Cbif004831.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- Rreb1_1
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:22606615-22609518[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.81 37 5.2 2.3 1 23 11 35 11 35 0.89 2 22 0.0073 0.34 11.6 1.3 1 23 41 64 41 64 0.90 3 22 7.9e-06 0.00037 21.0 0.6 2 23 70 91 69 91 0.97 4 22 0.004 0.18 12.5 2.7 1 23 100 123 100 123 0.93 5 22 1.9e-05 0.00086 19.8 0.2 3 23 132 152 131 152 0.99 6 22 1.6e-05 0.00074 20.0 2.0 1 23 158 180 158 180 0.98 7 22 1.7e-05 0.0008 19.9 1.5 1 23 186 208 186 208 0.98 8 22 1.5 68 4.4 0.4 1 12 214 225 214 230 0.85 9 22 0.0001 0.0046 17.5 0.1 2 23 272 294 271 294 0.96 10 22 1.4e-07 6.7e-06 26.4 0.3 2 23 300 321 299 321 0.98 11 22 0.0062 0.29 11.8 2.6 1 23 330 353 330 353 0.90 12 22 4.7e-05 0.0022 18.5 0.3 3 23 362 382 361 382 0.99 13 22 0.013 0.62 10.8 2.9 1 23 388 410 388 410 0.92 14 22 8.9e-06 0.00041 20.8 2.8 1 23 416 438 416 438 0.98 15 22 3.9e-05 0.0018 18.8 3.6 1 23 444 467 444 467 0.95 16 22 0.025 1.1 10.0 1.5 1 23 524 547 524 547 0.87 17 22 4.9e-05 0.0023 18.4 0.2 2 23 553 574 552 574 0.97 18 22 0.0006 0.028 15.0 0.2 1 23 583 606 583 606 0.97 19 22 8.2e-05 0.0038 17.8 1.0 3 23 615 635 613 635 0.96 20 22 5.2e-06 0.00024 21.5 0.8 1 23 641 663 641 663 0.98 21 22 5.3e-07 2.5e-05 24.6 0.5 1 23 669 691 669 691 0.98 22 22 0.00085 0.04 14.6 2.6 1 19 697 715 697 720 0.90
Sequence Information
- Coding Sequence
- ATGGGACGGCCgccaaatgaaatgaaattatACGAATGTACGTTCTGTGATTATAAAACTACAAGCACCAGTATCTACAAGTTCAATATTCACATGAACAGACATACGAACACTCTCAAATATCCATGCCCCGAATGTGGAAAAACATTTGACTGCGACTATTCAAGGAATCAACATTTAAACACAGttcattacaaaataaaaaaagaatgtcCTCTTTGCCAAAAATCCTACGTGGATCAATCCTATCTCGATAAACACCTTAAGACTCATGATCCTAACTACAAGAGACCTGAATTCAAATGTGATCATTGTGAGAAGACATTCTTAACGAAAACTGGATTAAATGTGCATTACACATTGATGCACGTTGATTCATTACCTCAAAACTTATGCAGTGTTTGTGGAAAGGCAATGACTACGCCTAGTTCCTTAAAAATCCACATGAGAATACATACAGGAGAAAGGCCTCACAAATGCAAAGATtgtgaaaaaagttttaagaacAGGCAAGCACTTGTTGTTCACGAAAAGGTTCACACTAAAGAAAAGCCATATACTTGCAAGGAGTGCAACAAAGCATTTCCAAGACAAAATTCGCTTTACTTGCACACGAAGTTGCACAAGAGCGAAAGACCTTTTCAGTGTGATATTTGTCAGAAGGCatCAACAAAGCTAAAATCGAAAAAGGTATCACGTccaccaaaagaaattaaggtCTATGAATGTTCTTTCTGCGATTATAAAACCACCGGCAACACTATGTATAAAATCAACATCCATATGAACAGACACACTAACACTTTAAAATTACCATGTCCCGAATGTGGAAAAACGTTTGACTTCGAATCTGCAAGAAATCAACATTTAAACACTGttcattacaaaataaaaaaacaatgtcctCTTTGTCCAAAATCCTTTGTGGATCAATCGTATCTTGAAAATCACATTAAGACACATGATCCTAACTACAAGAGACCGGAATTCAAATGTGACCACTGTGATAAGACATTCTTAACAAGACATGGTTTAAATGGACATGTTACTCTAGCACACGTTGATTCGATGCCTCAAAATTTATGCAGTGTTTGTGGGAAAGCAATGACTACACCCCGTTCACTAAAAAACCACATGAGGATACATACAGGGGAAAAACCGCACGAATGCAAAGATTGTGGAAAATGTTTTATGGTGAAGCAAGCACTTATTTTTCACGAGAAGGTTCACACAAAAGAAAAGCCGTATTCTTGCAAGGAATGCCACAAAGCCTTTCCAAGACAAAACTCCTTGTACTTGCATATGAAGTTGCACAAAGGCGAAAGACCTTTCCAGTGTGATATTTGTCAGAAAACTTATGTGACAAACTCTCAGTTAAAGCAACATTTCCATAAAGTTCACGACCACGTTTCGGAAAATGTCTTatCCCCAAAGGTTAAGTCAAAAAGAATTGGACGTCCACCAAAAGAAATCAAACTTTTTGAATGCATGTACTGTGATTATAAAACCTCAGGAACAAGCATGTACCGAATCAATCGTCATATGGACAGACACACCAACAGCCTTAAACACCCTTGTCCCGAATGTGGAAAAACATTCGACTGCGACTTTGCAATGAACGAACATCTAAACACTCTTCActacaaaatcaaaaaagaatGTCCTTTTTGCCCAAAGTCCTTCGTAGGACAATCGTATCTTGACGAACACATCAAGTCACATGACCCTGATTACAAAAGACCGGAATTTAAATGTGATCAATGCGACAAAATATTATCTACCAGCCTTGGCTTAAAAAGCCATGTTAAAATAGTACACGTTCATAAGGAGCCGCAGCATTTATGCAACGTTTGCGGAAAATCTATGACTACTCCTATTTCACTGAGGAATCACATGAAGATACATTCAGGTGAAAAACCATATAGTTGTGACGAATGTGGCAAACGttttaacctaaaacaatcTCTGATAAGTCACCAGAAGGTTCACACGAAGGAAAAGCCATATCCTTGCAAGATATGTAACAAACCTTTTCCAAGGCAATCATCGCTTTACTTGCATATGAAGTTACACAAGGGGGAAAGACCTTTCCAGTGTGATATTTGTCAGAAAACATATGTGACTATATCGCAGTTAAAACAACATTGTAGTAAAGTCCATAGTCAAATATCGCATAACGTGTTATTAGGATAA
- Protein Sequence
- MGRPPNEMKLYECTFCDYKTTSTSIYKFNIHMNRHTNTLKYPCPECGKTFDCDYSRNQHLNTVHYKIKKECPLCQKSYVDQSYLDKHLKTHDPNYKRPEFKCDHCEKTFLTKTGLNVHYTLMHVDSLPQNLCSVCGKAMTTPSSLKIHMRIHTGERPHKCKDCEKSFKNRQALVVHEKVHTKEKPYTCKECNKAFPRQNSLYLHTKLHKSERPFQCDICQKASTKLKSKKVSRPPKEIKVYECSFCDYKTTGNTMYKINIHMNRHTNTLKLPCPECGKTFDFESARNQHLNTVHYKIKKQCPLCPKSFVDQSYLENHIKTHDPNYKRPEFKCDHCDKTFLTRHGLNGHVTLAHVDSMPQNLCSVCGKAMTTPRSLKNHMRIHTGEKPHECKDCGKCFMVKQALIFHEKVHTKEKPYSCKECHKAFPRQNSLYLHMKLHKGERPFQCDICQKTYVTNSQLKQHFHKVHDHVSENVLSPKVKSKRIGRPPKEIKLFECMYCDYKTSGTSMYRINRHMDRHTNSLKHPCPECGKTFDCDFAMNEHLNTLHYKIKKECPFCPKSFVGQSYLDEHIKSHDPDYKRPEFKCDQCDKILSTSLGLKSHVKIVHVHKEPQHLCNVCGKSMTTPISLRNHMKIHSGEKPYSCDECGKRFNLKQSLISHQKVHTKEKPYPCKICNKPFPRQSSLYLHMKLHKGERPFQCDICQKTYVTISQLKQHCSKVHSQISHNVLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -