Basic Information

Insect: Carterocephalus palaemon
Gene Symbol: A4gnt_1
Assembly: GCA_944567795.1
Location: CALYMS010000254.1:535778-546655[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.47 27 5.6 0.0 2 21 375 394 374 395 0.91

2 8 1.8e-05 0.001 19.5 0.2 1 23 405 427 405 427 0.97

3 8 0.15 8.6 7.2 1.2 1 23 433 455 433 455 0.98

4 8 4.8e-06 0.00028 21.3 0.5 2 23 462 483 461 483 0.97

5 8 4.8e-06 0.00028 21.3 0.5 2 23 511 532 510 532 0.97

6 8 9.3e-06 0.00054 20.4 0.2 2 23 560 581 559 581 0.97

7 8 0.00015 0.0086 16.6 1.9 2 23 587 609 586 609 0.96

8 8 0.00018 0.011 16.3 2.9 1 23 615 638 615 638 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.47	27	5.6	0.0	2	21	375	394	374	395	0.91
2	8	1.8e-05	0.001	19.5	0.2	1	23	405	427	405	427	0.97
3	8	0.15	8.6	7.2	1.2	1	23	433	455	433	455	0.98
4	8	4.8e-06	0.00028	21.3	0.5	2	23	462	483	461	483	0.97
5	8	4.8e-06	0.00028	21.3	0.5	2	23	511	532	510	532	0.97
6	8	9.3e-06	0.00054	20.4	0.2	2	23	560	581	559	581	0.97
7	8	0.00015	0.0086	16.6	1.9	2	23	587	609	586	609	0.96
8	8	0.00018	0.011	16.3	2.9	1	23	615	638	615	638	0.95

Sequence Information

Coding Sequence: ATGACAATAATCAGCACATTACTGAATAACCTCAAGCGAAGGAAGCTGCTCGTATGCAGCATAATATTCACCATTTGCCTCACAATCTTAAACAACAACTTGGGGGACGAACTAAGCTTTACACGCTGGGGTCCGGTAGCAAACATATCCTGTCATTACGtcgaaaataacaatattttacccGAACTTGGAGAAGCGGGTTATAAACCCCAGCCACGCTCGATATTCTTTCACGAAACGTCCTGTGAGGGCAATCTGACCTCCAGGCAAGCCTGTGCTGTAGAATCAGCTGCTAGAGCTCATCCAAACTGGGATATCCACGTCCTCTTTAGCACGCCGCTCAGTAAACTTGCTCTTCATGATGGCAACCTGAGACAGTTGCGGGCGATAAAGAACGTTAAGCTGATGAGAGTGAACATAAAAGACTATGCAGTTGGAACGCCTCTTGAAGAATTCATCCTCGAAGGCGGGTTAAACAGGTCCCAATGGAGATTGCAGCATACGTCGGACGTTCTTCGATACCTGACTCTGTACAAATGGGGAGGGGTGTATATGGATCTGGATGTGGTAGTAGCCAGGTCAATAGCTTCGCTGGCGAGGAACTGGGCAGCTCGGATAGGTAGCCAGTCTGTGGCGTCAGGCGTCATGGCGTTCTCAAGGGATGCTGTCGGAAGGAACATCGCTGATGCAGCAGTAAGAGACTTAGGCTCCAACTTCCGCGGAGACGTGTGGTCCAACAACGGGGCCGGCGTCATGACGCGGGTGCTCAAGGACATTTGCTCCACGAAGGACGCCAGGCTCATGTCGGCTGATACTTGTAGCGGTTTTGAAGTCTACGGGCCTCAATTCTTCTATCCAATAAGACAAGAACAGGGCAAAAAGTACTTTAAGGCAGGAAACCTATACGTAGGATATGTATACGTTCACCATCTCTGGAACCACCTCACGAAGAAATTTAAAGTGGAGAGAGGTTCCCCTTACTCCAAGTTAGCTATGAAATACTGTCCGacgatttttaatttatatgTGAATGATTCAACCCTGGAGAACTACAACAGTGAAAGTGAAAAGAAACATGGTGGATACTTCACAGTGGAGGACGGTGGTATAACGAGAGAGTGGATATGTGGGAAGTGCAAGCGAATATTCGGTAATATTGAGGATTTCGCGGAGCACGAGCGCCTGCCGACCTGCCGCCCCAAGCCCACCACCTTCATCTGCGAGACGTGCGGCGCCGACTTCAAGACGATGCCCAATCTAAAGAGACACATCCAAATCCACACCGGCGAGTTGCGCTTCCCGTGCTCACAGTGcgcgtaccgcgcgcgcacCCGCTGCGCCCTCCTCATCCACGAGCGGCGGCACTCGggcgcgcgcccgctgcgcTGCCCGCACTGCCCCGCCACGTTCGCGAGCCCCTCCAACCTGGGCTCGCACCGCAAGACCCACCTGCCGCCGGCGCTGCGCTGCGACGCGTGCCACAGGGGGTTCAAGTTCAAAGTGCGGCGGCACGCGggcgcgcgcccgctgcgcTGCCCGCACTGCCCCGCCACGTTCGCGAGCCCCTCCAACCTGGGCTCGCACCGCAAGACCCACCTGCCGCCGGCGCTGCGCTGCGACGCGTGCCACAGGGGGTTCAAGTTCAAAGTGCGGCGGCACTCGggcgcgcgcccgctgcgcTGCCCGCACTGCCCCGCCGCGTTCGCGAGCCCCTCCAACCTGGGCTCGCACCGCAAGACCCACCTGCCGCCGGCGCTGCGCTGCGACACGTGCCACAGGGGGTTCAAGTTCAAAGTGAATCTGTTGAACCACATAGCAACTCAGCACAGAAGTGCAAAACCATACAGCTGTAACACCTGTGGGAAATCATTTGCAACACGAAAATTGATTCGCCATCACGAACTGAAGACTCACAACAGACCCAAGATGAGGACAGGACAACTTCCTGTTTACATGCAGCTGCAAGACAATATCGCTGattga
Protein Sequence: MTIISTLLNNLKRRKLLVCSIIFTICLTILNNNLGDELSFTRWGPVANISCHYVENNNILPELGEAGYKPQPRSIFFHETSCEGNLTSRQACAVESAARAHPNWDIHVLFSTPLSKLALHDGNLRQLRAIKNVKLMRVNIKDYAVGTPLEEFILEGGLNRSQWRLQHTSDVLRYLTLYKWGGVYMDLDVVVARSIASLARNWAARIGSQSVASGVMAFSRDAVGRNIADAAVRDLGSNFRGDVWSNNGAGVMTRVLKDICSTKDARLMSADTCSGFEVYGPQFFYPIRQEQGKKYFKAGNLYVGYVYVHHLWNHLTKKFKVERGSPYSKLAMKYCPTIFNLYVNDSTLENYNSESEKKHGGYFTVEDGGITREWICGKCKRIFGNIEDFAEHERLPTCRPKPTTFICETCGADFKTMPNLKRHIQIHTGELRFPCSQCAYRARTRCALLIHERRHSGARPLRCPHCPATFASPSNLGSHRKTHLPPALRCDACHRGFKFKVRRHAGARPLRCPHCPATFASPSNLGSHRKTHLPPALRCDACHRGFKFKVRRHSGARPLRCPHCPAAFASPSNLGSHRKTHLPPALRCDTCHRGFKFKVNLLNHIATQHRSAKPYSCNTCGKSFATRKLIRHHELKTHNRPKMRTGQLPVYMQLQDNIAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -