Cpal004229.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- Zfpm1
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000045.1:945895-966594[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.2 2.5e+02 2.6 0.3 2 23 7 28 6 28 0.94 2 13 0.91 53 4.7 0.4 1 23 1004 1027 1004 1027 0.90 3 13 7.8e-05 0.0046 17.5 2.2 2 23 1138 1159 1137 1159 0.97 4 13 0.007 0.41 11.3 1.5 1 23 1165 1187 1165 1187 0.98 5 13 0.0069 0.4 11.3 4.2 1 23 1193 1215 1193 1216 0.96 6 13 0.63 37 5.2 1.0 5 23 1229 1247 1228 1247 0.96 7 13 0.019 1.1 10.0 1.1 3 23 1254 1275 1253 1275 0.96 8 13 0.0079 0.46 11.2 0.1 2 23 1292 1312 1291 1312 0.97 9 13 0.0037 0.22 12.2 0.6 3 20 1320 1337 1318 1340 0.85 10 13 0.008 0.47 11.1 1.4 1 23 1348 1370 1348 1370 0.98 11 13 0.0055 0.32 11.7 7.2 1 23 1376 1398 1376 1398 0.98 12 13 6.4e-06 0.00037 20.9 1.3 1 23 1404 1428 1404 1428 0.98 13 13 0.001 0.058 14.0 5.1 1 23 1434 1456 1434 1457 0.95
Sequence Information
- Coding Sequence
- ATGGATCAGAGCAGAGTGCAATGCCCCGTGTGTACGCTGTACCTCCACAGTGGCATGAGCCTGGAGTCTCATTTGGACACACATCCAAAAGATCAAGTCATTAGAGCCCTGTGTAGTCTTTCAGCTAAAAATGGCAGTTACAGCAGTAGAACACCAACTCCCTCACACTCCGAACGATCCTACAGGAGTAGGTCGAGAACACCAGCCACAGATGATGGTATGCGGTGGATGGGTTCGCACCGCAGTAGTGAAAATGAAAAGTATTGGCATAGAGCACCAAGTAGAAACAAGTCGACCCCATTATCAAGTGTATCACGGAATGGAACTCCAGAGATAAGAGTGGGTGATAGTAGCTTTCACAGTAATCCGCCCAGCAATAGTCAATATTCTGAGGCATCTTGTCCATCAAAGTCTGATAAAATGCAACAAACATACATGGAGGCTCCGATGGGATCTGATTATGATCAACAGTACCCTTACTACCCTGAAGCTCAAGAGGATAAGGAGATTAAGTTTTCCCGAAGTTCTGAATATACCACaataaataattctaataatatttttacttataatGCTCCACCGGCTGCACCAAATGTCAAGTTACAGACTAATGTAACACCCACTATTACTAAAAGAAGCAACAATGTTGTGAAAATATTGCCGAAGCCTGCCCCAAATATACTTGTAAACACAAATGTTTCTGGAGTACAGTACATAGCGCCTGCTGTAAAACCCTTGCATGTAATGCTGCCCACAGCACCAGCATTTGTTCAGAAGAATGTCCAGAGTAACATGATCATGACAGGTGGTACAATACCATGTACCTCCATAATGCCTGCACAGTTAGGCAATAATCACCTGTCGCCTAGTAACTTTACCCCAGGCACAACAGTAGTGACCCAGAATTCACAAATTATTTACAGAGAAATGGTACACACCCTTGATGGAAAACCCTTTGTATCAAATATGCCCACGATTCTCAGTGGACACAATACTGTCACAAATGTAGCTCAGACCAGCTCAATGTATCAAAATGTTACAGTGGTAGATCAGTTTGGGAATAGTTCTTGTATGTATTCAGCTCCCCAACCAGTAATCACCAAGCCATGcaatacaacattttacaacaaTGCGTCTTTTAAAAACACATCAAATAAGGTGTCATCTAACACCAATAATGATCCCAAGAAGACTCTTATAATAGAAGTGAGTCCCATTATCACATCAGTTGCAAATAATCGCAATATCAATTCATCATCGCCCGCATCCCTATATTCCCAGCCGGAAACCAGACGACAGCCTAATCAGACAGTCCAGGTTGAGAATATAGAAACACCGGGCTCAAGCAAGGGGCTCAAAATTCTTAGTAACATTAAAGTGGAAGTACCAGTTCAGCATCACAAAAACATGTTGAACACGGTAATGGACCTGACTGGGTCTCAAGATATTGATTACCCAGATCGAGCTGAGACTCCCGAAAAGATTTTACCAGATTTGGATGATGCAAACCAAAATGGATGCAAGCAGCGTACCATTGTTAACAGTGAAAGCCTAGCATCTCATTCATTTTCTGTGATCAAAAATATTGGTAACCCTGGATTAGATTCATCTAAAATAATTGAAAGTGCAAACAAAATGGAAACAGAGTTTTCAGACAGTTGTCCCGTACCAGACTTGATCTGTAATGAGAAACCTTCAATATCACCTTGTAGTGAGTTATCTGAATTAGGGGATAATTCTACTGACCAACCTACTCTATCACCTAAACCTAAGACAATTCAGACTGTCCACAAAAAGCTAGATATCAAATCGGAAAAGAAGGATAAAAAGGAGGTAATTGATAGTAAGCGGACTGCAAAGTCACCTAAGAACAATgcattaaaattgaataatatctatgtaaagaaacataaaaaagtattacaaataaaaaatgccAAGTCACTTTCTGTAGCCAGTTCATCGAGCATTCATACAACTTGTACAGAACCTAAGCCTTCATCATCTAGCTGTAGATCACCTGAAAATTTTAGTATAAACAGGATATCCCTCAAAGAGAAAACTGAGATAAAGAGTGACATACTGCCACCTTTAGCAAGTGATATCATACGGCATGTTAACAATGACAGCCTTCACGAATTTGATGCAGACACTGAAGAACAGTCCATGGACATTGAACCAACGGTACCGTCTTCACTGGAACAGTCGCAAGAGTACCATCATGTTATGCCTGATGTGGTGCATGTAAAGGAAGAAGTTAATACAAGTAATGAATCTGTATTTCAGATTGAATTTGATAGGTTGAGGCATGATTCAGGGCCCGAAGCCTTAAGGCCAATCAATGTCATTTCTTATGGAAACATGATGGCCAGTGACTTGGATGATGATTCAAACCATAAGGAGCTTCTTGACCTGGAAGCCTCGTCAAAGAACAAACAGTTTGTTAGTATGATGAATGAGAACTATTTCGGGGATAATATTTATGCAGACTATTTTACCCCAGACAGAGGGGAAGCGTTTGATGCAGAAAAGGAGTCTAGCTTAGGAAAAAATGGCACGAAAGATGGTATTTACATATGGGGAGAGCCATCGCAGAAGGAGACAGGTGGAGAGTTTGTTTTACCGAATTTCATTGAAGACAGTTATAAGATGTCGGAAAGTGGGGTGGGCTACTCAGGTATTGGACATAGAGTGGGACAGATGGACGGTGAAGTCGATCGGTGCGAGAGAGACAGCAAAGTGGATGTGTTGAGCGAAAGCAGAAGCGAAGGAGAGGCCCCTCTGAACATCTGCGCCGACGAACGCATGCCGCCACGCGGAGAGCTTAGTGGCCAAGAGAGTAATGGCGACATGGAATCGCCATGGAGCGGGATATATACTGAGGTGACGCCCGCGGAGCCCTACGACCTGATAGCACGAGAAAGCTGGGTCTCCGATGGATCTGAGGCCGACACCAATGAAAAGAGAGAAAACATGGAGGAGGATCTCTCGTACCCGAAGGCGCGTCAGTACACGTGCGCTGCGTGCTGCGCCCGCTTCACGTCGGCGCGGGAGTTGCGCGCGCACCGCGCcctcgcgcacgcgccgcccgcgtgcTCGACCGCGAAGACTACTTACAGTAGGATGGTTACCGCGCGCGCCATTAAGAAGGAGGAGAAGACTGATGATTGCCTGCTTGACATAACACCAGGCAACCTGGCGACGAATCTCCTATCGCTGGGCGAGTCCAAGCCGGACATCGCGTCGTCGATGCTGCAGGTGTACGACGCGATGGCGGACTCGAAGCCGGCGCTGGAGGGGCTGATCAAGCAGGAGGCGAAGCGCCGCCGTCGCGACTTCGTCTGCCCCACCTGCAAGGAGGACCAGATCACCGACGTCGCCTTCCATGAACACCTCAAGATCCACCCGCTCGAGTGCCTGACCTGCGGAAAATGCTTCTTCAAGCGGCCCAACCTCGCGCTACACATGAAGACCCATCTGGGAATTAAGAATTACAAGTGCGACGTGTGCGAGAAGCGGTTCCTGACGCGCCAGAAGCTGTCGGAGCACTACAACGTGCACACGGGCCGCGCGCCCTTCAAGTGCACGCTATGCGACGACACCTTCCGCCGGTACTCCAACATGGTGCAGCACAGGGACCGCCACCACTTCCAGAAGAAGGCCAAGATCCGCGACTACGTGTGCCAGTGCGGCGCGGTGTTCCACTCGCGCGCCAAGCTGCTCTGGCACAAGGAGACGCACGACGACCGGCCGAAGGCGTGCCTGTACTGCAGCGACAAGTTCGTGCACGCGGCGTCGCTCACGCGGCAcgtgcgccgctcgcacaacGAGTACTACCTGTCCGAGCGCGTCAGGGGCAAGGTGGAGAACGTGCCGTGTCCCGTATGCAAGCAGGTGTACCTCCGTACGAACCTGCGCGCCCACCTCCAGACGCACAGCGGCAAGCGGCCGTACCTCTGCATCATCTGCAACAAGGCCTTCACCACCAAGTGGAACCTGAAGCTCCACCGCTGGACGCACGCCAGCCGCTCAGCGAAGCCCTACAAGTGCACCCTCTGCAAGGGCGCCTTCATACGCCACACCGAGTACGTATCGCACATGAACGCCCACAAGTCGGTCCGCCCATACACGTGCAACTATTGCGGCTGCCAGTTCATAAGAAAGTACAACTGCCAGCGCCACGTCAGAGAACACGAGATGGCGAAGAAGTACGTGTGCAAGGTGCCGGAATGCGGTAAGTCTTTCCACAGGAGTTATTACCTATCTGAACACATGAAAGTCCACAGTGGGGCGAGACCGTTTTCGTGTAACATTTGCGGGAAAACTTCCAGCAACAAGTCTAACCACAACAAGCACGTTAAGATCCACCACGCTAGGGAGCCGGTCGCGACGGAGGCGTAG
- Protein Sequence
- MDQSRVQCPVCTLYLHSGMSLESHLDTHPKDQVIRALCSLSAKNGSYSSRTPTPSHSERSYRSRSRTPATDDGMRWMGSHRSSENEKYWHRAPSRNKSTPLSSVSRNGTPEIRVGDSSFHSNPPSNSQYSEASCPSKSDKMQQTYMEAPMGSDYDQQYPYYPEAQEDKEIKFSRSSEYTTINNSNNIFTYNAPPAAPNVKLQTNVTPTITKRSNNVVKILPKPAPNILVNTNVSGVQYIAPAVKPLHVMLPTAPAFVQKNVQSNMIMTGGTIPCTSIMPAQLGNNHLSPSNFTPGTTVVTQNSQIIYREMVHTLDGKPFVSNMPTILSGHNTVTNVAQTSSMYQNVTVVDQFGNSSCMYSAPQPVITKPCNTTFYNNASFKNTSNKVSSNTNNDPKKTLIIEVSPIITSVANNRNINSSSPASLYSQPETRRQPNQTVQVENIETPGSSKGLKILSNIKVEVPVQHHKNMLNTVMDLTGSQDIDYPDRAETPEKILPDLDDANQNGCKQRTIVNSESLASHSFSVIKNIGNPGLDSSKIIESANKMETEFSDSCPVPDLICNEKPSISPCSELSELGDNSTDQPTLSPKPKTIQTVHKKLDIKSEKKDKKEVIDSKRTAKSPKNNALKLNNIYVKKHKKVLQIKNAKSLSVASSSSIHTTCTEPKPSSSSCRSPENFSINRISLKEKTEIKSDILPPLASDIIRHVNNDSLHEFDADTEEQSMDIEPTVPSSLEQSQEYHHVMPDVVHVKEEVNTSNESVFQIEFDRLRHDSGPEALRPINVISYGNMMASDLDDDSNHKELLDLEASSKNKQFVSMMNENYFGDNIYADYFTPDRGEAFDAEKESSLGKNGTKDGIYIWGEPSQKETGGEFVLPNFIEDSYKMSESGVGYSGIGHRVGQMDGEVDRCERDSKVDVLSESRSEGEAPLNICADERMPPRGELSGQESNGDMESPWSGIYTEVTPAEPYDLIARESWVSDGSEADTNEKRENMEEDLSYPKARQYTCAACCARFTSARELRAHRALAHAPPACSTAKTTYSRMVTARAIKKEEKTDDCLLDITPGNLATNLLSLGESKPDIASSMLQVYDAMADSKPALEGLIKQEAKRRRRDFVCPTCKEDQITDVAFHEHLKIHPLECLTCGKCFFKRPNLALHMKTHLGIKNYKCDVCEKRFLTRQKLSEHYNVHTGRAPFKCTLCDDTFRRYSNMVQHRDRHHFQKKAKIRDYVCQCGAVFHSRAKLLWHKETHDDRPKACLYCSDKFVHAASLTRHVRRSHNEYYLSERVRGKVENVPCPVCKQVYLRTNLRAHLQTHSGKRPYLCIICNKAFTTKWNLKLHRWTHASRSAKPYKCTLCKGAFIRHTEYVSHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -