Cpal015361.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000252.1:623985-634052[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.31 18 6.2 0.0 2 23 204 225 203 225 0.95 2 11 0.00046 0.027 15.1 3.5 1 23 231 254 231 254 0.96 3 11 0.00042 0.025 15.2 4.3 1 23 1018 1040 1018 1040 0.98 4 11 0.0022 0.13 12.9 1.1 3 23 1047 1068 1045 1068 0.96 5 11 0.0013 0.078 13.6 2.2 2 23 1077 1098 1076 1098 0.96 6 11 0.00021 0.012 16.1 4.7 2 23 1102 1123 1101 1123 0.97 7 11 0.13 7.5 7.4 1.5 2 23 1137 1159 1136 1159 0.96 8 11 0.00056 0.033 14.8 3.9 1 23 1165 1187 1165 1187 0.98 9 11 0.14 8.2 7.2 3.1 2 23 1194 1215 1194 1215 0.97 10 11 0.034 2 9.2 0.8 1 23 1221 1244 1221 1244 0.96 11 11 0.0031 0.18 12.5 1.2 1 23 1248 1271 1248 1271 0.95
Sequence Information
- Coding Sequence
- ATGGATGAAGTTTATAGGAATGTTAGGGCTGTAAAACCGTACAGAAATGCGCCGGATGATTTTAGAAATTCAACTAACAAGTCGCGACCAGAAGTCGAAGATATCCAGCATCTGACTACGAAAAATGCAGTGAAATTTCTTCTGGAAGGAACATTGAAATACAAAGTTTGCAGATATTGCTTGACAGTATCATCCCAGTTGTCGCAGTTAGACGAAATATTTGAGGTGGCACGTAAAGGGGCTATTTATAAGGTTACCCTGAGGGATATGATTGCTAGCGTTCATCCTTTCAAGGTTGCTGATGACCCCAATTTCCCCGACAAGGTGTGTGATCAATGCGTGGAGAGTGCTATAAGCTCTTATATGTTTGCTCAGCAGTGCGAGAGAGCAGAAAGAGCCTTGCGAAATTGTTTTGATGACATCTATACAAAATTTGAAAGGTTAGACCCTCTTGAGAGGCCTAAAACACGGGGCAGGCCTAAACTCAACTCGAATTATAATGTTTTGTATGCAGAACATGAAAATGTTGTGGACTATGCTGATCCTATTATAAACATTATCAATGTAGGATCAGTGAACTTGGAGAATGAGAAAGAGATTAGCGCATTGGAGTGCCCTAAGTGTTGGCAGGTTCTCCCAGATATCGAAGCTTTGTTGAACCACGAAAGCATGCATCCGAAAAGTATGTGGTTCAGCTGCCGCCTTTGTGGACAGTCGTTTGTCAAACGTCATCTATATAAAAGGCATATTAAGAATGTACACGAGTATGAACGTGTTGTTACAGTACCCGGTACTGAGAGTTTTAAATGCAATCAATGCTTGGCTGTGAGTTCCAGTTTTGGCGAACATTTGCAGCATTTGGAGAAACATAAGTTTAAAACAACATTTGAGCATCTGATTGACAGAAGTATGAACCGTTTGTGCACGGTTTGCCTTGAAAAAGGAACACAAATGACCCATATAGATGAGACTATACACATGTATGGTGGATACCCTGGATTGAATAATGAAAAgtcaatacataatattatcacaGCAACCTTTCCTGAGAGAAAATCTTACAAATATCAAGAATTGCTCATACCAACCAGAGCTAGTATAGTGAAAATCACAAGAAGAATGGACTCAAATCAGATGGAAAAGCCAATGACAATATACAAGGACAAGGAATTATTTCAATTTCGTGCTCCCATAATACTTTCGGCACAGCAAAAGGACTTTGAGATACTATATCACTTTTCTATCCCTGAACCAATCAATATTCATGATATGCTTACATTTAATGTAGGTCAGAATATTCTTTCTAAAACTATAATATGTGATGAtaataaagaagaaaataaaGTTACTATAAATGAAACAACTGTGGCAAACAAAATACTTCATGATACTATTACTATACAAGAAAGTTTGTCACCAAATTATAATTCAAGTGGTAATACAAAGTGCAATGATGACCACGCAAATGGTGACCCAGAAATACTAGAAATATGTAAAGTATGCTGGATTTTCAACAAACCTACTTGTGAGAATTGTCTTGGTACTAAACAGTACTGCACTGATAACAACAGCATTGTAGATACGAAGACCAAAGTTGAAAGAGTAAATAAACAGGATAAGTGCCAATATTGCTGGCTTTTTAAAGCTGTTGGTGAGTGTAATTACTGCAAGAATATTCTTACGAAGCAAGATAATACCATGTCTATTGAAATAATTAGCTGTAGCACTGAAGTTAATCTTCAGAGTGTCCAACAAATATTTAACTCTGAAGGTGTTGATGCGAAATATAATGTATCTGAAAGTAATGTAAAGGGTGCAAAGGCCCCGGAATCTAAAGTCAATGAGAGAAAGAGAAAATCCACTCAAGAACCTTTTATAAAAGGAAGACAAAAATGGAAATGTCGTATTTGCTCAACAAACAACGGTAAGGATAGACAGACTTGTTTTTGTTGCGATTTTGACATGGAAAAATTGGACAgtaaagtgaaatttaattttggaTTATGCTCACCGCGGCTTCAACTTCAGATTAAAGCATCAACAGTGAAAGAAGTAATAAATACAGTGGAGCAAGCTAAACTAATTGAATTAAATGAAACTCAACTCAGTGCTAAATCAACGGGTGACAATGTAAAATTCATCAATTACAATGGaagtaattttaatacaaaatcaACAGTTGATGAAATCAAGTTTGATGACTTCAGTAAAAGTGAAAATCTAAAACCTGCTGTTGCAGCTAAATTTAACAATAGTGAAAGTCATGTTAGAGCATGTTCTCTTGCTGAAGTATCGGGATATCAAAAAATTCCAGCAGATGACCCAATGGACATCGAAATAATGACAAGTGAATCAAAATATATTGGAATTGAAAACAATGACAAGATTAATCCATTTATGAAAGACGAATCAATGGATGTGGTGTATGAAGAAGAAAGAGCACCATTTATTCAACACTACAATTTGCCCACGGCGTTGCCTTTTAACGCCACAATGATTAACAATAACACAGGAACTCACATATGTGACAGATGTTTAGAGCATTCGATCACCTCATATgtgtttgttagtaaaatacgACATGTAAGAACCAGATTGTTCGCTTGCGTTAGTAATATGTTAGACCAGTTGAATGAATTAAGTGAATCAGATAAGAATTTAATGGTAGAAATTTCACAATACTCAATACTACCACAGATTGAAGACGAATTGAAAGTCATAGAATTAGACTCTGATAACATAGATGAATCTAAGTATGAAGTTGATGTGTTAGAAGACGAATTTAGAGTGGAATCTAGCTCTGGTGAAGATGATGTTAAATCAGAACATTCTGTGTTTAGTGACAATGGAATGGATACCGACAAAGACCAAGATACGAGAGGATTCTTGGAGAATCCAGCTAAAAAAGCTACCAAGacatatgtaaataaaaagctGTTGAATGGATATAAAACGGCGGCAGCAGAGAATGATTGGCTGAAAGACGTGTGCGAGTTTCTAACGTTCAAAAAGAAGGTGAAACGAAACCGACGACGGCCTTATAAATGCAAGTTCACATGTCCATATTGCACTAAACATTTCATAACGGATTACTTCCTCAAGAGACACGTATTGAAACACAGACTATCGAAAGTCAATTGCAAAACATGCGGACTGCAGTTCAAATCAAAGTTCTATTTATACGAACACGTGAAGATGAATCATTTGATGAAAGAGACATGTTATAGTTCGTGTTCGGTGTGTGGGAGAACGTTTAGTAATACGAAGAAAATGAAAATGCACGAGAAAAGCCACAGGATAAAGGAATGCTTGCTGTGTGACAAATTCTTTACGTCACAGAAGCACTATAATACTCATATGCAAAGACACGCTATCAAACTGAACTTGGCAAAGCGCTGGAGAGTTCAAACTTGTAGCTTCTGCGAGAAGGAATGTGCAAATGAAAATGAACTCTCGCTCCATGTGAATAAGTCACATCTTCAAATCAAACCTTATAGCTGTGACATGTGCGATAGACTGTTTTACACGGAATACCATTTGAAGAACCACAAGAAAATCCATAATCTTTACTCAAACGAGTCGTGTGAGTTTTGCGATGCGAAGTTTAAGTGTAGAAAGAATTTAGTTATCCATGTAAGGAAACATTTGGGTTGTAAACCCCATGTTTGCCAAGTGTGCAGGCAAGGGTTTTATGGGGAAAGCAAGATGAAATGGCACATGGAGGTCTACCATGGTGGTAGATTCTGCTGTAGGCTTTGCAAAATAGTTACGGCTACCAAGAGTGAACTGCGGACTCATATAAGTGTTGAACATAGTGCTATGTAG
- Protein Sequence
- MDEVYRNVRAVKPYRNAPDDFRNSTNKSRPEVEDIQHLTTKNAVKFLLEGTLKYKVCRYCLTVSSQLSQLDEIFEVARKGAIYKVTLRDMIASVHPFKVADDPNFPDKVCDQCVESAISSYMFAQQCERAERALRNCFDDIYTKFERLDPLERPKTRGRPKLNSNYNVLYAEHENVVDYADPIINIINVGSVNLENEKEISALECPKCWQVLPDIEALLNHESMHPKSMWFSCRLCGQSFVKRHLYKRHIKNVHEYERVVTVPGTESFKCNQCLAVSSSFGEHLQHLEKHKFKTTFEHLIDRSMNRLCTVCLEKGTQMTHIDETIHMYGGYPGLNNEKSIHNIITATFPERKSYKYQELLIPTRASIVKITRRMDSNQMEKPMTIYKDKELFQFRAPIILSAQQKDFEILYHFSIPEPINIHDMLTFNVGQNILSKTIICDDNKEENKVTINETTVANKILHDTITIQESLSPNYNSSGNTKCNDDHANGDPEILEICKVCWIFNKPTCENCLGTKQYCTDNNSIVDTKTKVERVNKQDKCQYCWLFKAVGECNYCKNILTKQDNTMSIEIISCSTEVNLQSVQQIFNSEGVDAKYNVSESNVKGAKAPESKVNERKRKSTQEPFIKGRQKWKCRICSTNNGKDRQTCFCCDFDMEKLDSKVKFNFGLCSPRLQLQIKASTVKEVINTVEQAKLIELNETQLSAKSTGDNVKFINYNGSNFNTKSTVDEIKFDDFSKSENLKPAVAAKFNNSESHVRACSLAEVSGYQKIPADDPMDIEIMTSESKYIGIENNDKINPFMKDESMDVVYEEERAPFIQHYNLPTALPFNATMINNNTGTHICDRCLEHSITSYVFVSKIRHVRTRLFACVSNMLDQLNELSESDKNLMVEISQYSILPQIEDELKVIELDSDNIDESKYEVDVLEDEFRVESSSGEDDVKSEHSVFSDNGMDTDKDQDTRGFLENPAKKATKTYVNKKLLNGYKTAAAENDWLKDVCEFLTFKKKVKRNRRRPYKCKFTCPYCTKHFITDYFLKRHVLKHRLSKVNCKTCGLQFKSKFYLYEHVKMNHLMKETCYSSCSVCGRTFSNTKKMKMHEKSHRIKECLLCDKFFTSQKHYNTHMQRHAIKLNLAKRWRVQTCSFCEKECANENELSLHVNKSHLQIKPYSCDMCDRLFYTEYHLKNHKKIHNLYSNESCEFCDAKFKCRKNLVIHVRKHLGCKPHVCQVCRQGFYGESKMKWHMEVYHGGRFCCRLCKIVTATKSELRTHISVEHSAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -