Cbif015093.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Cartodere bifasciata
Gene Symbol
-
Assembly
GCA_963920755.1
Location
OY987199.1:10180020-10198683[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 49 0.31 14 6.5 1.3 1 20 168 187 168 189 0.91
2 49 0.00082 0.038 14.6 0.3 2 23 203 225 202 225 0.97
3 49 1.2 58 4.6 0.2 2 21 234 253 234 254 0.92
4 49 0.0003 0.014 16.0 0.5 2 23 267 289 266 289 0.96
5 49 1.2 55 4.7 0.2 2 20 298 316 298 317 0.86
6 49 0.0029 0.13 12.9 2.4 1 23 365 388 365 388 0.94
7 49 0.078 3.6 8.4 2.3 1 23 398 420 398 420 0.98
8 49 0.85 39 5.1 1.2 2 23 437 459 436 459 0.87
9 49 0.73 34 5.3 1.8 1 20 467 486 467 488 0.86
10 49 0.0022 0.1 13.3 0.6 2 23 499 521 498 521 0.94
11 49 2.8 1.3e+02 3.5 3.5 2 23 530 551 529 551 0.91
12 49 0.00047 0.022 15.4 0.9 2 21 562 581 561 582 0.95
13 49 0.00025 0.012 16.2 1.6 1 23 589 611 589 611 0.93
14 49 0.02 0.94 10.2 3.7 1 23 619 642 619 642 0.97
15 49 0.0012 0.054 14.1 0.1 1 23 662 684 662 684 0.95
16 49 8 3.7e+02 2.1 0.5 1 22 781 802 781 802 0.92
17 49 0.35 16 6.3 0.3 1 20 821 840 821 842 0.91
18 49 0.0057 0.26 12.0 0.4 2 23 856 878 855 878 0.96
19 49 0.44 20 6.0 0.2 3 21 888 906 887 907 0.92
20 49 0.00046 0.021 15.4 0.5 2 23 920 942 919 942 0.96
21 49 0.24 11 6.9 0.3 2 23 951 973 951 973 0.92
22 49 0.19 9 7.1 0.4 1 23 1017 1040 1017 1040 0.90
23 49 0.15 6.7 7.5 4.0 1 23 1050 1072 1050 1073 0.96
24 49 1.1 49 4.8 2.6 2 23 1089 1111 1088 1111 0.88
25 49 2.3 1.1e+02 3.7 2.1 1 11 1119 1129 1119 1140 0.82
26 49 0.0079 0.37 11.5 0.7 1 23 1150 1173 1150 1173 0.93
27 49 0.0001 0.0049 17.4 1.9 1 23 1178 1201 1178 1201 0.96
28 49 0.25 11 6.8 0.3 2 12 1212 1222 1211 1225 0.87
29 49 0.0065 0.3 11.8 0.9 2 22 1351 1371 1351 1371 0.96
30 49 4.6 2.1e+02 2.8 2.0 1 22 1389 1411 1389 1411 0.91
31 49 1 46 4.9 0.1 1 20 1431 1450 1431 1452 0.91
32 49 0.061 2.8 8.7 0.9 2 23 1469 1491 1468 1491 0.95
33 49 0.13 6.2 7.6 0.2 2 21 1499 1518 1499 1519 0.93
34 49 2.7 1.2e+02 3.6 2.4 2 19 1536 1553 1535 1558 0.88
35 49 9.9 4.6e+02 1.8 0.1 2 23 1567 1589 1567 1589 0.90
36 49 0.68 31 5.4 1.1 1 23 1643 1666 1643 1666 0.96
37 49 0.14 6.4 7.6 0.0 2 23 1713 1735 1712 1735 0.93
38 49 0.039 1.8 9.3 0.6 1 21 1745 1765 1745 1766 0.94
39 49 0.043 2 9.2 0.1 1 21 1774 1794 1774 1797 0.89
40 49 0.00045 0.021 15.4 2.4 1 23 1802 1824 1802 1825 0.94
41 49 0.00078 0.036 14.7 0.9 1 20 1835 1855 1835 1857 0.95
42 49 0.00019 0.0089 16.6 1.6 1 23 1864 1887 1864 1887 0.97
43 49 0.00035 0.016 15.8 4.1 1 23 1895 1918 1895 1918 0.97
44 49 0.00084 0.039 14.6 3.1 1 23 1935 1957 1935 1957 0.95
45 49 0.18 8.2 7.3 2.7 2 20 1962 1980 1961 1982 0.93
46 49 3e-06 0.00014 22.3 0.2 1 23 1989 2012 1989 2012 0.96
47 49 0.00014 0.0066 17.0 4.0 1 23 2020 2043 2020 2043 0.97
48 49 0.0039 0.18 12.5 2.8 1 23 2060 2082 2060 2082 0.95
49 49 0.00055 0.026 15.1 1.3 1 23 2088 2110 2088 2111 0.95

Sequence Information

Coding Sequence
ATGCCTATGTGTATAGGTATTTGTTGTATCTGTCGTAAAGCAAATTTTACAATAGCTCTAACTCACAATGAACCGAATAGTGTTactattttatcaaaattacaGTGTATTGTCCCAGAACATCAATGGAACGCAGATGAAAAAATTTGCTTGGAATGCTTGGAGCAAGTGAacaattttgctatttttaagAAGCTATGTTTAGCAAGACATTTAAGAGAGCATTCACCACAATTTACTCTCACAAATGAGTCAGAGCAAgttaaaaatgaacaaaaactTCCAGAGGAACATACTTTGCCAAATTTAAGttttgacgtcaaaaatgaagaaaacgaTTGCTCAAACAATAAATGGGACAATGACCCCGAAAGCACTTCTGAAGACAGTAACAACGGTATTTCAGACCCACAATCTGACAAAGAACCCCAAAAAGCATGTCCTAATGTTCCATCTCCCCTACAAGTACAAACAAACCCCACAAAACTTGATCAAAGTAGCCACGCCTGTGACAGATGCGCGCGTTGCTTCACCAGCAAACAAGTGCTAAACGCGCATGCTACGACCACATGTTGTGGCGTCACTAGTGAAAGTGAGGTTAAGTCAAAGTGTCCGCTTTGTTTTCGAGTGTTTGGAAACAAGAACGCGTTAAAAGTGCACGCTAAAACAATACATAACATGAATCTAGATGATGTAAACAGGTGTCAGGTGTGTTTTGCGCAGTTTAGTAACGCGCTGGACTTAAGTGCGCATGTGCACACGCCTGAGGAAGTAGCTGAGGCAACGCTACACATGTTAAGATGTACAGAGTGTGAAGAGACGTTTACAAGCACTGACGATCTCTCACAACACATCTACACGCAACACGACCTCATATGGGAGGGGGAAGCCTCCTGTGAGGTGTGCCACGAGGTATTCACCTCTGGTAAAGACGCTACAAGTCACTATGCATGCGCACATGGTATAAAAGAGACGGCATTAGTGCGGCCTTACTTGTGCGCGTATTGCCCGGGAAGATATGCAATAAGCGatattaaaaatcatattaGGAGCCATTTTATTGTGGATAAATCTTACAAAGAAGTGTGCAAATATAGGTGTCATGTTTGTGGAGAAGGTTTTGCGCATGCGCGATCGTTTGAACAACATTTTACCAGTGAACATGcaaatggaaaaaaaaatccgcACCCGTATAGTTGTGAACATTGTCCTGATAAATTTCAATCTCGTTTAGGACTTTTTAAACACGTACGGTCGCATTTAGCATCTGGCAACATTACAACACTAAATGTTGATAAACCACGCTTAAGTTGTGAAGTATGTAACGCAACCTTCACAAATGTCCAGGACGTAACACAACACTGCAAATCACTACATAACCTCAAAGATTCTTCCATGTACGCATGTCTACACTGCCCACGTCGTTTCTGCGATcctgacgcatgcgcagaacATATTTCAAAGTATTTTCAAATCGAAGAATTGCAAGAGTGTATTTGCGTTACATGTGGCGCATCTTTTACGAATATATGGAATTTAAAAGTTCACGTAAAGTCACAGCACTTAAATGTGAATGAAAATGAATGTATTTGCGATAGATgtggaaaaaaattacgaaaaaACACCTTAAAAACGCATAATATGATTTTCCATCCTGATTTGATCCCACctgataaattaataaaatgcgGCCATTGTGATAAAAGTTTCGGCAGTAACACGGATCTAAAACTGCACCTAAAGTTCGTTAACGGAATAAAGGAACATCAATGTGAAACTTgcggaaaaaaattcagtttATTAGGCAATCTTAAAAAGCATTCTGTCATACACACGACTGACCCTTCGGAGAAATTTGAGTGCCCAGCATGTCACAAGTTATTCAACTTTAAGCAAGATTTAGGACATCATATGAAAAAGGAACATAACCTAGGAAATTCTAAACTGAAAATTACAAAACCCAGAAGTGAAAGAAAACGGAATTATTTGTGCAATTTATGTCCTATGACTTATATTGATAAAAGAGAACTAGAGGACCATATGAATGCACATGCTGACAGTAATTCATCccaaaaaactgttaaaaatgaatgtgaTGATGTGAAAATTGAACATAGTTCTCCAGGAAAACATACTCTACCTAATTTAAGttttggCATTGAGAGCGATTCAAAAGATATATGGGACACTTGGGGCCAACAAAGTTCTTCAGATAGCTGCAATAACGACAcacaatttaaacaaaacatcagAAAAAAACGCACAGCTAAAAAAACCGATCACAAGGCCTATGAATCCAAAACCATCAATCTGACACAAAAACCCGCCAAAAGAAAACGTTTTACATGCCTTCCATGCGGCCGATCCATCGTCAGCGAAACCAAATTCaaacaacacaaaaaaacatgCTTCGGCATTTTAGAACCTCCACAAACAAACTCAAAATTCGATCAAAGTAGCCACGCCTGTGACAGATGCGCGCGTCGCTTCACCAGCAAACAAGTGCTAAACGCGCATGCTACAACCGCGTGTTGTGGCGTCACTAGTGAAAGTGAGGTTAGGACAAAGTGCCCGCTTTGTTTACGAGTGTTTGGAAACAAGAACGCGTTAAAAGTGCACTTTAAATCGATACATAACGTGAATTTAGATGATGTTAACATGTGTCAGGTGTGTTTTGCGCAGTTTAGTAACGCGCAGGACTTAAGTGCGCATGTGCACACGCGTGAGGAAGTAGCTGAGGTGACGCTACACATGTCAAGGTGTTCAGAGTGTGAAGAAACGTTTACAAGCACTGACGATCTCTCACAACACATCTACACGCAACACGACCTCATATGGGAGGGGGAAGCCTCCTGTGAGGTGTGCCACGAGGTATTCACCTCTGGTAAGGACGCTACAAGCCACTACGCATCCGCACACGGTATAAAAGAGCCGTCATTAGTGCGGCCGTACTTGTGTCCGCATTGCCCGGGGAGGTATCGCGTCTCCACGATAAAACCTCATATCAAGGGGCATTTTGTGGATAAACTCAGTCAGATTGAGGTTAAGTATCGTTGTGATGGGTGTGGGGAGATGTTTTTGCACGCGAGGCCGCTTGAAATACATTTTTCTAGTCAACATGCTATTGGAAAGGAAAGTGTTCATCCGTATAGTTGTCGACATTGTTCTGCGAAGAGTACCAGTCTTGGAGGGCTTTTTAAGCACGTGAGGTCGCACCATTTGTCACCTGGAAATGAGgtACCAAATGCCGAAAACCCACTCCTAAGTTGTGAAGTATGTAACGCAACCTTCACAAACGTCCATGACGTAACACAACACTGCAAATCactacataacctcaaaaaccCCACTTTATACGCATGTCCACATTGTCCACGTCGCTTCTGCGCACTTGAAACATGCGCAGAACACATTTCAAAGTACTTTCAATCCGAAGAACCCCAGCACTTTGTTTGCGTTACATGTGGCGCATCCTTTAAGGCGAAACACAGTCTAAAAGTACATGAGGACTCGCAGCATTTAAACATAGAATATATTTGCGATCGATGCGGAAAGAAGTTTAAGAAAAAGCAGTCTTTAAGATCGCATAACAGAATTTGGCACCCTGATGTTGTGCCAGTTGATAAATTGATAAAATGTAGTCATTGTGATAAGACCTTTGCGAAGTTGCAGAGCATTATTCCAGAAGTGGAATGGGAAGAGGACTCTAAGATATGCATAGAATGTTCAGAACTAGTAGAGAAGTTTGtcgagtttaaaaaattgtgcatTAAGTCGAGTTTAAAGTGGAATAACCTTAAAATAGAAACAAGTGATAATAAAGTGAATAGTTTAAACAATATAAATGTGAATACGGCTTCAAATGATGCGCTTCTTGCATTTAATAGCGATGAAACATTGGTCAAACATAGTTCTTTACTTGAACAAGTGCAAACAGATGCGTTTTCGGATGCAGAAGTGGCCCCAAGTGCAAATTCAGACTTTAACGAGTCTGACGACGAGCCTTTACAGAAACTGGTGCAGCCAAAACGTAAGAAAAGACTTGGGAATAGGTGCAACACGTGTGAACTAgcgtttagtaaaaaaatcgaGCTTACTAAGCATAAACGGACATGCTTGGGGCGTAGGAGTAAAAATAGTGccacaaaaaaagtaatagaGAAGTTTTTTTGCGTTTATAACTGCCAACAAAGCTTCCCAGACCAAAATGAGTGcgaaaaacatcaaaaaaccTGCCTAGGACTCTTTAGTTCAAAAACCAAGCGTGCGCCTAATATTGACAGAAGTACGCATGCGTGTGGCACATGCGCACGTCGTTTTACAAGCGAACAAGTCCTAACAGCGCATGTCAGTGTCTGTACCGGCAAAACCGCGCGTCCCTTTGATATTAATGACGTTAGAACTAAGTGTCCGCTATGTTATCGCGTCTATGCAACCAAAATCACATTCAACATCCATTTCACCACAACACACCGCGACTGGGACATCCAAAACACGTGCCAAATATGCCTCAATGTGTTTCCCACTGCACATGAGTTAACTGCGCATGTGCACACCCCTGAGGAAGTGGCTGCAGCAACGCAAAGCCCCCAGCTGCAACAACAGCAATGCGACACATGCCACGAAGTGTTTGATAGCGTACAGGAGCTAGGTAAGCATTGCTTCACCGCGCATGACACAGTGTGGGTGAGTGACGCCACGTGTGAAGTGTGCTTGGAGGTGTTCCCCAGCGATGCGGACGCTGTTCACCACTACAAAGACGCGCATGGCATTGAGGAGGCCATGCTTATACGGCCGTACTTGTGCTGGCACTGCCCGGCACGGTTTAGTCTCCTGGTGTTTAAGACTCATGTCAAGTACAACTTTAAGCGTAAGTTGGCCGCGGCGGCGAGACCGAAGGACGTTAGGGAAGCATCGGATGTTAGGTATGTGTGCGATGATTGCAGGAAGCTGTGTCTTACTAGAAACGAGTTGGAGCTGCATATTAGTAAAGAGCATAGAGAAAAGTATAACGGTTGTGTGCTGATTCAGTGTCGGCACTGCGCGGTACAAAAGTCGTCGGTAAGAGCGTTGTATGCGCATGTGCGTGCGCGACACATGCCTGCCGTTAAACTAAACGCTGATAAGCCGTGTTTGAGCTGTGAGGTATGCGATGCAACGTTTGCGACACTGGAAAGTGTGATGGAGCACAGTGAGACGCAACATAACCTAGAAGGAAGCACAGTTACAGTGTACGCATGTCCGCACTGTCCGTTTAGGTGCGTTACACTAGCTACGTTCAATACGCACATCGCTACGTACTTTGAGGAGAAGGCGCGCTTTGTGTGTCCTACTTGTGGGGCTGATTTTGCCACCAAACAAGGGTTAGGGCATCATGAGGATGCTGTGCATAAAAAACTGACACATATTTGTGAGACGTGTGGAAAGATTTTTCAGAAAAAGCCATATTTAAAGGTACACATAAGAGCCCACCATCCCGAATTACTCCCCCCAGACAAACAATTCAAATGCACAAACCACTGCGACAAAAGCTTCTCTAGCGGCACTGAACTCCAAATGCACATCGACCGTATTAACGGCGTTAAAAACTACGCTTGTCACGCATGCCCTCGAACATTCGTCCGACAAGTCGAACTAAACGTCCACCACCGACGTGTGCACTCCGAGGACCAAACCCGCAAGCACGAATGCCCAGAATGTCATCAGTTCTTCAAGGACAAAGGATACATGAAGTTACACATGAAGAAGGCCCATAATCTGGGCAGTCTTAAGTGGATACCGCGCAGTCAAAGGCCGAGAGAGCATGCCTGCCACTTGTGCTCTAAGGACTTTGTGCAGAAGAGGGATCTTGAGCGACATCTAGACTCACACGCCGGTATTAAGCGATGCACACATTGTGACCGCTGGTTTACCAGTAACTGCGAACTCCAAATGCACATCGACAGAGTTAACGGCGTTAAAAACTACGCGTGCGACGTCTGCCCCCGAAGATTCACCCGCCCAACAGAACTAAACAAACACATGGAACGTGTGCACTCCGAGGACCAAACCCGCAAGCACGAATGTCCAGAATGTCACCAGTTCTTCAAGGACAAAGGATACATGAAGTTACACATGAGGAAGGCCCATAATCTGGGCAGTCTGAAGTGGATACCGCGCAGTCAAAGGCCGAGAGAGCATGCCTGCCACTTGTGCTCTACGGACTTTGTGCAGAAGAGGGATCTGGAGCGACATCTGGACTCACACGCCGGTATTAAGCGATATGCGTGTCAGTTTTGTAACGCGCCGTATGCGAAGAGGGAGAATCTTAAGGCGCATTTAAGAAAACATCATAATTTTGTGTTGTAA
Protein Sequence
MPMCIGICCICRKANFTIALTHNEPNSVTILSKLQCIVPEHQWNADEKICLECLEQVNNFAIFKKLCLARHLREHSPQFTLTNESEQVKNEQKLPEEHTLPNLSFDVKNEENDCSNNKWDNDPESTSEDSNNGISDPQSDKEPQKACPNVPSPLQVQTNPTKLDQSSHACDRCARCFTSKQVLNAHATTTCCGVTSESEVKSKCPLCFRVFGNKNALKVHAKTIHNMNLDDVNRCQVCFAQFSNALDLSAHVHTPEEVAEATLHMLRCTECEETFTSTDDLSQHIYTQHDLIWEGEASCEVCHEVFTSGKDATSHYACAHGIKETALVRPYLCAYCPGRYAISDIKNHIRSHFIVDKSYKEVCKYRCHVCGEGFAHARSFEQHFTSEHANGKKNPHPYSCEHCPDKFQSRLGLFKHVRSHLASGNITTLNVDKPRLSCEVCNATFTNVQDVTQHCKSLHNLKDSSMYACLHCPRRFCDPDACAEHISKYFQIEELQECICVTCGASFTNIWNLKVHVKSQHLNVNENECICDRCGKKLRKNTLKTHNMIFHPDLIPPDKLIKCGHCDKSFGSNTDLKLHLKFVNGIKEHQCETCGKKFSLLGNLKKHSVIHTTDPSEKFECPACHKLFNFKQDLGHHMKKEHNLGNSKLKITKPRSERKRNYLCNLCPMTYIDKRELEDHMNAHADSNSSQKTVKNECDDVKIEHSSPGKHTLPNLSFGIESDSKDIWDTWGQQSSSDSCNNDTQFKQNIRKKRTAKKTDHKAYESKTINLTQKPAKRKRFTCLPCGRSIVSETKFKQHKKTCFGILEPPQTNSKFDQSSHACDRCARRFTSKQVLNAHATTACCGVTSESEVRTKCPLCLRVFGNKNALKVHFKSIHNVNLDDVNMCQVCFAQFSNAQDLSAHVHTREEVAEVTLHMSRCSECEETFTSTDDLSQHIYTQHDLIWEGEASCEVCHEVFTSGKDATSHYASAHGIKEPSLVRPYLCPHCPGRYRVSTIKPHIKGHFVDKLSQIEVKYRCDGCGEMFLHARPLEIHFSSQHAIGKESVHPYSCRHCSAKSTSLGGLFKHVRSHHLSPGNEVPNAENPLLSCEVCNATFTNVHDVTQHCKSLHNLKNPTLYACPHCPRRFCALETCAEHISKYFQSEEPQHFVCVTCGASFKAKHSLKVHEDSQHLNIEYICDRCGKKFKKKQSLRSHNRIWHPDVVPVDKLIKCSHCDKTFAKLQSIIPEVEWEEDSKICIECSELVEKFVEFKKLCIKSSLKWNNLKIETSDNKVNSLNNINVNTASNDALLAFNSDETLVKHSSLLEQVQTDAFSDAEVAPSANSDFNESDDEPLQKLVQPKRKKRLGNRCNTCELAFSKKIELTKHKRTCLGRRSKNSATKKVIEKFFCVYNCQQSFPDQNECEKHQKTCLGLFSSKTKRAPNIDRSTHACGTCARRFTSEQVLTAHVSVCTGKTARPFDINDVRTKCPLCYRVYATKITFNIHFTTTHRDWDIQNTCQICLNVFPTAHELTAHVHTPEEVAAATQSPQLQQQQCDTCHEVFDSVQELGKHCFTAHDTVWVSDATCEVCLEVFPSDADAVHHYKDAHGIEEAMLIRPYLCWHCPARFSLLVFKTHVKYNFKRKLAAAARPKDVREASDVRYVCDDCRKLCLTRNELELHISKEHREKYNGCVLIQCRHCAVQKSSVRALYAHVRARHMPAVKLNADKPCLSCEVCDATFATLESVMEHSETQHNLEGSTVTVYACPHCPFRCVTLATFNTHIATYFEEKARFVCPTCGADFATKQGLGHHEDAVHKKLTHICETCGKIFQKKPYLKVHIRAHHPELLPPDKQFKCTNHCDKSFSSGTELQMHIDRINGVKNYACHACPRTFVRQVELNVHHRRVHSEDQTRKHECPECHQFFKDKGYMKLHMKKAHNLGSLKWIPRSQRPREHACHLCSKDFVQKRDLERHLDSHAGIKRCTHCDRWFTSNCELQMHIDRVNGVKNYACDVCPRRFTRPTELNKHMERVHSEDQTRKHECPECHQFFKDKGYMKLHMRKAHNLGSLKWIPRSQRPREHACHLCSTDFVQKRDLERHLDSHAGIKRYACQFCNAPYAKRENLKAHLRKHHNFVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-