Cpal007859.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000100.1:549211-575801[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.033 1.9 9.2 0.4 1 23 741 763 741 763 0.98 2 13 0.065 3.8 8.3 2.3 1 23 770 793 770 793 0.95 3 13 0.0013 0.074 13.7 2.9 1 23 824 847 824 847 0.97 4 13 0.079 4.6 8.0 1.5 3 23 853 874 851 874 0.93 5 13 0.02 1.2 9.9 1.4 2 23 899 921 898 921 0.94 6 13 0.02 1.2 9.9 1.4 2 23 946 968 945 968 0.94 7 13 0.02 1.2 9.9 1.4 2 23 993 1015 992 1015 0.94 8 13 0.0046 0.27 11.9 1.3 1 23 1039 1062 1039 1062 0.94 9 13 0.81 47 4.8 0.3 2 23 1093 1115 1092 1115 0.96 10 13 5.5e-05 0.0032 18.0 2.8 2 23 1131 1152 1130 1152 0.96 11 13 0.0042 0.25 12.0 1.6 1 23 1158 1180 1158 1180 0.97 12 13 1.2e-05 0.00068 20.1 0.6 1 23 1187 1209 1187 1209 0.95 13 13 0.12 6.9 7.5 3.9 1 23 1215 1238 1215 1238 0.90
Sequence Information
- Coding Sequence
- ATGCGCTGCTACGTAGCTACTTGCCGCTACAACTCTAACGATGCGCCCTGCGGCGTCACCTTCCATCAGTTTCCCAAAGAGCCATCTCTCCGTGATTCCTGGCTGCAGTCGCTGGGCATGGAAGACTGGGTGCCCTCGGAGACCAGTGTCGTCTGCACAGACCACTTCGAGAAGAGTGACCTAAATGTGGACCAGAGCGAAGAGAGGCTGCGGGCAGGCGCTCTACCCAGTGTCACTGTACAGGTGTGCAGGATGTGCCTGGCCACTGGTGGCCGGCTGCTGCCGCTGCGGGAGCGCGTGGGGCTGCAGCAGGCGTACCACACTCTCACCGGCCTGGCGCGGGCCTGGACTGCAGTCAGGTCGCGCTCCCGCTACAGCTCGTGTGTCGGTCGTTCCCAGCCGGAGCGCGGGGCCGGCCTCCCCCAGCAGCTGTGCGCCACGtgcgcgcgcctgctgctgtcgcaccggcggctgcgcgcgcgggcTCTGCGGGCGCACGCCGCGCTCTCGTCGCTCGCCCGCGACCGACACCAGATAACATTCAAAGCGCTGCAGTCAATCAAAGGAAATGTCAGTCATTGCAGTTCAAATTTACAGATAAAACTATATAAACCAGATCATTACGACTTAGAAATTAAACACGTAGAAGACGAAAATTCATGCACTGATAGAGCCAATCATGATGAAGATAGTATTACGCAAAAAAATAACGTGCCCGTTACtgttaaagaagaaaaagaatctAATTCGATTTTAATTTGTCAAACTAGCTTTGAAGATTCCAAGATTAAGCTAGAAAATGATTATGTACTTTACGCTGAAGAATCAGATGAAGAAATGTTAGAAGAACTGTACGAATCTACCCCTGAACACGCTGATAATAGGGTAGAATATAACTGCGCACCTAGTCTTGAAGACTTTGATATTGAGGCGGAAAATTATTGCCTTGAAGACTCTAGAGTTAAGGAGGAGCTAAAGTTTGAATCCGATGGTGTTGAGGAAGAAATTTATGCACCTTCCCAGGAAGACTGTGATATTAATGTTTTTGAGACAGAATTGGTAGTAACAAGAATGGATATTCATGGTGCAATCGCAACAGAAGTGGAGAATATCATCAACAAAATGAAACTGATTGATGAAGATGCGAGCTCCTCACGCGACGCGCGCAGTAATGATCCGGCTATCATGGATAGTGATGTTGTGAAGGATATGGTCGATGATAGCGAAACAACTTTAGGTGACGGTAACTGCCCGCGAAACAGCGAGCCTGCACCGGCGGATCGGATCGCCTTTATTGGCAAATACTATATAACTATCGCGGATCAAGTGGTGAAGGGGAAGGAACACGCAAGAGGAAGGAGTCCGCACGAGTACAGACGACCCAAGATCCCCACGCAAGGTTTGGTACCGCAGACGCCATTGATATGCCGGGTGTGTCTGGCAACCAATAATGAAACATATGATATGAATGAGGGTGATTGGAGGACTCACTATGAAGAAATCACTGAGTTATATATTGGAGACGATGACAAGTTCCCTCGCGCGCTGTGCTGGGAGTGCGCGCACCGCCTGGCCGCGTGCCACCGGTTCAGGGCGCGCGCCAGGCTGGCCCACTGCCTGTTGGAAGGCTTACTAAAGGCCGATGGATACATTACAGAGACAAATATAGTTAAGATTAGTAGAGATGAAAATGGGCTGGAAACAAGGCTACGTAAGAACCGAGCAATTTATTCTTACATTGGCGAAGAAGATGATACACATTCAAATAATTTCGAGGAAGACTTGCAACAAGGTATAAAAGAGGAGGAAACAGAAATAGAGATGCCACAGACAGTATATTTAACAAACGATGTAATGAAAGAAGAGTTGGTggttaaaaatttagaaatgGAAGAAGCGGGCCAAAAATTGGAAGCAGACAAGGGAGATGAATCTGAAGAAGAGGATTTGAATAGAAATTGTTCCATATTCAAAAACTCAGAAGAAaaagttaaagaaaaaataaaaattgaaccGAAAGATGAAAGAGATAAAAAGGATTCTGAAAGATCTGATAATGTCAAATTAAAAACGAGACGAGGAGGCAAGCGAAAGCCACGAGAGAATAAAGTTAGAGAAAAGGGTGATGAAAGCATAATCAGCGAATCTGAATTGAGTTTGGAGGAACAGATTGAAGAGTTTGAGAAACGAAAGCAATCAGATAATTATCAGCTTTCTCCATTTAAATGCGAATTGTGTTTCAGAGGGTATATAGACGAGGCGGCTTTTAAGTTGCACACCCTGAAGCATTCAGATAAAGAAAGGGCACACGAGTGCCACATATGCAAACTGCGGTACACGAGCGTTGGACGATTGCGGTCGCACGTGGCGATGTACCACATGTTCAAGTATAGTTGCAAGAAGTGTTCCTTCGTCAGCATGTCTCGaaatatGTCGAAAACGCATCAAAATTATCACAAGGGTACAACTTTTCCTTGTCCACATTGTGAAAAAGTTTTTGTCAAGAACACGTCGCGTTTCAACCACGTGCGCAAGAAGCACGCCACCCGCTGCGCGTGCACCGCGTGCGGGCGCGCCTTCAGCGGGGAGAAGGGGCTGAGCCACCACGTGAAGCTGACGCACCGCTTCGACGACGCCGCGGTGAGGGCACGCGTGATAGCAGATGTAGGTGTAGGGAAGCACGCCTCCCGCTGCGTGTGCACCGCGTGCGGCCGCGCATTCAGCGGGGAGAAGGGGCTGAGCCACCACGTGAGGCTGACGCACCGCTTCGACGACGCCGCGGTGAGGGCACGCGTGATAGCAGATGTAGGTGTAGGGAAGCACGCCTCCCGCTGCGTGTGCACCGCGTGCGGCCGCGCATTCAGCGGGGAGAAGGGGCTGAGCCATCACGTGAGGCTGACGCACCGCTTCGACGACGCCGCGGTGAGGGCACGCGTGATAGCAGATGTAGGTGTAGGGAAGCACGCCTCCCGCTGCGTGTGCACCGCGTGCGGCCGCGCATTCAGCGGGGAGAAGGGGCTGAGCCATCACGTGAGGCTGACGCACCGCTTCGACGACGCCGCGGTGAGGGCACGCGTGATAGCAGATGTAGGTGTAGGGGTGCCGCTAGAGGAGCACCGCTGTCAGCTGTGCGAGCTCAGGTTTGCTTCGCAGAAGGCGCTGGAGACGCACCTCAGCCAGAGCCACCCCGGCAGCTTGCCGCCAAGAGAGAGATCGAAGGTACGGAGAGGGAAGTCAAGTAAACCTAAGAGGCTGTCGAGGCCCGCGCCGCCCATACGCTGCGAGCAGTGCGacgcgcagctggcggacgcgCGCGCCTACCACGCGCACTTCAGGCGCGAGCACCGCGACAAGAATCGAACCCAGTACACCACGAGGCCCTTCCGCTGCATGTGCGAGGTCTGCGGCAGGACATTCCAGCACCCGTCGTTGCTGCGCGACCACATGGACAAGCACGCGGAGGGCAAGCGGCACCGCTGCGCGCGCTGCCAGAAGACCTTCCAGACCGCCATCGGCTTGCAGAATCATGTGAAACTACACGAGACAACGAATAAGCGATTCCcgtgtgacatctgtgacaggagCTACTCCAAAAAGGACAACCTACTTCGGCATCGGGTGAACCACACCACGCCGCCGCAGCACCAGTGCGCGACGTGCGACAAGCGGTTCCTCACGCGCTACTCCCTGAAGTCCCACGAGGACCACGTGCACCGCGGCCTGCCGTGGCCCAAGAGGGTGCGGGGCAAGCGCTCCCGCCCCGCCGACACCGACCAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCTTCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCTGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCTGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACTGCGCCGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCTGACACCGCCGAGGTGGGTGGTACACCCTGTATACTTCACCCCGCTGACACCGCCGAGAAACTAGATAAAGAAAAAGAATCATCCGAATTGTCGAGCCTGTGTGAGATGCCACTCTGA
- Protein Sequence
- MRCYVATCRYNSNDAPCGVTFHQFPKEPSLRDSWLQSLGMEDWVPSETSVVCTDHFEKSDLNVDQSEERLRAGALPSVTVQVCRMCLATGGRLLPLRERVGLQQAYHTLTGLARAWTAVRSRSRYSSCVGRSQPERGAGLPQQLCATCARLLLSHRRLRARALRAHAALSSLARDRHQITFKALQSIKGNVSHCSSNLQIKLYKPDHYDLEIKHVEDENSCTDRANHDEDSITQKNNVPVTVKEEKESNSILICQTSFEDSKIKLENDYVLYAEESDEEMLEELYESTPEHADNRVEYNCAPSLEDFDIEAENYCLEDSRVKEELKFESDGVEEEIYAPSQEDCDINVFETELVVTRMDIHGAIATEVENIINKMKLIDEDASSSRDARSNDPAIMDSDVVKDMVDDSETTLGDGNCPRNSEPAPADRIAFIGKYYITIADQVVKGKEHARGRSPHEYRRPKIPTQGLVPQTPLICRVCLATNNETYDMNEGDWRTHYEEITELYIGDDDKFPRALCWECAHRLAACHRFRARARLAHCLLEGLLKADGYITETNIVKISRDENGLETRLRKNRAIYSYIGEEDDTHSNNFEEDLQQGIKEEETEIEMPQTVYLTNDVMKEELVVKNLEMEEAGQKLEADKGDESEEEDLNRNCSIFKNSEEKVKEKIKIEPKDERDKKDSERSDNVKLKTRRGGKRKPRENKVREKGDESIISESELSLEEQIEEFEKRKQSDNYQLSPFKCELCFRGYIDEAAFKLHTLKHSDKERAHECHICKLRYTSVGRLRSHVAMYHMFKYSCKKCSFVSMSRNMSKTHQNYHKGTTFPCPHCEKVFVKNTSRFNHVRKKHATRCACTACGRAFSGEKGLSHHVKLTHRFDDAAVRARVIADVGVGKHASRCVCTACGRAFSGEKGLSHHVRLTHRFDDAAVRARVIADVGVGKHASRCVCTACGRAFSGEKGLSHHVRLTHRFDDAAVRARVIADVGVGKHASRCVCTACGRAFSGEKGLSHHVRLTHRFDDAAVRARVIADVGVGVPLEEHRCQLCELRFASQKALETHLSQSHPGSLPPRERSKVRRGKSSKPKRLSRPAPPIRCEQCDAQLADARAYHAHFRREHRDKNRTQYTTRPFRCMCEVCGRTFQHPSLLRDHMDKHAEGKRHRCARCQKTFQTAIGLQNHVKLHETTNKRFPCDICDRSYSKKDNLLRHRVNHTTPPQHQCATCDKRFLTRYSLKSHEDHVHRGLPWPKRVRGKRSRPADTDQVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHPADTFEVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHPADTAEVGGTPCILHCADTAEVGGTPCILHPADTAEVGGTPCILHPADTAEKLDKEKESSELSSLCEMPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00277435;
- 90% Identity
- iTF_00277435;
- 80% Identity
- iTF_00277435;