Cbif003103.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:2783980-2790663[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 3.3e-05 0.0015 19.0 0.9 1 23 10 32 10 32 0.98 2 28 0.0029 0.14 12.9 3.7 1 23 38 60 38 60 0.96 3 28 0.22 10 6.9 6.1 1 23 66 88 66 88 0.97 4 28 0.042 1.9 9.2 0.2 1 23 94 116 94 116 0.97 5 28 1.6e-05 0.00073 20.0 1.1 1 23 122 144 122 144 0.98 6 28 2.5 1.2e+02 3.6 0.2 2 14 149 161 148 162 0.88 7 28 0.0059 0.27 11.9 0.1 1 23 312 334 312 334 0.97 8 28 0.008 0.37 11.5 3.3 1 23 339 362 339 362 0.97 9 28 0.00078 0.036 14.7 7.7 1 23 369 391 369 391 0.98 10 28 0.017 0.78 10.5 3.8 1 23 396 418 396 418 0.93 11 28 1.6 72 4.3 4.3 1 23 424 447 424 447 0.94 12 28 0.0059 0.27 11.9 0.1 1 23 627 649 627 649 0.97 13 28 0.0086 0.4 11.4 2.8 1 23 654 677 654 677 0.97 14 28 0.00078 0.036 14.7 7.7 1 23 684 706 684 706 0.98 15 28 0.00048 0.022 15.3 4.4 1 23 711 733 711 733 0.93 16 28 4.7 2.2e+02 2.8 3.8 1 23 739 762 739 762 0.91 17 28 1.6e-05 0.00076 19.9 2.4 1 23 804 827 804 827 0.96 18 28 7.6e-05 0.0035 17.9 1.5 1 23 832 854 832 854 0.98 19 28 0.00047 0.022 15.4 3.8 1 23 860 882 860 883 0.95 20 28 3.3e-06 0.00015 22.2 1.1 1 23 889 911 889 911 0.96 21 28 6.3e-05 0.0029 18.1 1.0 3 23 919 939 918 939 0.97 22 28 2.9 1.3e+02 3.5 0.3 1 8 961 968 961 981 0.76 23 28 1.6e-05 0.00076 19.9 2.4 1 23 990 1013 990 1013 0.96 24 28 8.9e-06 0.00041 20.8 4.4 1 23 1018 1040 1018 1040 0.98 25 28 0.00047 0.022 15.4 3.8 1 23 1046 1068 1046 1069 0.95 26 28 9.9e-07 4.6e-05 23.8 1.0 1 23 1075 1097 1075 1097 0.98 27 28 6.8e-05 0.0032 18.0 0.6 3 23 1105 1125 1104 1125 0.97 28 28 9.6 4.4e+02 1.8 0.1 3 23 1131 1152 1129 1152 0.91
Sequence Information
- Coding Sequence
- ATGACCATCCACACAAACGAGAAGATCTTCAAGTGCAAAATATGCAACAGAACCTTCACCAAGCTCCCTGACCTTGAACTACACTCACGAGTCCACACAACTGACAAAAACTATCTCTGCACCATTTGCGGAAAGGACTTCAACAAGAGCTGCACTTATTACAAACACTTAGAAACCCACAAGGGAAAGAAACGTCACGAATGCAACGTTTGCGGACAATCGTTTCTCCAAACATGTCACTGGAAAACTCACATGGATAGACATGCTGGAATCAAACGGTTTAAATGTGGGTACTGTTTGCAAGCGTTTGGGACCGGGTTTAGTTTAAAAGCACATGAGATGCTGCATACTGGCGTACGGCCGTATCCGTGCCAGTTTTGTGAGAAAGGGTACATTACTAAGGACAAGTTGAGACGGCATATGATGTCCCATGTTGGCGATGTTCCTTGTTTGATGTGCAAGAAGCGTTTCGTGAATTCTGACAAAGAAGCCCGCGATTGCTCAACAGATGTCGTAAATCACGAACatagaaaaaaatgcacaagCAAACACATTGACAAACCTAAGGATAAAACTAGAGACATATctaaagcaaataaaaccccatttaaaaaagaaaatactcCTGTAGGGAAGGCAAAAGTTGCACAAAGAAGAAACAGTCTTAAATATAAGGATACGCTTAAATCAAAGGACGAAATAGTCTCTTTAGATGTAGTAGATGTCACAGAGAAAAGTTGCAAAGCCAAGTCTAAGAATACAACTAAAGGAACACCAATAGCCGAAGAGAAGTCTTGTTTAGAAGAAACAAAAGTCACAAAAAGGCGCTGTCTATCAAAAAATACAACCAATCCAAACAAAACTCcattaaacaaagaaacaacttCTAAAGGAGATACAACAGTAAAGAAAAAGCGATGCAGACGCCGCAATTTCATATGCACAGTCTGCGGCAAGATTCTAACCAGCGACGAAGGTCTAAGCTACCACATGGCATCTCACAACCAAACCTCATTCAAATGCAACCAATGCCCGAAAGTCTATTACTCCATCCACCGTGTTCGAAGACACCAAAGAGAGTCGCATTCCACTACAACAGCTAACCACGTATGTTCTGAATGCGGTAAATCCTTCCAGCACTCGAGCAGCTACCACTACCATTTAAAGACACATAGAAATAAGAAACACGAGTGCGACATCTGCGCGAGGAAGTTTGTACATTTGGGACATCTGAAAGCGCATAAGGACTTTCATGCTGGGCTTAAGCGACATGTTTGTGACTGTTGTCCTAAGGcgtattttaatagttttaagttaaAGGAGCATAAGATGAGAATACATGCTGGTGAAGGTGATTCCGAGTGTTCGGTTTGTTTGGTGAAGTTTTTGAACAAGGATGTAGTAGCGTTGCATTTGAAACattgTGGCACAGAAGACGGCGACTGCTCAACAGATGTTGTAAATTACgaacatgaaaaaaaattcacaagtCAGCAAATTGACAAACCTAAGGATAAAACTAGAGACATATctaaagcaaataaaaccccacttaaaaaagaaaatactcCTGTAGGGAAGGCACAAGTTGCACAAAGGAAAAACATTCCTAAATACAAGGATACGCTTAAATCAAAGAAAGAAAAAGTCTCTTTAGATGAGGTAGATGTCACGGAGAAAAGTTGCAGAGCCAAGTCTAAGAATACAACCAAAGGAACACCAATAGCCGAAGAGAAATCTTGTTTAGAAGAAACAAAAGTCCCAAAAAGGCGTTGCGTATCAAAGAATACAACCAAGCCAAATGAAACTCcattaaacaaagaaacaacttCCAAAGGAGACACaacattaaagaaaaaacgatGCAGACGCCGCAATTTCATATGCACAGTCTGCGGCAAGATTCTAACCAGCGACGAAGGTCTAAGCTACCACATGGCTTCCCACAACCAAACCACATTCAAATGCGACCAATGCCCCAAAGTCTACTACTCCATCCACCGTGTTCGAAGACACCAAAGAGAATCGCATTCCACTACAACAGCTAACCACGTGTGCTCTGAATGCGGTAAATCCTTCCAGCACTCGAGCAGCTACCACTACCATTTAAAGACACATAGAAATAAGAAACACGAGTGTAACATCTGCGGGAGGAAGTTTGTACATTTGGGCCATCTGAAAGCGCATAAGGACTTTCATGCTGGGCTAAAGCGACATGTTTGTGACTGTTGTCCCAAGGcgtattttaatagttttaagttaaAGGAGCATAAGGTTAGGATACATGCTGGTGAAGGTGATACCGAGTGTTCGGTTTGTTCGGTGAAGTTTTTGAACGAGGATGTAGTAGCGTTACATTTGAAGCAACTACAAGCGATAATTTCAAGTCTAAAAGGCGACGAAAAGAACTTTAAATGCGACCAATGCGACAAAGTCTTTCGAAAGAAACACTTGCTGGTTGCACACCAAAAAGACCTTCACTTCGTCCAGACATACGTATGCCAAACATGCGGCAAAACGTTCGGCATTCGAAACACGTACCGTAAACATATGAACATGCACAAAAACGTTAACCGCCATCAGTGTGACATTTGCGGATTGGGTTTCGCGCAGAAATGCAACTGGAGAGAGCACATGGACCGACATCATTCGACAGTCAAACGTTACCTCTGTAACGTTTGTAACAAAGGTTTCTCGACTTCTAAAGAGTTGCGCGTTCATATGAAGTATCATTTAGAAGTCCGACCAAACCCATGCCAGTTTTGTGACAAAAGTTACACATCGGCGTATAGACTTAAGACTCATATGATGTCGCATGCTGGAGAACTACAAGCGATTATTTCAAGTCTAAAGCCAACAacgaaaaaacataaaaataaattcaaatgcCCCATTTGCGGAATACATCAGGAAGATGTTCGAAGCCACATGATATTTGTACACAATAGTAAAGTCGACGAAATGAACTTTAAATGCGACCAATGCGACAAAGTCTTTCGAAAGAAACACTTGCTGGTTGCACACCAAAAAGACCTTCACTTCGTCCAGACATTTGAATGCCATACATGCGGTAAAACGTTCGGCAACCGAAACACATACCGTAAACATATGAACATGCACAAGAACGTTAATCGTCACCAGTGTGACATTTGCGGATTAGGCTTTGCGCAAAAATGCAACTGGAGAGAGCACATGGACCGGCATCATTCGACAGTCAAACGTTACATCTGTAACGTTTGTAACAAAGGTTTCTCGACTTCTAAAGAGTTGCGCGTTCATATGAAGTATCATTTAGAAGTACGACCGAACCCATGCCAGTTTTGTGACAAAAGTTACACATCGGCGTATAGACTTAAGATTCATATGATGTCGCATGCCGGAGATGTGATTTGTTCGATTTGTCTAAGagggtttttaaataatgatagCTTAGAGTTTCATGTTAGACTTATTCATAAAGATTGA
- Protein Sequence
- MTIHTNEKIFKCKICNRTFTKLPDLELHSRVHTTDKNYLCTICGKDFNKSCTYYKHLETHKGKKRHECNVCGQSFLQTCHWKTHMDRHAGIKRFKCGYCLQAFGTGFSLKAHEMLHTGVRPYPCQFCEKGYITKDKLRRHMMSHVGDVPCLMCKKRFVNSDKEARDCSTDVVNHEHRKKCTSKHIDKPKDKTRDISKANKTPFKKENTPVGKAKVAQRRNSLKYKDTLKSKDEIVSLDVVDVTEKSCKAKSKNTTKGTPIAEEKSCLEETKVTKRRCLSKNTTNPNKTPLNKETTSKGDTTVKKKRCRRRNFICTVCGKILTSDEGLSYHMASHNQTSFKCNQCPKVYYSIHRVRRHQRESHSTTTANHVCSECGKSFQHSSSYHYHLKTHRNKKHECDICARKFVHLGHLKAHKDFHAGLKRHVCDCCPKAYFNSFKLKEHKMRIHAGEGDSECSVCLVKFLNKDVVALHLKHCGTEDGDCSTDVVNYEHEKKFTSQQIDKPKDKTRDISKANKTPLKKENTPVGKAQVAQRKNIPKYKDTLKSKKEKVSLDEVDVTEKSCRAKSKNTTKGTPIAEEKSCLEETKVPKRRCVSKNTTKPNETPLNKETTSKGDTTLKKKRCRRRNFICTVCGKILTSDEGLSYHMASHNQTTFKCDQCPKVYYSIHRVRRHQRESHSTTTANHVCSECGKSFQHSSSYHYHLKTHRNKKHECNICGRKFVHLGHLKAHKDFHAGLKRHVCDCCPKAYFNSFKLKEHKVRIHAGEGDTECSVCSVKFLNEDVVALHLKQLQAIISSLKGDEKNFKCDQCDKVFRKKHLLVAHQKDLHFVQTYVCQTCGKTFGIRNTYRKHMNMHKNVNRHQCDICGLGFAQKCNWREHMDRHHSTVKRYLCNVCNKGFSTSKELRVHMKYHLEVRPNPCQFCDKSYTSAYRLKTHMMSHAGELQAIISSLKPTTKKHKNKFKCPICGIHQEDVRSHMIFVHNSKVDEMNFKCDQCDKVFRKKHLLVAHQKDLHFVQTFECHTCGKTFGNRNTYRKHMNMHKNVNRHQCDICGLGFAQKCNWREHMDRHHSTVKRYICNVCNKGFSTSKELRVHMKYHLEVRPNPCQFCDKSYTSAYRLKIHMMSHAGDVICSICLRGFLNNDSLEFHVRLIHKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -