Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987194.1:22597907-22601655[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 6.5 3e+02 2.3 0.2 10 23 3 16 1 16 0.93

2 26 0.00013 0.0059 17.2 0.5 3 23 22 41 21 41 0.98

3 26 3.2e-05 0.0015 19.0 0.6 1 23 47 69 47 69 0.97

4 26 0.00032 0.015 15.9 1.1 1 23 75 97 75 97 0.97

5 26 0.001 0.049 14.3 0.4 1 22 103 124 103 128 0.93

6 26 0.0063 0.29 11.8 2.1 1 23 147 169 147 169 0.96

7 26 0.00027 0.012 16.1 1.7 1 23 174 196 174 196 0.97

8 26 0.13 6 7.7 3.0 1 23 226 249 226 250 0.92

9 26 0.36 17 6.3 4.1 1 23 254 276 254 276 0.98

10 26 0.02 0.93 10.2 0.5 3 23 282 301 281 301 0.98

11 26 2.8e-05 0.0013 19.2 0.3 1 23 307 329 307 329 0.98

12 26 0.00019 0.0086 16.6 1.0 1 23 335 357 335 357 0.97

13 26 1.2 55 4.7 0.3 1 14 363 376 363 380 0.87

14 26 0.77 36 5.2 1.5 1 23 398 421 398 421 0.91

15 26 1.2e-05 0.00058 20.3 1.8 1 23 426 448 426 448 0.98

16 26 0.14 6.2 7.6 2.4 1 23 469 492 469 492 0.87

17 26 7.7e-05 0.0035 17.8 1.4 1 23 497 519 497 519 0.99

18 26 8.8e-06 0.00041 20.8 1.9 3 23 525 545 524 545 0.99

19 26 0.13 5.8 7.7 7.1 1 23 574 596 574 596 0.99

20 26 0.00033 0.015 15.9 0.3 1 23 602 625 602 625 0.97

21 26 5.4e-05 0.0025 18.3 1.9 1 23 630 652 630 652 0.99

22 26 3.1e-05 0.0014 19.1 2.2 1 23 661 684 661 684 0.94

23 26 2.3e-06 0.00011 22.6 0.2 2 23 691 712 690 712 0.95

24 26 0.00022 0.01 16.4 0.8 1 23 718 740 718 740 0.99

25 26 5.6e-05 0.0026 18.3 1.9 1 21 746 766 746 768 0.95

26 26 3.6e-06 0.00017 22.0 2.3 1 23 774 796 774 796 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	6.5	3e+02	2.3	0.2	10	23	3	16	1	16	0.93
2	26	0.00013	0.0059	17.2	0.5	3	23	22	41	21	41	0.98
3	26	3.2e-05	0.0015	19.0	0.6	1	23	47	69	47	69	0.97
4	26	0.00032	0.015	15.9	1.1	1	23	75	97	75	97	0.97
5	26	0.001	0.049	14.3	0.4	1	22	103	124	103	128	0.93
6	26	0.0063	0.29	11.8	2.1	1	23	147	169	147	169	0.96
7	26	0.00027	0.012	16.1	1.7	1	23	174	196	174	196	0.97
8	26	0.13	6	7.7	3.0	1	23	226	249	226	250	0.92
9	26	0.36	17	6.3	4.1	1	23	254	276	254	276	0.98
10	26	0.02	0.93	10.2	0.5	3	23	282	301	281	301	0.98
11	26	2.8e-05	0.0013	19.2	0.3	1	23	307	329	307	329	0.98
12	26	0.00019	0.0086	16.6	1.0	1	23	335	357	335	357	0.97
13	26	1.2	55	4.7	0.3	1	14	363	376	363	380	0.87
14	26	0.77	36	5.2	1.5	1	23	398	421	398	421	0.91
15	26	1.2e-05	0.00058	20.3	1.8	1	23	426	448	426	448	0.98
16	26	0.14	6.2	7.6	2.4	1	23	469	492	469	492	0.87
17	26	7.7e-05	0.0035	17.8	1.4	1	23	497	519	497	519	0.99
18	26	8.8e-06	0.00041	20.8	1.9	3	23	525	545	524	545	0.99
19	26	0.13	5.8	7.7	7.1	1	23	574	596	574	596	0.99
20	26	0.00033	0.015	15.9	0.3	1	23	602	625	602	625	0.97
21	26	5.4e-05	0.0025	18.3	1.9	1	23	630	652	630	652	0.99
22	26	3.1e-05	0.0014	19.1	2.2	1	23	661	684	661	684	0.94
23	26	2.3e-06	0.00011	22.6	0.2	2	23	691	712	690	712	0.95
24	26	0.00022	0.01	16.4	0.8	1	23	718	740	718	740	0.99
25	26	5.6e-05	0.0026	18.3	1.9	1	21	746	766	746	768	0.95
26	26	3.6e-06	0.00017	22.0	2.3	1	23	774	796	774	796	0.98

Sequence Information

Coding Sequence: ATGGGCTTTAACAATCGCAAGGCATTTATCGATCACAGAAACACACATCCAAAAAGAGGTCTTTGCAATTTTTGTGGCAAGGAGTTTTCGCAGAAAGGATTAGAAGCTCACATAAGAACCCATACTGGGGAAAAACCTCACACCTGTGCTACTTGTGGAAAATCCTTTGCAgtgttacaaaatttaaaaatacacgaACGCATTCATACTGGAACCAAACCTCACGTCTGCGAATTCTGTAGTAAAGCATTTACACAAGGAGGTCAATTGATAATTCATAGGAGGTATCATACAAAAGAAAGACCATTTCCTTGCAATCTTTGCGTGAAGAAATTTATATCGAGGACGAAGTTGAACGCTCATTTGCAAATgttaatcaaccattttttatgtttggcGGAAAATCTAGACCATCCGAAGAAGATTAGAATAAGAAGATATGACTGTGATAAATGCACTAAATATTTCCGCTATCGCATGAAACTAGAAGATCATTATCTAGAACATGAAGGGTTTCTTTACAACTGTTCCAAATGTGACCAAGGTTTCCAAACTAAAAAGGAATTGTCCAAACATCTTCAGGATCATCTTGCCAATgcattaaaaaacacaaaaaatgcTGCTAATGCCAACGCCAAAATCGAAGGTCCTCCTAAGAAAATAAGAATTCGAAGATATGATTGCACCATATGTAATGCTCATTTTCGGTATCGTATAAGACTTGAAAGTCACTATGAGGAAAATCATCACACGACCCTTTACAAGTGCATCGAATGTGAAATTGGCTTTAACCATCACAAGACATTTATCGACCACAGAAACACACATCCAAAAAGAAGTCTGTGCAATTTTTGTGGCAAGGAGATTTCGCAGAACGGATTAAAAGATCACATAAGAACCCATACTGGGGAGAAACCTTATACCTGTGCTACTTGTGGAAGATCCTTTGCAGTGTCacaacaattaaaaatgcacGAACGCATTCACACTGGAATAAAACCTCATGTCTGCGAATTTTGTAGTAAAGGATTTGCACAAGGAAGTGAATTGACTATTCATAGGAGGTCTCATACAAAAGAAAGACCATATCCTTGCAACCTTTGCGTGAAGAAATTTATATCGAGagcAACCAAAAGACGAAGTAAGAAAACAATAGAGAAAGATGTTATTAAAAAGGTGCGAAAAAGGAGATTTGATTGTGATAAATGCAAGGCACATTATCGATATCTAATAAAACTGGAAGAACACTACGACCAAGAGCACGAAGAACCAATGTACCCATGCCCTAAATGCAAAGAAGGTTTTAAATCCAAAAAGGACTTCCGGACGCATGTCAAGACACATCCAGCAACGactaaacctaaaaaaatcgAGGATAACCCTTCGGGAAAGAGAAAAAGAGGTTTTAACTGCATTAAATGCGACAAACACTTTCGATACTTAATAAAACTGGAAAAGCATTACGATGAGCTACACGAAGGACCGCTTTATAAATGCTCTGAATGCCAACAAGGTTTCAAAAACAAGAGACCTTATGCTGAACACATGAAAACGCACCCAGAAGTAAACCTCTGCAGTTATTGCggaaaaaagtttaataaacgAAGAGCATTAAAGAATCATCTACGGATACACACTGGTGAAAAGCCTCACGTTTGTTCAACATCAGCAAAAAAGAAACATAGCTCATCAAACGCAACAAAAAAGGAATCCTCCATTTATAAATGTTTCCTATGCGATTTCCAACACAAAACCAAATCCAAATACAACTCTCACATGAGAACACACAAAAACAAGAACAAATACGAATGTAGCATTTGCGATAAAAACTACCTTTACCCATCTGATCTAAAGGAGCATCTCAAAGTCACGCATGGAGGTGAACCTTACGTTTGTCCAACATGTTCCAAACCATTCCACAGTAAAACACCTTTTAAAGCTCACATGCAAACCCATGATCCGAATCATTTGCCCCCGCAGTTTAAATGTGGGCATTGTGACAAGGTATTCCAGAAAAAAAGTAGTTTGCAAGATCATGTTATCAATAATCATACCAAGGCGGATCCTTTGATGTGTACTGTTTGCGGAAAGGTGTTTAAGAATCAGGGAGGTTTGAAAAAACATTTGGTGATTCATTCAGGAGAGAAACAATATGTGTGCGCTACCTGCGGAAGCAGTTTTAACAAGCAGCAAGCTATGAAACGTCATGAAAGAACGCATACTGGGGTTAAACCTTTTATGTGTACGGAATGCGGACAGGGTTTTACAAGAAGAGCAACCCTTAATATACATATGAAATGTCATAAGGATGAACGCGAATTTGTTTGTGCGTTGTGTAATAAGGCGTATGTAAGGAAATCTCTTTTGAAGAAGCACATGCACACTCATGCGGATGAACCGGCTTTTCTTTATAACACAAATTCTGCGGATTTATAA
Protein Sequence: MGFNNRKAFIDHRNTHPKRGLCNFCGKEFSQKGLEAHIRTHTGEKPHTCATCGKSFAVLQNLKIHERIHTGTKPHVCEFCSKAFTQGGQLIIHRRYHTKERPFPCNLCVKKFISRTKLNAHLQMLINHFLCLAENLDHPKKIRIRRYDCDKCTKYFRYRMKLEDHYLEHEGFLYNCSKCDQGFQTKKELSKHLQDHLANALKNTKNAANANAKIEGPPKKIRIRRYDCTICNAHFRYRIRLESHYEENHHTTLYKCIECEIGFNHHKTFIDHRNTHPKRSLCNFCGKEISQNGLKDHIRTHTGEKPYTCATCGRSFAVSQQLKMHERIHTGIKPHVCEFCSKGFAQGSELTIHRRSHTKERPYPCNLCVKKFISRATKRRSKKTIEKDVIKKVRKRRFDCDKCKAHYRYLIKLEEHYDQEHEEPMYPCPKCKEGFKSKKDFRTHVKTHPATTKPKKIEDNPSGKRKRGFNCIKCDKHFRYLIKLEKHYDELHEGPLYKCSECQQGFKNKRPYAEHMKTHPEVNLCSYCGKKFNKRRALKNHLRIHTGEKPHVCSTSAKKKHSSSNATKKESSIYKCFLCDFQHKTKSKYNSHMRTHKNKNKYECSICDKNYLYPSDLKEHLKVTHGGEPYVCPTCSKPFHSKTPFKAHMQTHDPNHLPPQFKCGHCDKVFQKKSSLQDHVINNHTKADPLMCTVCGKVFKNQGGLKKHLVIHSGEKQYVCATCGSSFNKQQAMKRHERTHTGVKPFMCTECGQGFTRRATLNIHMKCHKDEREFVCALCNKAYVRKSLLKKHMHTHADEPAFLYNTNSADL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -