Cpal005172.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000059.1:91643-101364[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.81 47 4.8 0.4 1 23 1259 1281 1259 1281 0.95 2 9 0.11 6.3 7.6 0.1 2 23 1349 1370 1348 1370 0.94 3 9 0.068 4 8.2 0.7 1 23 1374 1396 1374 1396 0.96 4 9 0.0076 0.45 11.2 1.7 1 23 1402 1425 1402 1425 0.85 5 9 0.18 11 6.9 1.2 2 23 1432 1454 1431 1454 0.89 6 9 4e-06 0.00023 21.5 1.3 1 23 1460 1483 1460 1483 0.98 7 9 0.00015 0.0088 16.6 1.8 1 23 1489 1511 1489 1511 0.98 8 9 4.3e-06 0.00025 21.4 1.8 1 23 1517 1539 1517 1539 0.99 9 9 1.1e-06 6.4e-05 23.3 1.9 1 23 1545 1567 1545 1568 0.96
Sequence Information
- Coding Sequence
- ATGAGTACCGTTAAAAACAACGGCCCCTTAATAGATCCAGCGCTCTGTAGATGTTGCAGGGCTATTAAAAAATGTAGAATTCTAACTTCGGAGTACACATGGATGGAGCAGAAAGAGGTGTACTCGGAAATGATAATGGATTGCTTCGGTATTCTTCTGTCGCACGTGGACGACGAGGAGCGCGACTGCGGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCCACCCGGCGCCGGCCAGCGGGCGAGGAGCGTGTGCGCGACGTGCGTGGTGCGGCTGCGGGACGCGTGCGCCTTCCGCGCGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGCGCtcgcggctggcgcgcgaccCCCACGGTGAGCACCCAGCGCTGGGCGTGGACATTCAGGATTCTCGGATGTTTTTCCTCGACTCTTACAGAGCAGAGTGCAAGAAGCTGGCGGAGGTGGAGCCGAAGCTGGAGCCCAGGGACGACGGCAGCGACCGCGAGGGGGACGAGGGGGGGGACTCGGgccccggcggcgcgggcggcggcgacgaGGCTGGCCCAGTTCCCGACGTGAGTCTCCCGAAGCAGGAGGCCGAGGTCCCCCCCGCCCCCGCGGACGAGGCGCCGGAGCCCCCCTCGGACGATGACGTCATGGACCGCGACTACACCTCCTCCTCCGACTCGGACAAGCCAATCAAGCGGAAGAGAAAGAAGAAGGGCAAGCTCGGCGCGGGCAAGAAGGAGAGGGTGGCCAAGAAGCATAAAGCAGGCACCTCCAGCACGAAGAGAGCGGCTCGAGCCGCCAAgccggccgcgccgctcgcgccgcccgccgagaAGAGGAACACTCACGACCGCGACCTCGACTGCATGTCGGAGGAGAACCTGCTCACCATAATCCAGTACTCCTTCGTGTGCCCCTTCAAGAACCGCCGCAACAACTACTACTGCTTCTACTGCAAGGACTACTACCCCAAGCCGGAGGACCTGCGCGACCACACCGCCGCCCACGACACCAAGCCCTTCCAGCTGCTCATGGGCTACAAGAAGATGCCCAAGATAGACATCACCAGGATAGACTGCAGGCTGTGCGCGACCAAGATAGACGATCTGGAGACATTCAAGCGTCACGTGGATCAGGTGCACAACAAGAAGATATACTTCGAGGCGCCGGACAAGATGCTGCTGTACCGGCTCACGTGGAACGACCTCGTGTGCGTCATGTGCGGAGACGTGTTCGAGGACTTCAACACGCTCAACACGCACATGGTGGAGCACTTCAGCAACTACACGTGCGACATCTGCGGGGTTTGCTTCCTGGAGAAACCTCGGCTGGACGCTCACCTCAAGCGGCATCGGGAGGACGAGCGGCACACGTGCGAGGTCTGCGGGAAGGTGTTCAAGTCGAACCACTACAAGGACATGCACGTGGACATAGTCCACAAGAAAAAGGCGATAATTCGGTGCCCGCGCTGCGACGAGTGCTTCATGTCGTACGCGATGAAGAACAAGCACCTCACCGACGCGCACGGCCAGAAGCGCGCGTACCCCTGCAACTTATGCGACAAGGTGTACAACAGACAGAAGACGCTGACGGAACACCAGCGGAGGAACCATCAGAAGGTGCTGAAGCACCAGTGCGAGTACTGCGACCAGAGGTTCTACCTGCCGTCCAGGCTGAAGGAGCACATGGCGACCCACACCGGGGAGAGGAACTTCAGGTGCGAGTACTGCGACAAGAGCTACCCGCGGCTCAAGTCGCTGCAGTACCACGTGAGGACGCACACCAACGACAGGCGGTACCGCTGCCACGTGTGCGGGCAGGCCTTCATACAGAACGCCAGCCTGAAGGCGCACATCAAGAGCCACCATCCGGAGTGCGACATGGACTCGTGTTACTTCTAG
- Protein Sequence
- MSTVKNNGPLIDPALCRCCRAIKKCRILTSEYTWMEQKEVYSEMIMDCFGILLSHVDDEERDCGVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPAPASGRGACARRAWCGCGTPPGAGQRARSVCATCVVRLRDACAFRAQVLQCEELFLRSRLARDPHGEHPALGVDIQDSRMFFLDSYRAECKKLAEVEPKLEPRDDGSDREGDEGGDSGPGGAGGGDEAGPVPDVSLPKQEAEVPPAPADEAPEPPSDDDVMDRDYTSSSDSDKPIKRKRKKKGKLGAGKKERVAKKHKAGTSSTKRAARAAKPAAPLAPPAEKRNTHDRDLDCMSEENLLTIIQYSFVCPFKNRRNNYYCFYCKDYYPKPEDLRDHTAAHDTKPFQLLMGYKKMPKIDITRIDCRLCATKIDDLETFKRHVDQVHNKKIYFEAPDKMLLYRLTWNDLVCVMCGDVFEDFNTLNTHMVEHFSNYTCDICGVCFLEKPRLDAHLKRHREDERHTCEVCGKVFKSNHYKDMHVDIVHKKKAIIRCPRCDECFMSYAMKNKHLTDAHGQKRAYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTGERNFRCEYCDKSYPRLKSLQYHVRTHTNDRRYRCHVCGQAFIQNASLKAHIKSHHPECDMDSCYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -