Cbif000276.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987193.1:1470341-1476169[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.03 1.4 9.7 0.2 3 21 153 171 151 172 0.94 2 17 0.00017 0.0081 16.7 3.9 1 23 181 204 181 204 0.95 3 17 8e-05 0.0037 17.8 2.3 1 23 211 233 211 233 0.98 4 17 1.9e-05 0.00088 19.7 2.0 2 23 241 263 240 263 0.96 5 17 2e-05 0.00094 19.7 0.5 1 23 269 291 269 291 0.96 6 17 0.00037 0.017 15.7 0.3 2 23 338 359 337 359 0.96 7 17 5.9e-05 0.0027 18.2 0.7 1 23 365 387 365 387 0.95 8 17 2.8e-05 0.0013 19.2 2.7 1 23 393 415 393 415 0.98 9 17 2.7e-07 1.2e-05 25.6 2.9 1 23 421 443 421 443 0.99 10 17 4.7e-06 0.00022 21.7 2.9 1 23 449 471 449 471 0.99 11 17 0.069 3.2 8.5 0.5 1 13 477 489 477 491 0.88 12 17 0.00037 0.017 15.7 0.3 2 23 530 551 529 551 0.96 13 17 5.9e-05 0.0027 18.2 0.7 1 23 557 579 557 579 0.95 14 17 0.0032 0.15 12.7 2.1 1 23 585 607 585 607 0.98 15 17 2.7e-07 1.2e-05 25.6 2.9 1 23 613 635 613 635 0.99 16 17 4.7e-06 0.00022 21.7 2.9 1 23 641 663 641 663 0.99 17 17 6.3e-05 0.0029 18.1 4.3 1 23 669 691 669 692 0.95
Sequence Information
- Coding Sequence
- ATGGATTCAGAAAACCTTGATAAATCATGCAGGTGCTGCTTATCCAGCGAGGATCTAAATTATGTGCTACACGATAAACTATTGGAGGCGTACATGAACATAACTTTGATAAGGGATTTAGACAATGCATTGTCGGATCTTTTATGTTCAGAATGCAACCGCAAGCTACAAAATGTGGTTGAATTTTCAGAAGTATGTAAAAAATCATACGAGTTTTTCAAAACGGAAAGTAAACCTCTTATGGTTATAATAAAGGAGGAAAATTCAAACACATCTCGGGAACCATTTCCTGCGGGTGAAGATGATGCTAATTTTGACGATTTCCCAGATGAAAATTCAGTGGATTATGACGACATCAAAAACGAACAAAAAGAGGatgtaaaaaaactcaaaaaatctAGAACTAGATCCAGAAAAACTCCCCAACCTTCGAGACctcaacaaataaaaacagcgTGCGTGACTTGCCACGAAGAATACCCGAATTTATCTTCTTTAAAGGAACATTACAGGGAAAATGCTGAATGTGGCCCAAGACGACacaaatgtaaattttgcCAGAAAATGTTTAAGGATAATTATCAAATGACTGTTCATATTAACGCAAGGCATTTGGATATTGCCCCAACGTTTTCTTGTGAACAGTGTTCTCTGACTTTTAAATGGAAGAGTAATTTAAAAAGGCATCAAAAGATTCATTCTGGAAATATTGATTACAAAGAGTGTCACATATGCTCACGAAaatttggCCGACAAAGCTCTCTCCAAGAACACATAAAAAGTGTACACTACGGCGTCAAATCCTTTGTATGCGATCAATGCGGAAAAGCCTTTaagaaaaaccaaaatttactCATCCATTCGATTCGCCACAAGGTCAAAAACGAAACAGCAACAgatgaagaaataaaaaaactggtaaAGCACTCATCGCACGACATACTAGAAAACCAGTCGATACAACAAATACACGAAAATATCGTACAAAAACACCCTGAACTAAAAGATTTGGAGTGTAGAGTGTGTGGGAATTTTTATTCAACGAAAGGGGCTCTTAGAACGCATTTAATGTCGCATACCGGTGAGAAGAATTTCTTGTGCACAGAATGCGGTAAAAGTTTCACGACAAAAGGCATTCTCCAATCCCACTCAAGAGTCCACTCAGATGCCAAACCCTTTCAATGTACCACTTGCCCATCTAATTTCCGCCACAAATCAACCCTTCAAGCTCACATGGACATGCATCTTGGAGTTAAATCATACACTTGTGACCTTTGCGGCAAGACTTTTCGACAATTACCTCATTTAAAATACCATATGCGTATGCACTCTGGGGTAAAACCatttaaatgcactttttgcaacaaaaaCTTTGCCAACAACACAAATTTGAAGATTCATAAACGCATTCATACAGGAGAAACACCGTTTCACTGCCCTGTTTGTGGAAAAGGGTTTTATGATTCGGCAACAGacgaagaaataaaaaaactggtaaAGCACTCATCGCACGACATATTAGAAAACCAGTCGATACAACAAATACACGAAAATATCGTACAAAAACACCCTGAATTAAAGGATTTGGAGTGTAGAGTTTGTGGAAATTTTTATTCAACGAAAGGGGCTCTTAGAACGCATTTAATGTCGCATACCGGTGAGAAGAATTTCTTGTGCACAGAATGCGGTAAAAGTTTCACAACTAAAGGAATTCTCCAGTCGCACTCAAGAGTACATTCAGACTCAAAACCCTTTCAATGCACCACTTGCCCCTCCAATTTTCTCCACAAATCAACCCTTCAAGCTCACATGGACATGCATCTCGGAGTTAAATCATATACCTGCGATTTATGTGGCAAAACTTTCCGACAATTACCTCATTTAAAATACCACATGCGTATGCACTCTGGGGTGAAACCATTTAAATGCACCTTTTGCAACAAAAACTTTGCCAACAACACTAATTTGAAGATTCATAAACGCATTCATACAGGAGAAACACCGTTTCACTGCCCTGTTTGCGGTAAAGGGTTTTATGATTCAGGTTCGATGCAAAAACACAAGAAGAAGCACCATTTGGATGagaatttcaaaaaagaagAAATTCCAAACAAGGATTTAATATCTTGTTAA
- Protein Sequence
- MDSENLDKSCRCCLSSEDLNYVLHDKLLEAYMNITLIRDLDNALSDLLCSECNRKLQNVVEFSEVCKKSYEFFKTESKPLMVIIKEENSNTSREPFPAGEDDANFDDFPDENSVDYDDIKNEQKEDVKKLKKSRTRSRKTPQPSRPQQIKTACVTCHEEYPNLSSLKEHYRENAECGPRRHKCKFCQKMFKDNYQMTVHINARHLDIAPTFSCEQCSLTFKWKSNLKRHQKIHSGNIDYKECHICSRKFGRQSSLQEHIKSVHYGVKSFVCDQCGKAFKKNQNLLIHSIRHKVKNETATDEEIKKLVKHSSHDILENQSIQQIHENIVQKHPELKDLECRVCGNFYSTKGALRTHLMSHTGEKNFLCTECGKSFTTKGILQSHSRVHSDAKPFQCTTCPSNFRHKSTLQAHMDMHLGVKSYTCDLCGKTFRQLPHLKYHMRMHSGVKPFKCTFCNKNFANNTNLKIHKRIHTGETPFHCPVCGKGFYDSATDEEIKKLVKHSSHDILENQSIQQIHENIVQKHPELKDLECRVCGNFYSTKGALRTHLMSHTGEKNFLCTECGKSFTTKGILQSHSRVHSDSKPFQCTTCPSNFLHKSTLQAHMDMHLGVKSYTCDLCGKTFRQLPHLKYHMRMHSGVKPFKCTFCNKNFANNTNLKIHKRIHTGETPFHCPVCGKGFYDSGSMQKHKKKHHLDENFKKEEIPNKDLISC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -