Cbif003121.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:2829942-2831021[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0061 6.4 7.0 2.0 15 39 157 178 149 184 0.77 2 6 7.6e-06 0.008 16.3 1.0 11 41 217 242 207 245 0.83 3 6 0.38 4e+02 1.3 1.9 17 29 249 261 243 273 0.73 4 6 0.00014 0.15 12.2 1.0 3 40 264 298 262 301 0.87 5 6 0.0083 8.8 6.6 1.2 17 39 306 325 299 330 0.72 6 6 0.078 82 3.5 1.6 17 44 332 356 324 356 0.80
Sequence Information
- Coding Sequence
- atgaaaaaagaaaacaccgGACCCGAAACAAGAATAAGCAGACGATCAACAAGACACTCAACtagaaaaagttatttaaacaaagaatCTGACGAAGAAAATAAAGAACCAAAAGAAAATTACGACGACAACCAAATAGACAAAATGGAAGATAACTATATTGGCAAAGTAGAAAACCCAATAGATTACGAAGACGTATCTTTTTCACAGTTAGACTACACCCAATACGACAACTATTCAGACCTGGACTTCAGCGAAGCAGACATAAAAGCAGAGAGCTCAGAATCAGAGATAGAAAAAGTGATGAAACCAAAACGAAAATACGtcaaaaaaaagaaaccagTTAAAGAAGGAGAAAGCTCCAAATCAGAGTTCGAAAAAGTATTCAATCCCAAACGTCAATACATTAGAAGAAAACCAAATGAAGAGCCAAGAAAACGCAAACGAAAATACAACTATTCGAGAGAAAAAACACAAATGTGCAGTTTGTGCGGGAAGGTATACAACTCAGGACATGGCTACAAGTACCACATGAGAATGCACAATAACACAAAACCTGTTAAATGCTCCGACCCAGAGTGTAATAAGACCTTTTACACCAGCGGAACAATGCGTGGCCATTATAGAGACATCCATCTCAACGCCAACGAAAGAAAAACATACGTTTGCCCAACGTGCGGTAAAATCTACAACAGAAGCTCTAATTTTAGTTACCACATGAAAACCCATCTCGAGATAAAAGAGAACGAATGTCAGATATGCTCCAAAAGGTTTACTACGcgcgaccatttaaaagaccacgtactaaaggtccatcaaggTCTTCGGAAGTTTAAATGCAATGTTTGTGACGCCAAATTCAGTAGCAAACCTAACCTAAGACAACATATGATGTCCCACACCGGGGAATACCCGTTTAAGTGTGAAATCTGCGGAAAAAAGTACCCGAGCAGTTATAAAATGCGCACGCATATGCTGTCGCATCGAGGAGATGTTCTATGTAATCTGTGTGACCAAAATTTCGTCAATTTGGACATTTTGAACCTTCACATGAGGACCAAACATAAGGAGAATATGTGA
- Protein Sequence
- MKKENTGPETRISRRSTRHSTRKSYLNKESDEENKEPKENYDDNQIDKMEDNYIGKVENPIDYEDVSFSQLDYTQYDNYSDLDFSEADIKAESSESEIEKVMKPKRKYVKKKKPVKEGESSKSEFEKVFNPKRQYIRRKPNEEPRKRKRKYNYSREKTQMCSLCGKVYNSGHGYKYHMRMHNNTKPVKCSDPECNKTFYTSGTMRGHYRDIHLNANERKTYVCPTCGKIYNRSSNFSYHMKTHLEIKENECQICSKRFTTRDHLKDHVLKVHQGLRKFKCNVCDAKFSSKPNLRQHMMSHTGEYPFKCEICGKKYPSSYKMRTHMLSHRGDVLCNLCDQNFVNLDILNLHMRTKHKENM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00278503;
- 90% Identity
- iTF_00278475;
- 80% Identity
- iTF_00278475;