Cpal017294.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000445.1:9571-19190[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 2.3e-05 0.0013 19.2 0.2 2 23 821 843 820 843 0.96 2 29 0.0046 0.27 11.9 2.2 1 23 848 870 848 870 0.92 3 29 0.0012 0.072 13.7 3.9 1 23 876 898 876 898 0.97 4 29 0.055 3.2 8.5 2.0 1 23 904 926 904 926 0.97 5 29 1.3e-06 7.5e-05 23.1 0.1 1 23 932 954 932 954 0.96 6 29 0.12 7 7.5 0.6 1 23 960 982 960 982 0.94 7 29 0.19 11 6.8 0.3 1 17 988 1004 988 1005 0.92 8 29 8.6 5e+02 1.6 2.2 11 23 1009 1021 1004 1021 0.86 9 29 0.19 11 6.8 0.3 1 17 1027 1043 1027 1044 0.92 10 29 8.6 5e+02 1.6 2.2 11 23 1048 1060 1043 1060 0.86 11 29 0.19 11 6.8 0.3 1 17 1066 1082 1066 1083 0.92 12 29 8.6 5e+02 1.6 2.2 11 23 1087 1099 1082 1099 0.86 13 29 0.19 11 6.8 0.3 1 17 1105 1121 1105 1122 0.92 14 29 8.6 5e+02 1.6 2.2 11 23 1126 1138 1121 1138 0.86 15 29 0.19 11 6.8 0.3 1 17 1144 1160 1144 1161 0.92 16 29 8.6 5e+02 1.6 2.2 11 23 1165 1177 1160 1177 0.86 17 29 0.19 11 6.8 0.3 1 17 1183 1199 1183 1200 0.92 18 29 8.6 5e+02 1.6 2.2 11 23 1204 1216 1199 1216 0.86 19 29 0.19 11 6.8 0.3 1 17 1222 1238 1222 1239 0.92 20 29 8.6 5e+02 1.6 2.2 11 23 1243 1255 1238 1255 0.86 21 29 0.19 11 6.8 0.3 1 17 1261 1277 1261 1278 0.92 22 29 8.6 5e+02 1.6 2.2 11 23 1282 1294 1277 1294 0.86 23 29 0.19 11 6.8 0.3 1 17 1300 1316 1300 1317 0.92 24 29 8.6 5e+02 1.6 2.2 11 23 1321 1333 1316 1333 0.86 25 29 0.12 7 7.5 0.6 1 23 1349 1371 1349 1371 0.94 26 29 0.26 15 6.4 0.1 1 16 1377 1392 1377 1394 0.91 27 29 0.12 7 7.5 0.6 1 23 1420 1442 1420 1442 0.94 28 29 8.6e-06 0.0005 20.5 1.5 1 23 1448 1470 1448 1470 0.98 29 29 0.012 0.69 10.6 0.2 1 23 1476 1499 1476 1499 0.97
Sequence Information
- Coding Sequence
- atgagaacattcgacaaagGATCGGCCACTAACTCCGCCCTTcctacattggagcagcgtggtggagaatgctctagatctcctgaCTGTGATTGTGGAAGAGATCCGTACCCAATACTAGGACGCCAACACgATAACCTCTCCTGGTCCGAAGAACTGGAAGTATCGGAAGATGAGCTGAAAAGAGCAGTGAAGCGTCTTGGAGAGCATAATGTTGCACCCGGTCCGGACGGTCTCCCAGGCCGAGCATGGTCATTGGCCTTAACGGTTCTCGGGAGCAGGATGGCACAGCTATTTAACAGTTGTTTCCGCCTTGGAGTATTCCCATCCAGCTGGAAAGAGGCGCGGCTGGTCCTTCTGCAGAAAAAAGACAGGACCGCAAACTCACCCTCTGCGTATCGACCCATTTGTCTGCTGGATGAGGCCGGTAAGCTATTTGAGCGAGTTATTGCTAGCCGCCTCAGCGAACACCTAGCTCAGCAAGGCCCCGACTTGGCTGATAGCCAATTTGGATTCCGGAAGGGACGTTCCACGATAGACGCTATACTTCGCGTCCGCTCTATCTCGGAACAAGCTTTACGTGAGGGCAAGGTGGTTATGGCGGTTAGCCTCGATATCGTTAACGCCTTCAACTCCCTGCCCTGGAGGGCTATCAGGGAGGCACTAATATATCACAATGTGCCTCCTTACCTGCGCAATACGATCGGGGCGTATCTAAGTAACAGGTCGATCAAGTACATGGGTAGGGATGGTGTACACCACCGGGAGATAACTTGCGGCGTCCCACAGGGGTCAGTGTTAGGACCGCTCTTGTGGAATCTGGCATACGATGCGGTCCTGCGAACCAGTCTCCCCTTCGGCGTCAGCGTTGTCTGCTACGCGGATGACACGTTAGTGCTGGCCCAAGGTGACTCCTTCAGATGGACAGCTGAGGTTGCAGAACTGGGTGTGGCAAGCGTGGTTGCCGAAATCCATAATCTGGATCTTAGGGTAGCACCTTCGAAAACGGAGGCGTTGTGGTTCCATAACCTTCCCAGGCGGTTGGAACCACCCAGCTTGAGGATTCGCGTGGGTGACGTTGACCTCGAGGTAGGCCGGTATATCAAGTACCTGGGCCTTACCCTAGATGGTCGCTGGGGCTTCGAAGAGCACTTCGAGCGGTTGGTCCCTCGTATAGAGCGGGTAGCAGGTGCATTGCACCGTTTGTTACCCAATCTAGGAGGACCTCAGGAGGAAGTTCGCCGCCTCTACGCGGGCGTCGTGCGATCTATAGCACTCTACGGTGCCCCCGTGTGGTCGCACAGACTACTGGGCGTGCGACGCTGTAGAGCCGAACTCTATGGTGTGCAGCGCCGGATGGCAATCAGAGTGGCGCGGGGATATCGCACGATCTCGTTCGAGGCGGCTACGCTATTGGCACGTTTTCCGCCCCTGGATATCCTGGCTGGCATGGACGCAGAAATCTATACCCGATCTCGCGCCATGCGCCTAGAGGTCGAAAACGTGTCGGAAACCGAGCTCGGAGTGCTTAAGCAACAGGCGCACCAACAAGTGCTTGCAGAATGGCGCGCGCGTCTGGCGGAGGAGAGATGCGTGCGTCAGCGAATTGTCAGGGCGATCCTACCAAACTTTGATGCCTGGCTAGGAAGAAAGGAGGGCAACGTCACCTtccggctgacacaggtgctcaccggacatggctgtttcggtgAGTACCTGTTTCGTATCGGTCGTGAGGCAACACCGCAGTGCCATCACTGTGGCGGGAACCAGGACGACGCACAGCACACACTCGAGGAGTGCCCCGCATGGGAGTCCGAGCGGCGCGTCCTGGTGGAACGGATTGGTAGCGACCTTTCTCCGTCAGTGGTAGTAGCTAGTATGCTCTCAGAGAGTCGTGCCTGGAAGGCGGTGGTCTCTTTCTGCGAAACTGTTTTGACACAGAAGGAGACCGCAGAGCGGGAACGCGAGAGAGCTGACCCGGCTCGGAGACGGGAGAAAGGTGAAGAAAACCTTCCTAAGCAATTCTGCTACAACTGCATAATCAAAATAGAATCGGCATTCATGTTCATAAAAGAAGCACAAAATGTCAACATTACCCTCAGGAATATTATATCTAGAACGGAGACCCGAGTTATCATTGAACCGGAGAGGTACAAACATATAGAAGTTCGGGATAAGCCAGTAAGCAATCTAAAATTAACATTACCAGATTACAAACTGTGTACAGTCATAAGTAGCACAGAGCAGGTTAGCAATACCAGCGTCCATAAAGATATACAGCCTAAACTAGTACCTGAAATAGTAGACGAGACAAATAATGTTGAAGACTTAGATGTGCAAGATACAGAAGAATTCTCCACTGACATTGAACACGCAGAATTACAGGAACAACAAAATGATGCTAAGGTTGAATGTGAAAGTAGTAAAATAGAATCTGCAAGTGCAATAGAAAAAATTGTCTGTCCAGTTTGTCGGAAGAGCTTTTCATCCAAAGTGTGGTTTGCTAAACACATGGAGAAGGTGCATGGGAGTCGCAAATATTGTTGTACCCAGTGTCCTAAAACATTCTCCAAGCCCTCCCAGGTGGCGTACCACTCAGTATCACATTCAGAAGAGCGTAGGTTTTCTTGCAATGTGTGCAGCAAGAGATTCAAGCTTAGAAAACAGCTCACAACACACTCCAAAAGCCACAGTGACGTGAGACCATATGCTTGTGATATTTGTTCTATGAGATTCAAAATAAAAAGTGTATTAAAATGCCACATGAAAGTGCACGAAGACCACAAGCAATATTTATGTTCTTTCTGCGGATGGAGTTTTGCTCAAGCGAGCAACCTGGCGGCGCACGTGCGCACGCACACGGGCGCCAAGCCGCACGCGTGCGCGCAGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCCCTGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCCCTGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCCCTGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCCCTGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCCCTGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCCCTGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCCCTGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCCCTGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCCCTGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACCTTACCATAGCACACCCCGCCGAGCCGCACGCGTGCGCGCAGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCCCTGGTGACCGCTCCAGCTTACCATAGCACACCCCGCCGAGACGCACGCGTGCGCGCACTTACCATAGCACACCCCGCCGAGCCGCACGCGTGCGCGCAGTGCGCCTTCCGCGCCGCGTCCGCCTCCAGCCTgcgccgccacgagcgccgccaCCGCGACGCGCGCCCGCACGTCTGCGCGCACTGCCGGAAGGGGTTCTACGACGCCAGCGCGCTGGCCCGCCACATCCGCACGCACACGGGCGAGCTGCCCTACCAGTGcccgagctgcgcgcgcgcattcGCCGACAGCTGGAAGCGCAAGACGCACCTCATGCGCGCGCACCGGCTCGCGCTGCACGACATCCCGCGCCTGCGCCGCGACCCCCGCCCCGCGCGCTGA
- Protein Sequence
- MRTFDKGSATNSALPTLEQRGGECSRSPDCDCGRDPYPILGRQHDNLSWSEELEVSEDELKRAVKRLGEHNVAPGPDGLPGRAWSLALTVLGSRMAQLFNSCFRLGVFPSSWKEARLVLLQKKDRTANSPSAYRPICLLDEAGKLFERVIASRLSEHLAQQGPDLADSQFGFRKGRSTIDAILRVRSISEQALREGKVVMAVSLDIVNAFNSLPWRAIREALIYHNVPPYLRNTIGAYLSNRSIKYMGRDGVHHREITCGVPQGSVLGPLLWNLAYDAVLRTSLPFGVSVVCYADDTLVLAQGDSFRWTAEVAELGVASVVAEIHNLDLRVAPSKTEALWFHNLPRRLEPPSLRIRVGDVDLEVGRYIKYLGLTLDGRWGFEEHFERLVPRIERVAGALHRLLPNLGGPQEEVRRLYAGVVRSIALYGAPVWSHRLLGVRRCRAELYGVQRRMAIRVARGYRTISFEAATLLARFPPLDILAGMDAEIYTRSRAMRLEVENVSETELGVLKQQAHQQVLAEWRARLAEERCVRQRIVRAILPNFDAWLGRKEGNVTFRLTQVLTGHGCFGEYLFRIGREATPQCHHCGGNQDDAQHTLEECPAWESERRVLVERIGSDLSPSVVVASMLSESRAWKAVVSFCETVLTQKETAERERERADPARRREKGEENLPKQFCYNCIIKIESAFMFIKEAQNVNITLRNIISRTETRVIIEPERYKHIEVRDKPVSNLKLTLPDYKLCTVISSTEQVSNTSVHKDIQPKLVPEIVDETNNVEDLDVQDTEEFSTDIEHAELQEQQNDAKVECESSKIESASAIEKIVCPVCRKSFSSKVWFAKHMEKVHGSRKYCCTQCPKTFSKPSQVAYHSVSHSEERRFSCNVCSKRFKLRKQLTTHSKSHSDVRPYACDICSMRFKIKSVLKCHMKVHEDHKQYLCSFCGWSFAQASNLAAHVRTHTGAKPHACAQCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALCAFRAASASSLRRHERRHRDARPHLTIAHPAEPHACAQCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALVTAPAYHSTPRRDARVRALTIAHPAEPHACAQCAFRAASASSLRRHERRHRDARPHVCAHCRKGFYDASALARHIRTHTGELPYQCPSCARAFADSWKRKTHLMRAHRLALHDIPRLRRDPRPAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -