Cpal013453.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Carterocephalus palaemon
Gene Symbol
-
Assembly
GCA_944567795.1
Location
CALYMS010000188.1:1007319-1020689[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 43 0.0042 0.24 12.0 2.0 2 22 45 65 45 65 0.92
2 43 0.0042 0.24 12.0 2.0 2 22 73 93 73 93 0.92
3 43 0.0042 0.24 12.0 2.0 2 22 101 121 101 121 0.92
4 43 0.0042 0.24 12.0 2.0 2 22 129 149 129 149 0.92
5 43 0.0042 0.24 12.0 2.0 2 22 157 177 157 177 0.92
6 43 0.0091 0.53 11.0 2.7 2 21 185 204 185 205 0.93
7 43 0.00026 0.015 15.8 0.2 2 23 221 242 220 242 0.94
8 43 0.00076 0.044 14.4 0.3 1 23 247 269 247 269 0.98
9 43 0.044 2.6 8.8 0.3 1 17 278 294 278 295 0.87
10 43 0.044 2.6 8.8 0.3 1 17 315 331 315 332 0.87
11 43 0.044 2.6 8.8 0.3 1 17 352 368 352 369 0.87
12 43 0.044 2.6 8.8 0.3 1 17 389 405 389 406 0.87
13 43 0.044 2.6 8.8 0.3 1 17 426 442 426 443 0.87
14 43 0.044 2.6 8.8 0.3 1 17 463 479 463 480 0.87
15 43 0.044 2.6 8.8 0.3 1 17 500 516 500 517 0.87
16 43 0.24 14 6.5 0.1 1 13 537 549 537 551 0.86
17 43 0.24 14 6.5 0.1 1 13 589 601 589 603 0.86
18 43 0.24 14 6.5 0.1 1 13 641 653 641 655 0.86
19 43 0.24 14 6.5 0.1 1 13 693 705 693 707 0.86
20 43 0.24 14 6.5 0.1 1 13 745 757 745 759 0.86
21 43 0.24 14 6.5 0.1 1 13 797 809 797 811 0.86
22 43 0.24 14 6.5 0.1 1 13 849 861 849 863 0.86
23 43 0.24 14 6.5 0.1 1 13 901 913 901 915 0.86
24 43 0.24 14 6.5 0.1 1 13 953 965 953 967 0.86
25 43 0.24 14 6.5 0.1 1 13 1005 1017 1005 1019 0.86
26 43 0.24 14 6.5 0.1 1 13 1057 1069 1057 1071 0.86
27 43 0.24 14 6.5 0.1 1 13 1109 1121 1109 1123 0.86
28 43 0.24 14 6.5 0.1 1 13 1161 1173 1161 1175 0.86
29 43 0.24 14 6.5 0.1 1 13 1213 1225 1213 1227 0.86
30 43 0.24 14 6.5 0.1 1 13 1265 1277 1265 1279 0.86
31 43 0.24 14 6.5 0.1 1 13 1317 1329 1317 1331 0.86
32 43 0.24 14 6.5 0.1 1 13 1369 1381 1369 1383 0.86
33 43 0.24 14 6.5 0.1 1 13 1421 1433 1421 1435 0.86
34 43 0.24 14 6.5 0.1 1 13 1473 1485 1473 1487 0.86
35 43 0.24 14 6.5 0.1 1 13 1525 1537 1525 1539 0.86
36 43 0.24 14 6.5 0.1 1 13 1577 1589 1577 1591 0.86
37 43 0.24 14 6.5 0.1 1 13 1629 1641 1629 1643 0.86
38 43 0.24 14 6.5 0.1 1 13 1681 1693 1681 1695 0.86
39 43 0.0014 0.084 13.5 3.6 1 21 1733 1753 1733 1758 0.93
40 43 0.0047 0.27 11.9 3.1 1 23 1766 1789 1766 1789 0.91
41 43 0.016 0.96 10.2 0.2 1 23 1795 1818 1795 1818 0.95
42 43 0.86 51 4.7 0.7 3 19 1832 1848 1830 1853 0.89
43 43 0.076 4.5 8.1 0.3 1 23 1862 1885 1862 1885 0.96

Sequence Information

Coding Sequence
ATGGCTATCATAGCTAATTCTGTGTTATTGAAGAGTGCCATCAAAACAATCGACGTCAACGCTAGTCTGAAGGGAACGTCCACGAAGTCCAAGCTGGTGTACCACAGGGTGCAGTGCAGCCAGGAACGGCCGCAGTGCGACTGCTGCGGGAAGGTGTTCGCCAACAAGATGACGCTGAGGCACCATCTCCGGGTGCAGTGCAGCCAGGAGCGGCCGCAGTGCGACTGCTGCGGGAAGGTGTTCGCCAACAAGATGACGCTGAGGCACCATCTCCGGGTGCAGTGCAGCCAGGAGCGGCCGCAGTGCGACTGCTGCGGGAAGGTGTTCGCCAACAAGATGACGCTGAGGCACCATCTCCGGGTGCAGTGCAGCCAGGAGCGGCCGCAGTGCGACTGCTGCGGGAAGGTGTTCGCCAACAAGATGACGCTGAGGCACCATCTCCGGGTGCAGTGCAGCCAGGAGCGGCCGCAGTGCGACTGCTGCGGGAAGGTGTTCGCCAACAAGATGACGCTGAGGCACCATCTCCGGGTGCAGTGCAGCCAGGAGCGGCCGCAGTGCGACTGCTGCGGGAAGGTGTTCGCCAACAAGATGACGCTGAGGCACCATCTCCGacagacacagaaGCCAGCTAACCAGCCACCGAAGGCGAAACAGTTCATTCCCTGCAAGGGCTGCGATAAGGTGTTCTACTCTAGGAAGAGCTATAAGGCTCATGTGGTGATCCACAACGGCGTGAAGTACCCGTGCCCGGTGTGCGGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGcaaGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGcaaGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGcaaGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGcaaGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGcaaGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGcaaGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGcaaGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACACaccccaccgctgggcacgggtctcccccacagcaaGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcatgGGTCCCCCCCACAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACCACCGCGAGCGTGCGGCGGGCGCCCAGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcaCCCAGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCAGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGGTGGGCCGGACacatcccaccgctgggcacgggtcccccccacAGCAAGCTGTTCCAGTGGAAGCGCGACCTGGCGCGGCACACGCGCAACcaccgcgagcgcgcggcgggcgcccaGCACGCGTGCCGCGAGTGCGGCAAGACGTTCGCCAGCAGAGACTGCTACAACAATCACATTAGGCTTAGCAAGCGGCACGCCGGCGAAAGCTCCTACATCCACGCGTGCCACTACTGCGGCAAGAAGTTCCCCACCAAATGGTGCATGGTGGACCACATAGACTGGGACCATCTCAAGCGGATCAAGTACCAGTGCAGTGTCTGTTTGaagGCCTTCAAGACGGCGAAGATAATGGTCGCCCACATGAACAACATACACGACGGGAAGAACAAGAAGGAACCGGACGGACAGCATCTGTGCGACGTATGCGGGAAGTATTATAAGACGGTGAAGCGGCTCAAGGGCCACGTGTGGTCGATGCACACGAGCCGCGAGAAGGCCGCCAGCTtccgctgcccgctgtgcccgGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAGCGGCAAGCGGAAGCAACCCAGAGGGCCCCCCGCGAAGAAACCCGAGCCCTACCCGGACATCGAACTGGCGAACCGCATGCAGTACTTCCAACAGAACTTGGTGCAGGGCATGGGCCAGCCTGCCCCATTGAATATAGTGCAGAATCTGTAA
Protein Sequence
MAIIANSVLLKSAIKTIDVNASLKGTSTKSKLVYHRVQCSQERPQCDCCGKVFANKMTLRHHLRVQCSQERPQCDCCGKVFANKMTLRHHLRVQCSQERPQCDCCGKVFANKMTLRHHLRVQCSQERPQCDCCGKVFANKMTLRHHLRVQCSQERPQCDCCGKVFANKMTLRHHLRVQCSQERPQCDCCGKVFANKMTLRHHLRQTQKPANQPPKAKQFIPCKGCDKVFYSRKSYKAHVVIHNGVKYPCPVCGKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHTPPLGTGLPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGMGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGTQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLARHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRNLAQHTRNHRERAAGAQHACRECGKTFASRWAGHIPPLGTGPPHSKLFQWKRDLARHTRNHRERAAGAQHACRECGKTFASRDCYNNHIRLSKRHAGESSYIHACHYCGKKFPTKWCMVDHIDWDHLKRIKYQCSVCLKAFKTAKIMVAHMNNIHDGKNKKEPDGQHLCDVCGKYYKTVKRLKGHVWSMHTSREKAASFRCPLCPATFTWQTSIYKHVKMMHDSGKRKQPRGPPAKKPEPYPDIELANRMQYFQQNLVQGMGQPAPLNIVQNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-