Cbif004302.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- bab1_1
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:16673900-16688457[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.8e-09 1.1e-05 25.2 0.0 1 39 369 408 369 412 0.90 2 4 1.5e-13 1.9e-10 40.4 0.1 1 39 423 461 423 464 0.95 3 4 2.5e-19 3.2e-16 58.9 0.0 1 45 478 523 478 523 0.97 4 4 1.6e-17 1.9e-14 53.2 0.0 1 39 530 569 530 573 0.94
Sequence Information
- Coding Sequence
- ATGTCAGGGCAACAATACTGTTTACGATGGAACAATTACCAAAGCAATATGACCTCAGTTTTTCACCAGCTTCTTCAAAATGAAGATTTTGTTGATGTTACATTAGCTTGTAATGATATTTCATTAAAAGCTCACAAGGTAGTATTGTCAGCATGCTCTTCTTACTTTCAAAAACTGCTATTGGAAAATCCATGCAAGCATCCTACTATAATAATGCCTCAAGACGTAGGTTACGATGATCTCAAATTTATCATTGAATTCGTATACAAAGGAGAAATCGATGTTTCACAGGCTGAATTACAGTCTCTACTGAAAACTGCTGACCAACTTAAAATCAAAGGCCTTTGTGAAGCACCATCCGACGACAAAGAAAATACCTCAATAAATACACCAACAATATTCGAGTCAAGAGTTACCAAACTTAGAAAATCATCTAGCCCTAAGCAATTTAAGCCATTAGATAGATATagtaaatttaagaaattgcGTCGTGAAGCAGGTCTATTAGGCGAACAAGAGAAAGAAAATAGGGAAAGTGAATTGAGTAGCGAAGAGGAAAATGACATGCCAGTAGCTTTAGACGATCATAAAAGAAAAAGGCTGGAGCCTGAACAAACTAAGCCTTTAAATATGAGTAGCCATGGGATTCTCAGCGGACAGACAATCTTCTCTCAGTTTGGAGTTGACAATGAAGATTTTCCACCTGAACCTCCTGCACCGTCAGCAATACCTGTCGGACATGTTGATTTAAACCACTCGCCCACAAGAAACCTTCTCAATAGTACAATTCATAGGACAGACTTATCAGATTATAAAACACCAcctgaaataaaaaaggaaGTTGTAGATGTGAAGTTTGAAACGTTGCGATCTTATGACCAAGATTCTCTCCTGGAGATGGACTCTCATTCTAGATTATCTGGGCAAGAACATTCCATGGATAGTCATGATGAAGATCGGGATTATAGTAGTGGAATGATGTCAACACCAGACATGATGGGCATGGGCTCTTCCAACTTGGAAATGAACGGAATTAATGAGGCCAAAAATGATCTAAACGATGGACTTGGACACAGATCTCATGTTGGAGGTCCGAAGTCTTGGACACAAGAAGATATGGAAATGGCGTTGGATGCCCTCCGGAATCATAATATGAGTCTTACTAAGGCTTCAGCCACATTTTGCATTCCTTCGACTACACTTTGGCAAAGAGCTCATCGGCTTGGAATCGACACACCAAAAAAAGAAGGTCCAACCAAATCCTGGACAGAAGAAAACCTGAACAGCGCCTTAGAAGCTCTACGATCGGGCACAATATCTGCCAACAAAGCGAGTAAAGCATATGGTATTCCAAGTAGTACTTTGTACAAAATAGCCAGAAGAGAAGGAATCCGTCTAGCTGCGCCTTTTAACGCAGCTCCCACAACATGGTCTCCGGAGGATTTAGAAAAAGCATTAGAGTCTATTAGATCTGGACAAACATCAGTTCAAAAGGCATCTACTGAGTATGGAATACCGACTGGAACATTGTACGGGAGGTGTAAACGGGAAGGAATTGAATTATCTAGGTCTAACCCCACGCCTTGGTCGGAGGATGCCATGAACGAAGCTCTGGAAGCTGTAAGGTTGGGTCACATGTCTATAAACCAGGCTGCAATCCACTACAATTTGCCATACTCTTCACTTTATGGACGGTTTAAGCGAGGAATAAAGTACGATTCTGACAATATTGAGATAAATTCAGATAGTCAGTCCCATTTAGATGCACAGTTTACTGTTGGAATGGAATTTACCAATTCCCATCAACAGATTCAATATCCCAATCAATCGGATAGCTGA
- Protein Sequence
- MSGQQYCLRWNNYQSNMTSVFHQLLQNEDFVDVTLACNDISLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVGYDDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEAPSDDKENTSINTPTIFESRVTKLRKSSSPKQFKPLDRYSKFKKLRREAGLLGEQEKENRESELSSEEENDMPVALDDHKRKRLEPEQTKPLNMSSHGILSGQTIFSQFGVDNEDFPPEPPAPSAIPVGHVDLNHSPTRNLLNSTIHRTDLSDYKTPPEIKKEVVDVKFETLRSYDQDSLLEMDSHSRLSGQEHSMDSHDEDRDYSSGMMSTPDMMGMGSSNLEMNGINEAKNDLNDGLGHRSHVGGPKSWTQEDMEMALDALRNHNMSLTKASATFCIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRSGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLEKALESIRSGQTSVQKASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEINSDSQSHLDAQFTVGMEFTNSHQQIQYPNQSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00278302;
- 90% Identity
- iTF_00278302;
- 80% Identity
- iTF_00278302;