCatgGTCTAAATGTGGTAAGCAACATAAGAAGGCTTCAGCCAGTCCAGAAGCTCGATCCAGAAAATCCAAACGAGCCTCCGCCAATAACAATACCGCTTCCCAAGCCCATCATTCCAGAAATGGTAAATGTACCAACTATGGTTACCATGAACCATTTGCACTCCCAACTTACCATTGCCCAGCTTCAACATCACATGGCAACGGAATAG
- Protein Sequence
- MDAPLLDFSRVCRTCKCITTEARSIFELLENSEDGTHIHEMLMACSSVKVGTEDGLPAIICEICVEQLQGAYYFRKQCETVDHSLREYVKTLRPEGVKLEQSEVSKYIEKLFNSPQQDSENVQVDEPQPAAVVAAPSEKPICPPPAVSDYIQLMDNSQMVLTCSECGKVFTTLEGLRCHKRIHSGTLFKCKFCEKQYTRQNHLNRHEQSHQKRKVHVCRICNKTLTRFEHLKRHLTTHLKEKPFACPRCKRGFNRREHLDVHVSKCKGDRVHICDICNKGFNRADSLELHKKLHENTTPILPTLDNLDNIEDHYFEIDYDAATVFSDNSDNEMDDCFEPQVEVRVKEPEDSKVKFDPAGASTLTKSEPTEDSKDWNNRIETEEFMAEDMDDFGGEENTAEDGAADYPEPEDDFDRDVGEDLNLDDAGDADVKPEASKLTYPEAEEEDSDSNHSEYSPTKSSPKSPQKRGRGRPRKHPPKERRGKIKKKYKKIRVMYDEEEEEEVGVFPCPVCEQLFAKMSLLEKHASADHPNSKVFKCKECNKDFSRSTHLKRHMLSHSNIKPYQCEVCTKKFSRKDHLTQHMKLHYKQQECICEVCQKPFHRADHLAKHMASKHNIGEKIISEKKFECHVCGKTFTTEKYRDVHVKGHEGKKCFQCKTCEKSFLSKSHLTEHMKFHNENSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCSENFLMGYLLTQHKRTVHGLNVVSNIRRLQPVQKLDPENPNEPPPITIPLPKPIIPEMVNVPTMVTMNHLHSQLTIAQLQHHMATE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -