Cbif004844.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- ZNF134_1
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:22655586-22659959[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.31 14 6.5 0.9 2 21 101 120 100 121 0.94 2 33 0.24 11 6.9 0.2 1 23 140 163 140 163 0.97 3 33 0.015 0.7 10.6 1.1 1 23 167 190 167 190 0.95 4 33 0.017 0.81 10.4 0.1 1 23 196 219 196 219 0.97 5 33 0.0037 0.17 12.5 0.1 1 23 225 247 225 247 0.97 6 33 0.046 2.1 9.1 0.7 1 23 253 276 253 276 0.94 7 33 0.00036 0.017 15.7 2.1 1 23 287 310 287 310 0.94 8 33 0.00016 0.0075 16.8 0.4 3 23 323 343 321 343 0.95 9 33 0.00018 0.0085 16.7 0.7 1 23 349 371 349 371 0.97 10 33 1e-05 0.00048 20.6 1.4 1 23 377 399 377 399 0.98 11 33 0.005 0.23 12.1 0.1 2 23 447 468 446 468 0.96 12 33 1.8 83 4.1 0.0 1 23 489 511 489 511 0.96 13 33 0.92 43 5.0 2.8 1 23 515 537 515 537 0.93 14 33 0.00053 0.024 15.2 0.3 1 23 543 566 543 566 0.97 15 33 0.0046 0.21 12.2 0.4 1 19 572 590 572 594 0.93 16 33 0.0007 0.032 14.8 1.3 1 23 600 623 600 623 0.95 17 33 5.8e-05 0.0027 18.2 1.0 2 23 635 656 634 656 0.97 18 33 1.3e-05 0.00062 20.2 2.2 3 23 669 689 667 689 0.95 19 33 9e-05 0.0042 17.6 0.5 1 23 695 717 695 717 0.98 20 33 5.1e-06 0.00024 21.6 0.2 1 23 723 745 723 745 0.98 21 33 0.00056 0.026 15.1 0.5 1 21 751 771 751 772 0.96 22 33 0.073 3.4 8.5 0.9 2 21 815 833 814 834 0.88 23 33 0.04 1.8 9.3 0.2 2 21 850 869 849 870 0.93 24 33 0.18 8.5 7.2 0.1 1 23 891 913 891 913 0.96 25 33 4.1e-05 0.0019 18.7 2.0 1 23 917 940 917 940 0.97 26 33 0.038 1.8 9.4 0.6 1 23 946 969 946 969 0.94 27 33 0.058 2.7 8.8 0.1 1 23 975 997 975 997 0.95 28 33 0.00078 0.036 14.7 1.2 1 23 1003 1026 1003 1026 0.96 29 33 0.0063 0.29 11.8 0.4 2 23 1038 1060 1038 1060 0.91 30 33 0.0013 0.062 13.9 1.2 3 23 1073 1093 1071 1093 0.96 31 33 9.8e-05 0.0045 17.5 0.8 1 23 1099 1121 1099 1121 0.98 32 33 2e-05 0.00092 19.7 0.9 1 23 1127 1149 1127 1149 0.98 33 33 0.071 3.3 8.5 0.0 1 21 1155 1175 1155 1176 0.95
Sequence Information
- Coding Sequence
- ATGAATCAGAACTTCAAAATGGAGACAAAGCAAGAAGTGAAGAACAAGTTTAGATTTGATGAAGACCTTGATCTTCCTCTTTCCGTCGTTTTAACTGAGTTTTCCTCAAAAGTTATGACCCGTAGCAGATCATCAAAAGTGAAATACATGGAAGAAAGTGACGAAGACTACAacccaaaatcaaaaaagaaaaGCCCAAGCAGAAGCCCTACAAAATCACCAAAAAAAGAACCCAAAACTGAGTTTCCAGAAGAATCAAAACCTGTTGTTTCTGTAAAAATACCCAAGTCTAAAAGATGGCAGTGCAAAAAGTGTTTTAGCTTGTTCAGCACTGAAAGAAAGCTAAAGGCTCATCGCAAAGCGAACAAGGAAGGCAGGACGAATTGTTCATACTTCTACAACGATACCGAACAACTTTACACTTGTGTTATTTGTTCGGCCAAAACTGGCACTGTTGACCAAATGAAGAAGCACGTCATGAAAGAACACGGAGAGAGATTTAAGTGCGCTACGTGCGGAAAAACGTTCGCACTTTTGTTCTTCTATGCGGTACATTTAAAGAACAAACATACGCATGAATCGTGTTACAAATGCCCTGCATGCAACTTCGAGTCTGTAGTCAAAGATGATCTCAGGAATCACATCTCGATTCTGCATCCTAAGCGCACGAAATACCCTTGTGATCTTTGTGGAAGAGTATTTGGTTATCTTATCAGCTATCAGGAGCACAGAAACGAGCACTTGGGAATTAAACCATTCATCTGCGAGGTGTGTAACATGGACTTTGTCGTTTTGCAGAAACTACAAACGCATCAAATACTGTGCCACACCGTGTTGGTTGAAGGGCAGTTGCTTCCTTTCCAGTGTCATTTATGCAAGAAGATTTTTGCTAACACCGAAACTCTGAGCAAGCATATTTCGGACAACCATCTTAAAGAAAGAGACAACGACAAAAAGAAGCATTTATGCGACGCTTGTGGAAAGGGTTTTGCCACAGCTGATAAACTAAGGGTCCATTACCGAATTCACACCGGCGTTAAACCTTTCGCTTGCAGAGGTTGTGAAAAGcgtttttccaaaaaagaCTACTTGGTAATGCATGAGCGGATTCACACCGGTGAAAAACCTTACGTGTGCAACTTTTGCGGAAAATGTTTTAATCAATCAGCTCCTTTAAGAATTCACGAAAGAATGCATACCGGTGAGCGGCCATATGTTTGCGAAATATGTAATTTTGGgtTAAAAATCCGAATTGCACTCAACAAAAAATCAAGAAATAAACACTCCAAGTCAAAAAACCTCATCGACAAACACGACTCAAACAAAGTATACACATGGAGCTGCCGAAAATGCGGCGAAGCCCTTCCTACCAAACGACTACTAGCTGCTCATAGAAAAATCCACGCCAAAGAAAGAAACACAGACATAGAACACACATTTAAATATGATGAAGTACAAGAGCTTTACATTTGCAACACATGCTCAGCAGAATTCCAAGAGGAAGAAGAAGCTGCAATCCACATCAACTCGCACGAAATCGATTATATGTGCGCAGAGTGTGGTCAGGGATTCCACAAGGCATACAACTACGCCTGTCATAGAGCTAAACATCTAGGCGACAACATATTTGTTTGCCCTATTTGTGAATACACCACGAACAAAACCAGTTCTCTACTAACACATATAAACATGATGCATCTGAACAAATATCACTACGAGTGCCAAACCTGCGGGAAGGGTTTCAACGACATTAGTCTTTTCAGAGAGCATGATAATGAGCATTTAGGAATACAACCGTTTGTTTGTGTGGTGTGCGAAAAGAGCTTTAAATTCTCCAAGTATTTGCTGATGCACCAAAAGGCGTACCACAGGGCCACGATCGATGACCAATTAGCTCCAAACCAGTGCACCATCTGCAAACGTATTTTTAGCAAACCTAACTCGCTAGCCACGCATATGAAGCAGCATATTCCGCGTACTGGTCCCCATCCCAAAAAACATCTGTGCGATTACTGTGGACAAGCCTTTTCACGAAAGGATAAACTAAAGATTCATTACCGATTGCACACCGGGGACCGTCCATACTCCTGTTCCTACTGTGGCAAGGGCTTCATTAAACGAGACTATATGATAATGCACGAACGAGTGCATTCGGGAGAAAAACCCTATGTCTGCAGTTATTGCGGAAAATCCTTTAATCAGGGTGCGTCGCTAAGAATTCATGTCAGAGGGCATACTGGAGAAAAACCTTACATCTGCCAGCTTTGCAACAGCAGTTATACCTCGAAGAGTGGTTTAACTAATCATATGAAAAACTGCGTTGGCGTTACTCCACAAATGACCgaagaaaataattatactGGAGAATTTCCTATCGTTGCCTTATCATCAGTAAAGAAATCAACTAAAAAGAATTCCAAATCCCAAAGAACCAAACTTAAATCTTGTTCAAACTGCAATGAAACATTTGCAACAAGCTCGCTTAAAAGGCATCAAAAATCATGCCTAAACGATGGCAGTCCAAAAGTgcgaaaaaagaaaatatggaCATGCACCAATTGTACAGAGGCCTTTTCATCTCTTAAGTTACTATTAGACCATAAAAAAGAATCGTCGTGCAAGAAAAACGGCGAAAAACACAGCTTCAAATACGATGTCATCCAAGAGATTTACACGTGTGGCACATGCTCTGCTGAGTTCCAAGAACAAGATGAGGTTGAGAAACATCTGGAAGGTCACTACGAAAAGTACAAATGTAATGATTGCGGGCAATCCTTTTACACCGCGTACAGCTACTCAGTTCATCAAACTAGAAAGCACCGTACTGACAACCTTTTCGCGTGCGTACAGTGTTCGTACACAACGCCGAACAAAAACACTCTAATGGTGCACATAAAGTTCACGCACATGCGAAAATTCATCTATACCTGCGAAATATGCGCTAAAGGCTTTAACGACGTGGTTCTATACAATGAACACGGAAACGAGCATTTGGGAATACGCCCTTTCATCTGCGTAgtttgtgaaaaagatttcACCTACTCCAGATATTTACGCACGCACCAGATACGCTACCACAAAGTTGGAATCGAGGGCCAACTTCTACCTGGGCAGTGCGGATACTGCAAACGAGTCTTCAGTAAAACGGAGGTCCTAGAAAAGCATATTGTGGAACGCCATTTAAACTTATTCGCACCTAAAGTCAAAAAACATCTATGCGACCTGTGCGGACAGGGATTCTCCCAGAAACCTAAGCTCGACATACATTACCGGAAACATACAGGAATTAAACCATTCAGCTGTAGCTATTGTGCAAAAAGCTTCATTAAAAAAGATTATCTTATAATGCATGAAAGAGTGCATAGTGGGGAAAAACCGTATGTGTGTGGAACTTGCGGAAAATGCTTCAACCAAGGAGCCACTTTAAGAGTTCATGTGAGAAGTCATACAGGCGAGCGGCCGTATGTTTGTCAATTTTGTGAGGCTGGTTTTGCTTCTGGAggtgctttaaaaaaccacATTAAGTCTTGTAGAAACACCTTTGTAccatgttaa
- Protein Sequence
- MNQNFKMETKQEVKNKFRFDEDLDLPLSVVLTEFSSKVMTRSRSSKVKYMEESDEDYNPKSKKKSPSRSPTKSPKKEPKTEFPEESKPVVSVKIPKSKRWQCKKCFSLFSTERKLKAHRKANKEGRTNCSYFYNDTEQLYTCVICSAKTGTVDQMKKHVMKEHGERFKCATCGKTFALLFFYAVHLKNKHTHESCYKCPACNFESVVKDDLRNHISILHPKRTKYPCDLCGRVFGYLISYQEHRNEHLGIKPFICEVCNMDFVVLQKLQTHQILCHTVLVEGQLLPFQCHLCKKIFANTETLSKHISDNHLKERDNDKKKHLCDACGKGFATADKLRVHYRIHTGVKPFACRGCEKRFSKKDYLVMHERIHTGEKPYVCNFCGKCFNQSAPLRIHERMHTGERPYVCEICNFGLKIRIALNKKSRNKHSKSKNLIDKHDSNKVYTWSCRKCGEALPTKRLLAAHRKIHAKERNTDIEHTFKYDEVQELYICNTCSAEFQEEEEAAIHINSHEIDYMCAECGQGFHKAYNYACHRAKHLGDNIFVCPICEYTTNKTSSLLTHINMMHLNKYHYECQTCGKGFNDISLFREHDNEHLGIQPFVCVVCEKSFKFSKYLLMHQKAYHRATIDDQLAPNQCTICKRIFSKPNSLATHMKQHIPRTGPHPKKHLCDYCGQAFSRKDKLKIHYRLHTGDRPYSCSYCGKGFIKRDYMIMHERVHSGEKPYVCSYCGKSFNQGASLRIHVRGHTGEKPYICQLCNSSYTSKSGLTNHMKNCVGVTPQMTEENNYTGEFPIVALSSVKKSTKKNSKSQRTKLKSCSNCNETFATSSLKRHQKSCLNDGSPKVRKKKIWTCTNCTEAFSSLKLLLDHKKESSCKKNGEKHSFKYDVIQEIYTCGTCSAEFQEQDEVEKHLEGHYEKYKCNDCGQSFYTAYSYSVHQTRKHRTDNLFACVQCSYTTPNKNTLMVHIKFTHMRKFIYTCEICAKGFNDVVLYNEHGNEHLGIRPFICVVCEKDFTYSRYLRTHQIRYHKVGIEGQLLPGQCGYCKRVFSKTEVLEKHIVERHLNLFAPKVKKHLCDLCGQGFSQKPKLDIHYRKHTGIKPFSCSYCAKSFIKKDYLIMHERVHSGEKPYVCGTCGKCFNQGATLRVHVRSHTGERPYVCQFCEAGFASGGALKNHIKSCRNTFVPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -