Cbif004840.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:22637447-22646231[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.1 4.7 8.0 4.0 1 23 42 64 42 64 0.95 2 32 0.27 12 6.7 2.4 1 23 99 121 99 121 0.97 3 32 9.5 4.4e+02 1.8 0.2 2 13 173 184 172 191 0.82 4 32 8.9 4.1e+02 1.9 0.1 1 23 201 224 201 224 0.93 5 32 0.037 1.7 9.4 6.2 1 20 250 269 250 273 0.92 6 32 5.2 2.4e+02 2.6 0.1 3 23 302 322 301 322 0.93 7 32 1.9e-05 0.00087 19.8 2.1 1 23 629 651 629 651 0.99 8 32 5.8e-06 0.00027 21.4 4.2 1 23 657 679 657 679 0.98 9 32 0.00065 0.03 14.9 7.1 1 23 684 706 684 706 0.99 10 32 0.019 0.88 10.3 4.2 3 23 714 735 713 736 0.96 11 32 0.00029 0.013 16.0 0.1 2 23 741 762 740 762 0.97 12 32 4.8e-06 0.00022 21.6 1.5 1 23 771 793 771 793 0.98 13 32 0.0011 0.051 14.2 0.3 1 23 799 821 799 821 0.98 14 32 1.2e-06 5.6e-05 23.5 0.4 1 23 827 849 827 849 0.96 15 32 5.8e-08 2.7e-06 27.7 1.4 1 23 855 877 855 877 0.99 16 32 0.0053 0.25 12.1 6.0 5 23 886 904 883 904 0.95 17 32 0.04 1.8 9.3 0.6 2 23 995 1016 994 1016 0.92 18 32 0.3 14 6.6 4.7 1 23 1022 1044 1022 1044 0.97 19 32 0.0086 0.4 11.4 1.9 1 23 1050 1072 1050 1072 0.91 20 32 0.00027 0.013 16.1 3.6 1 23 1078 1101 1078 1101 0.98 21 32 0.00037 0.017 15.7 1.7 1 23 1113 1136 1113 1136 0.95 22 32 0.019 0.88 10.3 3.0 3 23 1148 1168 1147 1168 0.98 23 32 2.5e-06 0.00012 22.5 1.1 1 23 1174 1196 1174 1196 0.98 24 32 1.3e-06 5.9e-05 23.4 0.7 1 23 1202 1224 1202 1224 0.98 25 32 0.22 10 7.0 0.1 1 21 1230 1250 1230 1251 0.92 26 32 1.9e-05 0.00086 19.8 2.1 2 23 1372 1393 1371 1393 0.97 27 32 0.0003 0.014 16.0 1.2 3 23 1484 1505 1482 1505 0.97 28 32 0.0013 0.06 14.0 3.7 1 23 1516 1538 1516 1538 0.97 29 32 0.0031 0.14 12.8 0.6 3 23 1545 1565 1544 1565 0.98 30 32 0.00048 0.022 15.4 0.6 1 23 1571 1593 1571 1593 0.97 31 32 7.7e-07 3.6e-05 24.1 2.6 1 23 1599 1621 1599 1621 0.99 32 32 0.0018 0.081 13.6 0.0 1 22 1627 1648 1627 1648 0.96
Sequence Information
- Coding Sequence
- ATGATAAAAAGgtgtCGTGCCATGAGATcgtttaagaaattaatgaaGAAGTTCGACTTGAAACAATGTACAGTTAAGCTTGACAACATTGATGATATTATTCGAAAAAACAGGAAGCAGTCACATATTTGTTACGTTTGTTCGAAAAAGTTTGACTCATtagaatgtttaaaaatccatAAGTCAGTTCATGCCGAAGAAATTACCTTAAGCGACGCGAATGATTCTGATGCAGATAAAACATTATCAAGAGAAAGTGAATCTCCTACAGTAAATACTCGGCGTAAAAAGAACTATACGTGTTATGCCTGCTTGGAAAAATGTTCTTCattagaacatttaaaaatacatcaaGCTATACATGAAAACGAATCATCAAGTGAAGAAACAGGCGAAGAACAAATCATtaagaataagaatacaaGCGCACCGAAACCATTCGAAACAATTAATTCAAATACAGTAATACTACCAAAGATTCAGCCACAAGATCAAACTAAATCTATACCTTTGCTAAAATGTAACACATGTGATACGCTTTTTAATTCTAAGTTAGAAACAGTCCTGCACAAGCCTATGGTTAGCCAAAAGAGTTGTATTTTCATTTGCCTAGAGTGCATGTCAACGTACACAACACCATTGGCTTATCTGGCGCACATGATTCAAAAACACGATTACCCCACTCATGATGCTCATCTATCTGAAAAAGTAACAAAGAGCGTAACAGAAACTCCATCCACATTGAAGTACGAATGTTCTTTTTGTAAGCAATGCTTTGATGATTGCTACCAGTTAAAAAGACACGAGGTGTTCGTACATAAAACCAAAACAAGAAGTAAGAAATCTCCTCAAAACTTTAAGAGTGTCATGAAGAACGTTGCTGATGCTTCGACAATTAACTCATGTGATATCTGTTTCGATATATTTCCTAGTCGATTAGCTCTGTTAAATCACATCGAATTTCATAAAACGCTTGAACCATCAGATGTTACTGCACCTTCCAGTTATGATATTACTAGTCTTGGTGATAAAGAAAAAGCCATACCAAGTGACCATAGTAACGTTAAAGAAAACGCAAAGTCTCTTGTTAAAAAGCGAAACAGAACAAAGAAAGCAAAAAACAAAGTAGTACCAATACCAGTAGAAGTTCCCTCTCAAACTGCAACTCCAGATGATTCAGACGATGATGTACAAATTGTTTGGGAAAGTTTACCACCAAAGAAAACTGTTGAACCTGTAAGCAAACCACTAGCCAAAGTAAAAGACGTAATTGAAACTGAACAGGGTGGTAAATCAGTTGAGGGGGCACCAAGCAATTCATATTCTGCATTGTTTGATAAAATACCTGATGCAGTTAATGCGGGTGTTACAAATTTGGTAGTTACGTCTCAGAGTATTGATTCCTCAACAAATGATGCAccgaataaaataaattcaaatagtTCATTACCCACTGAAAAGGAAACAACTAAGTCAGATGAGGATGACGAAGATCAACTCGTTATTGATGAGAATACTGCATCAACCAGTAAAACAGGaatgcTATTCGAAGACGAATTTTACACCAATGCGTACAACGACATTACTCAAAATTTAAGTGACCACTGCAAATTCCTGATGAACTCATTTGCGGAAAAGTCACTTCCAGAAACCAGCGTTGTTGACAACTTTAATCCGACTGATACTGAACTTCTAAGTTTACTAACGGCTGAAGATGATTGCACAACCATTTTACAAAACATGGCAACAACTGAACATTTTGAAAGTTTTATTGGCATTAATAACACACCTAATAACTTTGGTCCACCGTTAGAACCTAGATTGGAAGTTCCCTACAAGAACATTGTACTAGAATCCGAGAAAAAACCGGAACTGCTCAAACTGTTTAAATGCGAAGAATGTGGCAAAACATACACCACGAAAAAAATACTCAAGAAGCATTTACTAACTCACAACGGGCTGCGTCCCTTTACTTGCAACATTTGCAACAAAACGTTTAAGCATCGCTACGAAGTCACAGCACATCAAAGAAGCCACAACAAACCAAGTTATCAATGCGATATTTGCTCCAAAATGTTTCTCCATAAATCCCACTTAACAACCCATAGAAGAAAACACATTGGAGAATACGTAGCCTTTTGTAAAGAGTGCAGTTTGGGTTTCGTACGCGAAAGTGAGTTCAAGCATCACCAAAACATTAAACACCACAATCGTAAACTTGTCTGTGACATTTGCGGCGCAACGTTAAGCACAACTTCAAGTCTAAAAGAGCACCAATCAACTCATGAACGCACAACTAAAGAAAAGCTCCACGTTTGCGAGTACTGTGGACGCAGCTACATGAATCAAAGAAATCTCTCAGCTCATATAAAAACACATGAGAAATTACATCCATACATATGCCAAATCTGTGGCAAATCTGTAAGCAGTAAGAAAATCTTGGAAACACACGTAAAAATGCACACAGGCTTAAAAGATTTCTTGTGCAATATTTGTGACAAATCGTTTGCCTCGAGCGAGTACTTGACGGTTCATCAGAGGATACATTTCGGCGAAAAACCATTTCAATGTACGACTTGTGGAAAAGCTTTCACTCAGAAAACTTCTCTTACGGTCCATATCAGAACGCATACCGGGGAACGTCCTTATAAATGCGAATGTGGAAAACAGTTTACTACAAAAAGTCACTTGATGACTCACTACAAACACCACGATACTGGAGGAGTTGATATAGATCACATTTCATCAAttcaaaaaaatgaaGTTTTGAAACAGCTTGTTTTTGGATCATCAACGCTGGTCCTACCCGTAAAACCAGATGCAGAAAAAGATAAACTGGCACTTaagccaaaagtaaaaaaactagccaAACCCAGGAAACCCCGCATTCGCACCAAGAAAAAGAACGGTGAAAAAGGCGTCAAAGTAAGAAGGTCAGTCGATCCAGGCGCTGACGACATTGACGATCCAGCCAAACACATCCATTGTGAAATATGCAACGAAACGTTCAAAAACAACGTTGCATTTGGCTTACACAGCCTTTCACATAACGACGACAATAAATACAATTGCCATTTCTGTAACTTCAGAAGCGTCTCCAAATACCACATCGAAATGCATATACGAGCACATGACGGTACTAGCAAATACAAGTGCGAGATTTGCAACAAGGCTTTCACTGTCAGCACTCACGCCATTGAGCATAAATATTTCCACTCGGGCGAGAAACCATTCCAATGCGAAATATGTGGAAAACACTTCATGTTCTCATGGTTCCTTACTTCGCATAGGCGGACGCAACATTGGGAGGTCATTACTGGTACCCCTTTAGTCAAATACGACTGCCCAGTTTGTCAAAAACATTACACCTCGGCGACTGGACTTAAGCGGCATAAATTAAGCCAGCATACGCCAGTTGGTACCGTTAACTTAAGCGTACTATGCGATATTTGTGGAAAATGCCTTTCGAGTAAAGAGAAACTAAAATTCCATCGCAGAATTCATACCGGGTTCAAGCCATTCTCGTGTGAGTTTTGTGATAAGGCTTTTACACGAAAGGAGCAACTGAAAGAACACGAACGAGTGCATACGGGTGAAAAACCGTATATCTGTAAATAttgtggaaagggtttcactCAAAGGTCTCCATTGAGGATACATGAAAGGACTCATACAGGCGAACGTCCGTATATTTGTCGTTTATGTAACAAAGGGTTTATTTCCAAAGGGGTTATGGATGCCCATATTAAGAATTGTACTGCTGGAGCACCACCTGTCTTTTTTGatgcaatGTTCTTACCATCTCTACTAGAACCAATAGTAACCTTGGACGAAGTTACCCAAGAAGTAACACAAAACCTGAACGCCCAAGGAAAAAAGAAACGTGGCCCTAAAAAAGGTTTCAAAAAGCAACCAAAGACAGAAGCCAAGAAAGAAAAAGTGAAACACAAACCAGATCTTAGAATGTTGGACGAAAATGGAGAGGAGATGTTGTTCCAATGCCCTACTTGCAAAAAGGGTGATAAAATGACACTAAAGCATCTCAGGGAACATTACAAGAACGACCATGATGGAAAGCGGTTGCGCACCTCGTTGCTGAGCAACGAAACACAAGAATGTGATATTTGTGGGAAGGAATTCCGCAGTAAACACACTCTAAAAGAACATACTGAGACCCATAGTAACAGCTTCAACTGCGAAGTATGTGGACTAATGCACAAGAAGGTAATCGAACACGTTATTCATATGCGCTCCCACTCGGAGGAAGGCGTCTTCAAATGCATATTTTGCACATTTAGCACGGAAGACATTGTAATAATCACGAATCATGTACAAGGCGACCATGACGACTCGCAAAAGTTCCAGTGTAACCTTTGCATGAAAGATTTTCAACTCTTTTCATGGTTTGTGGAGCATGAGAACTTCCACACGGGATTGAAACCCTTTGGATGTGAGTATTGCGGAAAGTACTTCGTGTACTCGCGGCATTTGTCCGCACATAGAATCACAATGCACCGTGACGAACTAACAATGCTTCCAAAAATGCATGTCTGCGTCATATGCAAAAAAGTCTACCAGCACAAAAATAGTCTGAATCTCCACATGAACAGCCACACGGGTAATTTCGCCATTTGCGACATCTGCGGAAAAATCCTGTCCAGTAAAGAAAAACTTAAGTTCCATTTGAGGACACACACTGGATATAAACCTTTTAGTTGCACCTACTGTGACAAATCGTTCACCAAAAAACCGATTTTGGTGGAACACGTTCGAATTCATACGGGAGAAAGACCGTACGTGTGTGAGTATTGCACCAAGTGTTTTTCGCAAAGGTCGAGCTTGGTGATCCATATTAGATCCCACACTGGGGAACGCCCGTATGTTTGCCCGATTTGCAACAAGGGGTATGTGGCCAAAGCTATGCTGAACATTCATTTGAAAACTTGCAAGGGTGGAATGCAATAA
- Protein Sequence
- MIKRCRAMRSFKKLMKKFDLKQCTVKLDNIDDIIRKNRKQSHICYVCSKKFDSLECLKIHKSVHAEEITLSDANDSDADKTLSRESESPTVNTRRKKNYTCYACLEKCSSLEHLKIHQAIHENESSSEETGEEQIIKNKNTSAPKPFETINSNTVILPKIQPQDQTKSIPLLKCNTCDTLFNSKLETVLHKPMVSQKSCIFICLECMSTYTTPLAYLAHMIQKHDYPTHDAHLSEKVTKSVTETPSTLKYECSFCKQCFDDCYQLKRHEVFVHKTKTRSKKSPQNFKSVMKNVADASTINSCDICFDIFPSRLALLNHIEFHKTLEPSDVTAPSSYDITSLGDKEKAIPSDHSNVKENAKSLVKKRNRTKKAKNKVVPIPVEVPSQTATPDDSDDDVQIVWESLPPKKTVEPVSKPLAKVKDVIETEQGGKSVEGAPSNSYSALFDKIPDAVNAGVTNLVVTSQSIDSSTNDAPNKINSNSSLPTEKETTKSDEDDEDQLVIDENTASTSKTGMLFEDEFYTNAYNDITQNLSDHCKFLMNSFAEKSLPETSVVDNFNPTDTELLSLLTAEDDCTTILQNMATTEHFESFIGINNTPNNFGPPLEPRLEVPYKNIVLESEKKPELLKLFKCEECGKTYTTKKILKKHLLTHNGLRPFTCNICNKTFKHRYEVTAHQRSHNKPSYQCDICSKMFLHKSHLTTHRRKHIGEYVAFCKECSLGFVRESEFKHHQNIKHHNRKLVCDICGATLSTTSSLKEHQSTHERTTKEKLHVCEYCGRSYMNQRNLSAHIKTHEKLHPYICQICGKSVSSKKILETHVKMHTGLKDFLCNICDKSFASSEYLTVHQRIHFGEKPFQCTTCGKAFTQKTSLTVHIRTHTGERPYKCECGKQFTTKSHLMTHYKHHDTGGVDIDHISSIQKNEVLKQLVFGSSTLVLPVKPDAEKDKLALKPKVKKLAKPRKPRIRTKKKNGEKGVKVRRSVDPGADDIDDPAKHIHCEICNETFKNNVAFGLHSLSHNDDNKYNCHFCNFRSVSKYHIEMHIRAHDGTSKYKCEICNKAFTVSTHAIEHKYFHSGEKPFQCEICGKHFMFSWFLTSHRRTQHWEVITGTPLVKYDCPVCQKHYTSATGLKRHKLSQHTPVGTVNLSVLCDICGKCLSSKEKLKFHRRIHTGFKPFSCEFCDKAFTRKEQLKEHERVHTGEKPYICKYCGKGFTQRSPLRIHERTHTGERPYICRLCNKGFISKGVMDAHIKNCTAGAPPVFFDAMFLPSLLEPIVTLDEVTQEVTQNLNAQGKKKRGPKKGFKKQPKTEAKKEKVKHKPDLRMLDENGEEMLFQCPTCKKGDKMTLKHLREHYKNDHDGKRLRTSLLSNETQECDICGKEFRSKHTLKEHTETHSNSFNCEVCGLMHKKVIEHVIHMRSHSEEGVFKCIFCTFSTEDIVIITNHVQGDHDDSQKFQCNLCMKDFQLFSWFVEHENFHTGLKPFGCEYCGKYFVYSRHLSAHRITMHRDELTMLPKMHVCVICKKVYQHKNSLNLHMNSHTGNFAICDICGKILSSKEKLKFHLRTHTGYKPFSCTYCDKSFTKKPILVEHVRIHTGERPYVCEYCTKCFSQRSSLVIHIRSHTGERPYVCPICNKGYVAKAMLNIHLKTCKGGMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -