Cpal007870.2
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000100.1:746960-767507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 2.6 1.5e+02 3.2 1.3 1 23 381 403 381 403 0.96 2 29 2.6 1.5e+02 3.2 1.3 1 23 434 456 434 456 0.96 3 29 2.6 1.5e+02 3.2 1.3 1 23 487 509 487 509 0.96 4 29 2.6 1.5e+02 3.2 1.3 1 23 530 552 530 552 0.96 5 29 2.6 1.5e+02 3.2 1.3 1 23 583 605 583 605 0.96 6 29 0.12 7.1 7.4 0.8 1 23 612 635 612 635 0.93 7 29 0.12 7.1 7.4 0.8 1 23 651 674 651 674 0.93 8 29 0.12 7.1 7.4 0.8 1 23 690 713 690 713 0.93 9 29 0.68 40 5.1 0.4 1 23 717 739 717 739 0.93 10 29 0.059 3.5 8.4 0.9 1 23 744 767 744 767 0.97 11 29 0.088 5.1 7.9 1.8 2 23 772 794 771 794 0.93 12 29 0.088 5.1 7.9 1.8 2 23 837 859 836 859 0.93 13 29 0.088 5.1 7.9 1.8 2 23 902 924 901 924 0.93 14 29 0.088 5.1 7.9 1.8 2 23 967 989 966 989 0.93 15 29 0.088 5.1 7.9 1.8 2 23 1032 1054 1031 1054 0.93 16 29 0.088 5.1 7.9 1.8 2 23 1097 1119 1096 1119 0.93 17 29 0.088 5.1 7.9 1.8 2 23 1162 1184 1161 1184 0.93 18 29 0.088 5.1 7.9 1.8 2 23 1227 1249 1226 1249 0.93 19 29 0.088 5.1 7.9 1.8 2 23 1292 1314 1291 1314 0.93 20 29 0.088 5.1 7.9 1.8 2 23 1357 1379 1356 1379 0.93 21 29 0.088 5.1 7.9 1.8 2 23 1422 1444 1421 1444 0.93 22 29 0.088 5.1 7.9 1.8 2 23 1487 1509 1486 1509 0.93 23 29 0.088 5.1 7.9 1.8 2 23 1552 1574 1551 1574 0.93 24 29 2.1 1.2e+02 3.5 0.6 2 21 1587 1606 1587 1611 0.88 25 29 0.42 24 5.7 0.2 2 23 1661 1683 1660 1683 0.96 26 29 0.026 1.5 9.5 0.5 2 20 1699 1717 1698 1720 0.92 27 29 1.5e-05 0.00086 19.7 2.5 1 23 1726 1748 1726 1748 0.99 28 29 0.00065 0.038 14.6 2.8 1 23 1755 1777 1755 1777 0.98 29 29 7.8e-05 0.0046 17.5 0.6 1 23 1783 1806 1783 1806 0.93
Sequence Information
- Coding Sequence
- ATGCGGTGTAGTGTACAAAACTGCACGAATGATACCAAGAAAACGACAAAAAGTCATGGAATCACATTTCACATGTTTCCAAAAGAGCAGAGCCTGCGTGCAGCGTGGGTGCAGGCGCTGGGCGTCTCGCACTGGGAGCCCAGGGACCGGAGCACCATCTGCTCGGAGCATTTCCTCAACAGTGACTTCTACGTCACCAAGAACGGTCTTAGGAAGATCAAGAATGGTGCTGTGCCTGTTGTAGTACATGAATCAGTGGATGACTTGGATGCTCCAGCTGCTCTCAGGGTGTGCCGTGTCTGCCTGGTGATGGACACTAAGATGTACCATATAAATGAATACAAACTAAACATGCTGTATGAACAAATCGTCGGAATACCTCCAGCAGATGAGGACAAGCTGCCGCAGAAGGTGTGCTGGGAGTGCGCGCACAGACTCAACTCTGCGTACAATCTGCGGGCGCGCGCGTTGCGCTCGCAGACACTGCTGTACGAACTGGTGGATCCGGATAGATATGTTACTATAAGGGACGTGAAATCTATAAACCGAACGCACCATAAACTCAAGTCGAATCTTGTGCACAAGCACTATGAATGTGACGATTTCGATGACTATGTGCAAGGTTCTAACAACCAGCCCACTCCTGGACTAATCCTGGTCAAAGAAGAGACCAACACAGAAACAGTTAACGGTGAAACGATAGAAGATGAAGACAAAGATGTGGCAGAAGACATGGAGGACGCGAAAGATGAGGTGAAGGAAGAAGTGGGAAACGAAGTTAAAAATGAAGATAACGAAGCGTCCAATGAGATATTCTTTGAAGAATATACTGACAATTTTGATGATTCTGATGACATGGCGTTGAGCGAGGTATACGTAGATGTtgcgaataaaaatttaagtaagaagaaaaaaattaaagtggGGAAGAAAGTGAAGGAGAAAAAAGTTCCGAGGAAGAGAGATGTGGATGAGAGTCCTACAAGCACGGTGGATAAATACAAAACGTCTGACGTGAAACGTCGACGCACCGTGGACAACATCGACGAGTCCCTGTTCACCGTCACGCGGCTCACGTACGAGCAGCAAGCCGACGAGgtgcagcggcggcggcagctGCCCTCGTACGCCGCCGCGCCCTTCCGCTGCGACGCGTGCTTCCGCGGCTTCCAGCGGCGCGACCGGTACGACGCGCACCGGGTGCGGCATAGCGAGGTGCGTGTCACATCGACCAGTGTCTGTCCGTCAGGCGACGAGgtgcagcggcggcggcagctGCCCTCGTACGCCGCCGCGCCCTTCCGCTGCGACGCGTGCTTCCGCGGCTTCCAGCGGCGCGACCGGTACGACGCGCACCGGGTGCGGCATAGCGAGGTGCGTGTCACATCGACCAGTGTCTGTCCGTCAGGCGACGAGgtgcagcggcggcggcagctGCCCTCGTACGCAGCCGCGCCCTTCCGCTGCGACGCGTGCTTCCGCGGCTTCCAGCGGCGCGACCGGTACGACGCGCACCGGGTGCGGCATAGCGAGCAGGCCGACGAGgtgcagcggcggcggcagctGCCCTCGTACGCCGCCGCGCCCTTCCGCTGCGACGCGTGCTTCCGCGGCTTCCAGCGGCGCGACCGGTACGACGCGCACCGGGTGCGGCATAGCGAGGTGCGTGTCACATCGACGAGTGTCTGTCCGTCAGGCGACGAGgtgcagcggcggcggcagctGCCCTCGTACGCCGCCGCGCCCTTCCGCTGCGACGCGTGCTTCCGCGGCTTCCAGCGGCGCGACCGGTACGACGCGCACCGGGTGCGGCATAGCGAGCAAAGCGGCGCGTACGAGTGCTTCATCTGCCGCACGCGCATGAagacggcgcgcgcgctgcgcaagCACCTCAcggcgcagcacacgctcgagtaCACCTGCAAGGGGTGCACCTTCCAAAGCGGCGCGTACGAGTGCTTCATCTGCCGCACGCGCATGAagacggcgcgcgcgctgcgcaagCACCTCAcggcgcagcacacgctcgagtaCACCTGCAAGGGGTGCACTTTCCAAAGCGGCGCGTACGAGTGCTTCATCTGCCGCACGCGCATGAagacggcgcgcgcgctgcgcaagCACCTCAcggcgcagcacacgctcgagtaCACCTGCAAGGGGTGCACTTTCGTCACCAGGAACAAagGAGTCGCCAGGGAACACGAAAAATGGCACGCCGGTGCCAAATACCAGTGTCCACACTGCCCCAGCGAGTTTGACAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACGCGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACGCGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACGCGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACACGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACACGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACACGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACCACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACACGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACACGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACCACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACACGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACACGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACACGCCCGCGGTGAGCGCTGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACACGCCCGCGGTGAGCGATGGCCGTGGTTGTGGTACCATATTGTGGTACCATATTGTCCCCAGCAAGCTGACGACGTACCTGGGCCACGTGCGCATCAAGCACGTGTCGGACTGcgtgtgcgagctgtgcggctACACGTTCGTCAGCCGCAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCGTCGCGGACACGCCCGCGATACTGGAAGGCCCGTACTGCTCCGTGTGCGACGTGCGGTTCGTGTCCCAGGAGGCACACGACCGGCACCTGCGGCTCTCGTCCAAGCACAGCAGCGACGACGACCCGAATCGAATCCGCAACGACTCCCAGAGCATGGGCACGGAGAGCAGCGGGCGCGTGGTGCGGCACATCGAGCGGCGGCCCGTCGTGCACGCGCGCCCGCCCGGCCTGGCGCGCTCGCACGCCGGGCCCGTCTCGTGCGAGCAGTGTGGCCTCCAACTGCGCGACCTGCGCCTCTACGCGCAGCACTTCAGGCGCGCGCACCCCGACAAGAATCGAACCAAGTACCCCGCGATGAAGACGCCGTGCATGTGCGAGCAGTGCGGCCGGATCTTCCAGAGCATGGCGCTACTGAAGGACCACATGTGGGTCCATACTGGGGAGAAGCGGTTCAAGTGCGAGCGCTGCGACAAGAGCTTCACTCAGAAGACGAACCTGGTGTTCCACATGCGCGTGCACAGCAGCGAGCGGCCCACCTACGAGTGCCCGCTGTGCGGCAAGCACTTCGCGTTCTTCAACAACCGCCGCCGGCACATGTTCATCCACACGGGCCTGAAGCCGTACAAGTGCGAGACGTGCGGCAAGAGCTTCACTACGGcgggcgagcagcgcgcgcacgtggAGCACGTGCACCTCAAGAAGCCGTGGCcgaagcgcgcgcgcgcgcagcgcgcCCACGACTGGCACAAGTGTCCCGACGCGCAGGAGGACTGA
- Protein Sequence
- MRCSVQNCTNDTKKTTKSHGITFHMFPKEQSLRAAWVQALGVSHWEPRDRSTICSEHFLNSDFYVTKNGLRKIKNGAVPVVVHESVDDLDAPAALRVCRVCLVMDTKMYHINEYKLNMLYEQIVGIPPADEDKLPQKVCWECAHRLNSAYNLRARALRSQTLLYELVDPDRYVTIRDVKSINRTHHKLKSNLVHKHYECDDFDDYVQGSNNQPTPGLILVKEETNTETVNGETIEDEDKDVAEDMEDAKDEVKEEVGNEVKNEDNEASNEIFFEEYTDNFDDSDDMALSEVYVDVANKNLSKKKKIKVGKKVKEKKVPRKRDVDESPTSTVDKYKTSDVKRRRTVDNIDESLFTVTRLTYEQQADEVQRRRQLPSYAAAPFRCDACFRGFQRRDRYDAHRVRHSEVRVTSTSVCPSGDEVQRRRQLPSYAAAPFRCDACFRGFQRRDRYDAHRVRHSEVRVTSTSVCPSGDEVQRRRQLPSYAAAPFRCDACFRGFQRRDRYDAHRVRHSEQADEVQRRRQLPSYAAAPFRCDACFRGFQRRDRYDAHRVRHSEVRVTSTSVCPSGDEVQRRRQLPSYAAAPFRCDACFRGFQRRDRYDAHRVRHSEQSGAYECFICRTRMKTARALRKHLTAQHTLEYTCKGCTFQSGAYECFICRTRMKTARALRKHLTAQHTLEYTCKGCTFQSGAYECFICRTRMKTARALRKHLTAQHTLEYTCKGCTFVTRNKGVAREHEKWHAGAKYQCPHCPSEFDKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADAPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADAPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADAPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADTPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADTPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADTPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADTPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADTPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADTPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADTPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADTPAVSAGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADTPAVSDGRGCGTILWYHIVPSKLTTYLGHVRIKHVSDCVCELCGYTFVSRKGIDVHKKKKHRVADTPAILEGPYCSVCDVRFVSQEAHDRHLRLSSKHSSDDDPNRIRNDSQSMGTESSGRVVRHIERRPVVHARPPGLARSHAGPVSCEQCGLQLRDLRLYAQHFRRAHPDKNRTKYPAMKTPCMCEQCGRIFQSMALLKDHMWVHTGEKRFKCERCDKSFTQKTNLVFHMRVHSSERPTYECPLCGKHFAFFNNRRRHMFIHTGLKPYKCETCGKSFTTAGEQRAHVEHVHLKKPWPKRARAQRAHDWHKCPDAQED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00277417;
- 90% Identity
- iTF_00277417;
- 80% Identity
- iTF_00277417;