Cpal008661.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000112.1:559849-569768[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.3 18 6.2 0.2 2 21 1471 1490 1470 1491 0.87 2 7 8.1e-05 0.0047 17.4 0.5 2 23 1602 1623 1601 1623 0.95 3 7 0.001 0.059 14.0 4.1 1 23 1641 1663 1641 1663 0.97 4 7 0.005 0.29 11.8 4.2 1 23 1700 1722 1700 1722 0.98 5 7 0.14 8.4 7.2 8.7 1 23 1745 1767 1745 1767 0.94 6 7 0.0097 0.57 10.9 0.3 1 19 1791 1809 1791 1812 0.94 7 7 0.73 43 5.0 0.3 5 23 2169 2188 2166 2188 0.88
Sequence Information
- Coding Sequence
- ATGGATAGAGTGAACCAGTTGCGAGGCGATGTTGTCGCCTCGCGTGAATCAACGCTGAACGCATCGTCCCTGACGGGCGACGCTTACGCGACAGCTGACGAGGGTTCCAAGTATTTTTCCCTGTCAGAAGTAGATTCCAGTACCACCGAATCGCCTCCGAAAGGCCCAGATGCGAACGACGACAGCGTATCGGAGGCCGAACGCATCATATCCAACTTATCACCGATTCCCAAGAAAGGCGAGTTAGATGGCTTCAAAATTGGGCAAAGAATTGAGGCGGCAAACATATTATCTGGTGGTGTCAACATCTTTGATGACAATGAAAACTCGTGTGACGAAGATGAACTGGTCATAGACGATGCTGTTCAAGAATCAGATGAGAAGCCAGCTCAAATGAAATTGGATGATACAGAAGATACTTTTGAGAAAGGAGACCAATTAGGTGATAATGTGGTATATACCGAAGCTGTTTGCCTTAGCAAAGATACGGGAGTGATGCTATTGATTGATGGGAAAAATGTTGATGCAATCGCCATTGGCAATGGACTGTATTTGTATAGAAATCAAGGTGAGGAGGAGCTAGCTGCAATTCAAATACTGGACAACAGTAAGCAACACTCGGACTGCAAGTTTCTCAAAGTGCGTGAGAATGCAGAAGGAAATTTGGAAGTGTATGAAGAGATTGAAGTAGAAGTCCAAAAAGAAGTGcCTATTAAGCCAGGGAAGACACTCAAAAACGCTTCTCGCGTTCCTGAAAAAATTAAGGATAAAGTCAGTGAACATGAAAGCCAGAGAGTTACTGAAAAGATAAGTCAATTAAAACCAAAACTCACCACTACTGTAAACGAATCAAATTTAGTTTTGAATAAAGACGATACTCAAGTAGATCCTAAAACAGAAGTAAATTTTAATGGTAAAATGATAAAATTCAGTGAATCTCGGAAATCTccattagtaggtacttttactCCCATGACGTATCACTCCACTCCCAATAAAGAAGGTATTCCACTCACTAAAACAATGGTTGATCTTCAACTGCATCCTAATAGGCACTCAGAAAATGTTAAAAAGACTATTGAAGTACACACAGATAATTGCAAACAAAGAATATTGGAGACACCAATCAAAACTACCAACCATAAGGAGAGCTCGGAATGTGATGTTAAAAATGATAAGACTGAAAAAAGTGACGTTCGAAAACATAGCCAGTTAGAAACAGCTCGGGATGATGTATTATTACAATCAACAGGATCTACTGAAAAAGATCTTCACGAAGGCTCAAAACCTGCAGAATTGAAGCAAACTGTTAATGAGATGAAAGATAAACATAAAATCCATGAAAATTGTACAAAAACTGTTGATGAAAAAATTGAAGGCACTAATACTAATGACTCAAAAGTCACAGATGTTCCTAAGGAAGAGACTAATGCACTAATGGATTCTAAACAAGAAAGTAGCACAGAAATAACTCCAAACAAATTGGTTGATGATATAAAAGATAGTATAAATAATGTTGCAGTCAACTCATCTCACGAAGATAGTTCAAAGACACAATACAGTACATGCAGTAAGCCAACCGACCAATTGgaaaaaacaatagaaaattCACACAATGATGTTGATGTAAAGGTTGATAtcgaaaaagaacagaaaaataTTCCCGAAAATAGATCAGTTATCTCGCCCACTATTGAAAATTTTAGTGAACAACAGAACATAACTCAAAATGTAATAAAACCACTAGAAGTATTAGATAGCTCAGCTACTGTAGGCAATAATACATTTAAGGATGGCAATCTATCCATTCATATATCTGATGGTAAATCTTGTGATGCAAAAATTAAGACAAATTTAGAAAATGAAACTACGATCGACACAAAACCAGTAAAAGATGAATCAATTAAGACTTTGAGCAATTTATCTAAAGTTCTCGAAACAAAAAATGACACATCGGTAAAAAAACATGAAGTTCCTTTAAATATATCGAGGACTTTACCTaaagaagaaaatttaaaaCCTATAAGTGATTTGAAACAGTCTTCGAATGAGAGTAAGGTCATTAAAGAAGTACGAGCGAATAAAAGTGAAATTAAGCAAGTACCCGACCTACTTGAGAAAGTAAATCCTTTACCTTCTTCAGATTTAAAAGCGCCTAATCGTAACCAAGCGTCAGTTGAAAGTAAAAAGGATCTGGGGAAAGAAAGCAAGCTCCCAATGCCCAAACCTATCAATAACAATATAGATGAGGTTCCATTTGGACAGTGGACGGACGCTAATAGACAAGAATTTCTGAACAAACTAAAGGAATCAAAAATACCAACAAATGCTTCAAATTCAAAGCAACTTAAACAACCAAATGATTTAAACAGAAGAGATGTGCTACAAAAAATTGCAAATCAAAGACATTCTAACCTTATCTCAGCAAAAGTACAAGAATTAAATGCTCTAAACAAAAGTAGAGCTAAAAATGATACACCAGCCTTTTTAAACAAAGTAAATGTTACTCAGAAAGAAATGAATAAGGACAATAAGGTTTCACCATCAACACATAAGGTAGCAGACACTGTTCCTAAAGTTCAGATAGAAATGAAGATAGGAGAAGTTAAGAAAGTTGATAAAGAAGTACCTCAGCAAGTTATTCCTGTATGCAGTTCGACTACTtctttaaattctaaaaaagATCCTGTACATcgcaaagaaataaataatcaagatTTAATTGACAAGACTATTGAAGGTATTATAAATAGGGCAGTTACAGCCAAGTTAGGCCAAGATGATGTAAAACAAAATGTTGAACATGCAGATAAGGCACTAAACCCAAATTCTTACCCTGTATCCCTTGATGAAATTGAATCAAAGATGAATGAATTACATGGCATCCCATTTGTAGAAAGACCTCCCCATGAACTACCTCAAGTAGTCCCAGAAAACCATGAAAACAAAACTTTTGCAATAGCTGATACACCTGTGTCAAGCAAACCTTCAATAGTAGCtgacaaaataccttttaccaaCATACATGAAGAGAAAAATGATGAAACAGCCAACCAAGCCATTTCTCGAACTAATGAAGAATCTGACGAAGAAATTATAGAACATGAGCCTATTACGGGAGacattgaattaaatttaaaaaatgcactAGCCCCGCCGTTGAAGGATAAAAAACTTCCACAGACATCCACTACCACTAAACCAAATATTGATTCGAAGAAAGAACCTATAATAACAGAAAAAGAGTTTGACAAATTTGCTAGGAGAAATTCAATTACATATGAAAACCGTCTTACAGTTAATTTTGATAGCAAAGAACATCACAATGTGATACAAACTGTGGTTGAAAAAGAAGTCGTACCGAAGAAACTGTCTAGAAATGAAATAATGTTGGCAGAATCAAAAGCTAAATCTTATAAGAACTTAGCTCTGCGACATAATTTTCCTTCTAAGACACCAACTACCGTAAAATTAACGAACGACGAAGATTTATGCAATAGGAACTACCAATCTAAGGTTCAAATCGCATACCAATCCGCAATGACAGCAAAAAAACAACAAGGATCTCCTATAACTATCATTGAAGACAAGCCCGTTAAAGTTGTTTTCATGGATACGAACCAAGAAGTTTCGCCGCATCAACTGAATGTTCAGGATAAGGAGTTATCTCCGCCTAAGAAAACTGTAACAGAGTGGGATCATTTTACTCATAGTAACTCTGAATCATTGGATTCAGATACCATAGATGCTGGGTACGATAGTAAGTCTCAAGACGATACCAAGTTTAAAAGCAAACACCAGAGGAAACAAGTTTTAACACCTGTTGAAGTTCCTGAGTTAGAACTGATCGAACCCAGAGACTTAGGCATCGAAGCTTCCCCCAAGAAAAAGCGTAAAGTTGAAGATAGTAAAACGGAGAAGAATGCAAAAACTCTGGTACCGAAGAaaacttacctacttaatagaAACATTATAGTTGATGAGACAGCCCCGAAACCTAAAGAAGTAACCGATACTGTGATTGCGCTAGAAGATCAGCCAGCTAATGCtcaagatttatttgtaaaacgTGCAGATGCTATATCGGCGATAGATAATCTAGTGAAAGCTGCAGAGCTTCTAGAAACTCAGTCTGAAAATAAACACGTATTACCACCAAATGATCAGAACTCGCCAAACAATCAAATGACTCCTGTCAAGCGTGGAAGAGGCCGTCCCAGAAAATATCCACTTCCCCAAGTAGACAATAAGAGCCCCAGCCCTGTCAAGAAACCAACCCCACAAAAGAAACCACGTTTGATAGATGCTAAGATTGCAAAATATGAAACAGACTCTGAGGATGACGAAGTCGATAGTAACGGCGAATTGGTGAAGGAAAATTGGACTATGGggaaaattaacgagaacattGTTTGCCCTATATGCAACAAATTATTCCGTTCTGAAAATGTTGTATTTAAACATGTAAAACACTGCACAGGGCCTTCGCCAAATAGGTCTGATTCTGATAAGAGGAGTCCAAGGAGAATGAGACATTCTCAAGAATTGGATTGGAAATCCGAAGGGAGCAAATCCGACAGCATGGACGTTGATGATGACTATGAAGAAAATAAACCAACTAAGAAAAGAAAATCCAAGGAAAGGAAATCAATTGATGACAAACCTGAAGTAATCATCATCGAGGATACACCACCTGTTAAGTTACAAGAAGTTACAACTATTAAAAAACGTGATAAAGTAAAGCAGGAATTAAATAGAACCACGATCAAATCAAAAATTCCTAATAGAATAACCAGTAACCTTGTTTGTGAGTCTTGTGGCAAAACATTTAGACAACTATCATATCTGGTCAATCACAGATTACAACACAAGGAGGCGGAAACAAAGAAAATTGAAAAGGATCAAATTCATAAGCCTCTCTTTAGTTGTGAAATATGTAAGAAGGAATTCAGAAAACTACATCATTTAGTTCAGCATCGAATAATTCATAATCCTAATCCAATGAATTCTAGATCGTCCATAAAAAGTTCTTTGGAGCAAAGTGACACTAAATCTATAAAAGATGCTTCCAAGCCTAACGAGGACCAGAGCGCAGGTTTCAGATGCGAACCTTGCGACAAATCGTTTAGAAAACTGCATCACCTGGTAGAACACAGGGAGACTCATGatgaaattaataagaaaaatattacagTTGCTGATATAACGGACTCAACGAAGCCAAACGCGTTGCACCACTGTGACGTTTGTAAaaagacatttaaaaaattagaGCATTTAATTGAACACAAGGAACATCATTTAGACACATGCTCGGAAAAATCAGATGACAAAAGTGTCAAGAGTTCACTGTCGACAAAGGACATAATACATGAATGCCCACTTTGTTATATGGTCTTTCCCAATGAACACTCCTTGaccaaacataacataatatgtcAGAGGAAGAAGAAACAGTCTGCTGCGAAGCAAGCTAAGCAAAAGACTGAGAACAACACCGACATCATTGATGATGAAGCTACAGTAATTGAAGCGGACGAGGATAATGCTTCAGTTGAAGAAATAATTTACACTGATACTGTACTAGTTGAGGATGTAACACCGATCGTTCATAACGAGCAAGAGGACACCAAAGATGTTGTAGAAAAACCTATTGAGAAGgaacttaaaatacaagcagaTCAACATAATAAAGAGATTACGACGGTGGAGCCCGATATACCAATCGTAAAGACACAAATTCCTGAAATAGAACATTTACATGATACAGATGTGGATGAACGTCCCACTGATAAAGTGATAGTTAAGTCGAAGAAAAGAACAATTCCAATGTCCACCCATGTTAAAATCCCCAAGGTTACAGATACACAAACGACGAAAAAAAAGCTTCTAGGTAAAGATAAAATAGGTGCAATGGTAACCAAAAAACAGAAAATGGCTAACGTCACATTACCGACTTTAAAAGAAGTGAAAAACGACGAAGCAAGTGATGAGGACGAGATAAGGTACATGCTTAACCCAGAAATGCAAGTAGATGAAACAGTCGAAGAGAAACTTTTTATAAAAGTGCGCGCTAAGAAGCGTAGCTCCCTGCAATTTGAGCGCCCAAGTTCTAATGATTTAACGACAAGAAGAATCTCCTTACAACATCCTCCTAAAATACCGCGACCAAAGGTGAAGCCGATTCCACGTAAATCCGTTGCAGCTACGAACACAGCCGTTAAGGTTTCGAGAAGGGTCTCAATACCAGCCGAGGCCAAGGCATCTGCTACAGATTCGGACGACAGTGACGTCAAATATTCATTTCCAGAATCTGTTAAGAAGGCAATGGAAAAGGAGGAGCAGAAAAAAGTTAAGCGGCAAACTATAGCCGAAAAGAGGAAATCGTTGACAAACATCGCGAAAAGAAAATCAATGGGAAAAGCGCCGAGCGCGAAACTCAAAGCCAATCCCTCGCCCGCAAAGCAGATTAAAAAACgtacgttGGGTGTCGAGCACCGCTGCGACTGCGGCCAGCTGTTCAGcagcgcggcgctgctggcgcggcacGCGACGCTCGCGCatacgccgccgcgccgccgccgccgatcGCCGCCGCCCGAGCCGCCCAAACCGCCCAACCCGCCCAAACACGCGAAACAACCCcagGTCCACCCCGGTCCAGCCAAGAAGTCGACCAAGGCCCAGCCAGAGCCGCCGAAGGCCGGCGTGACCACGAGGAAGTCCAGCGCGCCCTCGCCGAGGGCGGAGTCCCGGAGGCTGTGGAAGTGTGGCTTCCACAGCGGGGTCCCCCTGCCCGACAAGTTGGCCAAGGCTATATCCAAGACCAAGAAGTAA
- Protein Sequence
- MDRVNQLRGDVVASRESTLNASSLTGDAYATADEGSKYFSLSEVDSSTTESPPKGPDANDDSVSEAERIISNLSPIPKKGELDGFKIGQRIEAANILSGGVNIFDDNENSCDEDELVIDDAVQESDEKPAQMKLDDTEDTFEKGDQLGDNVVYTEAVCLSKDTGVMLLIDGKNVDAIAIGNGLYLYRNQGEEELAAIQILDNSKQHSDCKFLKVRENAEGNLEVYEEIEVEVQKEVPIKPGKTLKNASRVPEKIKDKVSEHESQRVTEKISQLKPKLTTTVNESNLVLNKDDTQVDPKTEVNFNGKMIKFSESRKSPLVGTFTPMTYHSTPNKEGIPLTKTMVDLQLHPNRHSENVKKTIEVHTDNCKQRILETPIKTTNHKESSECDVKNDKTEKSDVRKHSQLETARDDVLLQSTGSTEKDLHEGSKPAELKQTVNEMKDKHKIHENCTKTVDEKIEGTNTNDSKVTDVPKEETNALMDSKQESSTEITPNKLVDDIKDSINNVAVNSSHEDSSKTQYSTCSKPTDQLEKTIENSHNDVDVKVDIEKEQKNIPENRSVISPTIENFSEQQNITQNVIKPLEVLDSSATVGNNTFKDGNLSIHISDGKSCDAKIKTNLENETTIDTKPVKDESIKTLSNLSKVLETKNDTSVKKHEVPLNISRTLPKEENLKPISDLKQSSNESKVIKEVRANKSEIKQVPDLLEKVNPLPSSDLKAPNRNQASVESKKDLGKESKLPMPKPINNNIDEVPFGQWTDANRQEFLNKLKESKIPTNASNSKQLKQPNDLNRRDVLQKIANQRHSNLISAKVQELNALNKSRAKNDTPAFLNKVNVTQKEMNKDNKVSPSTHKVADTVPKVQIEMKIGEVKKVDKEVPQQVIPVCSSTTSLNSKKDPVHRKEINNQDLIDKTIEGIINRAVTAKLGQDDVKQNVEHADKALNPNSYPVSLDEIESKMNELHGIPFVERPPHELPQVVPENHENKTFAIADTPVSSKPSIVADKIPFTNIHEEKNDETANQAISRTNEESDEEIIEHEPITGDIELNLKNALAPPLKDKKLPQTSTTTKPNIDSKKEPIITEKEFDKFARRNSITYENRLTVNFDSKEHHNVIQTVVEKEVVPKKLSRNEIMLAESKAKSYKNLALRHNFPSKTPTTVKLTNDEDLCNRNYQSKVQIAYQSAMTAKKQQGSPITIIEDKPVKVVFMDTNQEVSPHQLNVQDKELSPPKKTVTEWDHFTHSNSESLDSDTIDAGYDSKSQDDTKFKSKHQRKQVLTPVEVPELELIEPRDLGIEASPKKKRKVEDSKTEKNAKTLVPKKTYLLNRNIIVDETAPKPKEVTDTVIALEDQPANAQDLFVKRADAISAIDNLVKAAELLETQSENKHVLPPNDQNSPNNQMTPVKRGRGRPRKYPLPQVDNKSPSPVKKPTPQKKPRLIDAKIAKYETDSEDDEVDSNGELVKENWTMGKINENIVCPICNKLFRSENVVFKHVKHCTGPSPNRSDSDKRSPRRMRHSQELDWKSEGSKSDSMDVDDDYEENKPTKKRKSKERKSIDDKPEVIIIEDTPPVKLQEVTTIKKRDKVKQELNRTTIKSKIPNRITSNLVCESCGKTFRQLSYLVNHRLQHKEAETKKIEKDQIHKPLFSCEICKKEFRKLHHLVQHRIIHNPNPMNSRSSIKSSLEQSDTKSIKDASKPNEDQSAGFRCEPCDKSFRKLHHLVEHRETHDEINKKNITVADITDSTKPNALHHCDVCKKTFKKLEHLIEHKEHHLDTCSEKSDDKSVKSSLSTKDIIHECPLCYMVFPNEHSLTKHNIICQRKKKQSAAKQAKQKTENNTDIIDDEATVIEADEDNASVEEIIYTDTVLVEDVTPIVHNEQEDTKDVVEKPIEKELKIQADQHNKEITTVEPDIPIVKTQIPEIEHLHDTDVDERPTDKVIVKSKKRTIPMSTHVKIPKVTDTQTTKKKLLGKDKIGAMVTKKQKMANVTLPTLKEVKNDEASDEDEIRYMLNPEMQVDETVEEKLFIKVRAKKRSSLQFERPSSNDLTTRRISLQHPPKIPRPKVKPIPRKSVAATNTAVKVSRRVSIPAEAKASATDSDDSDVKYSFPESVKKAMEKEEQKKVKRQTIAEKRKSLTNIAKRKSMGKAPSAKLKANPSPAKQIKKRTLGVEHRCDCGQLFSSAALLARHATLAHTPPRRRRRSPPPEPPKPPNPPKHAKQPQVHPGPAKKSTKAQPEPPKAGVTTRKSSAPSPRAESRRLWKCGFHSGVPLPDKLAKAISKTKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -