Cpal015751.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000267.1:216513-220276[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.83 49 4.8 0.1 3 23 222 243 220 243 0.93 2 10 0.1 6.1 7.6 0.1 2 23 268 290 267 290 0.92 3 10 0.033 1.9 9.2 0.5 2 23 313 334 312 334 0.95 4 10 0.00012 0.0071 16.9 0.8 1 23 338 360 338 360 0.98 5 10 0.17 9.9 7.0 5.3 1 13 365 377 365 388 0.86 6 10 2.1e-05 0.0013 19.2 3.3 3 23 398 419 396 419 0.96 7 10 3.1e-05 0.0018 18.7 1.5 1 23 426 449 426 449 0.98 8 10 0.004 0.24 12.1 1.6 1 23 455 477 455 477 0.96 9 10 1e-06 5.8e-05 23.4 2.3 1 23 483 505 483 505 0.98 10 10 1.7e-05 0.00099 19.6 1.7 1 23 511 534 511 534 0.97
Sequence Information
- Coding Sequence
- ATGAACTTAGGCACAGCCTGCCGATGTTGCTTAGTTCGACCGCCAGAGAATGATCTAAAAAAACCATATACTCGCAACGAGAGAACTGAAATTTACGCTGACTTACTTCGAGAGTGCTTCGAAATTCATATATTGTCAGGAGCTGATGATGGCTACCAAGGGATCTGCGGGACGTGTGTTTGCAGGCTGCGCGATGCATTTGACTTTAAGCAGCAAGTGGTCAGGTGCCAGGGGACATTGCAGATGATCAAAACTGGAGATGCAGATGATGAAGCTGAAAAATCAGCAGTGAAAGAGGAATTTCCAGACAATGACGAGGACAACTATAGTATGTTTTATGATGTAGACGATATCAAAGAAGAATTGTCCGACTTGGAAGGCTTGCAAGAGGATTTTTTGAGTTTGGATAAGGTCAAGTTAAAATGCGAGGCAGAGAAAAAGAAGAACGGGAGGAAGAGATCTTTGGTGCTGGAGAAGGGAAATGGCACTAAAACCAAGAGGAATAGAAAGATTGTACTGAAAAGTCTGACAGAATTGGACGAATTGTCTGACGACGAAGGCGAATCGATATCAGAGACGATGCAGTACAAGTTAAACATCCAGAACATTCTAAAGTACTCCAACTGTACGCCATTCTTCAATAAATCGATAGCCGGAATCGCTTGCGCATACTGCAAGGAATTGTATAAAGACATACGACTTCTGAGCGACCATACGAATGAAAATCACGAGCGGGGCGATATTGATAACAAGCGATACGACAAGGATTCGCTTTCTATTAAAATCGATATCACAGATTTAAAATGCAATATCTGCAACGCGAAAATTAACGTCATATCTGATTTAAAAACCCACTTGACAGAGGAACACAGGATAAAATTCTACCCCGTCTACGATTGTTTCGTGGAATTCAAACTGACCGATTCTTCCATACTAAATTGCGCCCTCTGCACGTCGTCTTTTGAAACCTTCAAGATGTTGCTGCAACACATGAACGGCCACTACAGGAACTATATATGTGACGTCTGCGATTTGGGATTCATCAATCGTCAGCGATTGAAAACTCACAAGAGAACTCACGACGTCGGCAATTTTAAATGCTCGTTTTGCGACAAAGTTTTCAGTACGAAAGTCAGGCAGAAATGTCACGAGAAGTACTCTCATAATACCGGCCCGAGATACACCACTAATTGTTCGCATTGCGACAAATCATTCACGAGTTACTACCAGAGGAATCGACATATGAACGTCGTACACCAGATCTCTGCGGCGACCTACAAATGTAATATATGCGAAACATTCTTTATTCTCAAGTCAAAGTTGACAAGTCATATTAAAAAGGTGCATTTGATGGAAAGAAATCATATATGCGCTCAATGTGGCCTCGGCTTCTTCACTCAGCATTCCTTAGACGATCACATGGTGAAGCATAATGGGGAACGGGTCTTCGAGTGCACGGTTTGCCATAAGGCGTATGCGAGGAAGAAAACCTTGCGGGAACACATGAGGATACACAACAATGATAGGCGGTTCAAATGTGGTGTTTGTGATATGGCGTTCGTACAGAAATGTAGCTTGAAATCTCACATGCTGTCCAATCACGGTGTAACGCTAGTGGAGTTTGAGAGTGGTAGACACGATATCAATAGGCCTGGGAACTAG
- Protein Sequence
- MNLGTACRCCLVRPPENDLKKPYTRNERTEIYADLLRECFEIHILSGADDGYQGICGTCVCRLRDAFDFKQQVVRCQGTLQMIKTGDADDEAEKSAVKEEFPDNDEDNYSMFYDVDDIKEELSDLEGLQEDFLSLDKVKLKCEAEKKKNGRKRSLVLEKGNGTKTKRNRKIVLKSLTELDELSDDEGESISETMQYKLNIQNILKYSNCTPFFNKSIAGIACAYCKELYKDIRLLSDHTNENHERGDIDNKRYDKDSLSIKIDITDLKCNICNAKINVISDLKTHLTEEHRIKFYPVYDCFVEFKLTDSSILNCALCTSSFETFKMLLQHMNGHYRNYICDVCDLGFINRQRLKTHKRTHDVGNFKCSFCDKVFSTKVRQKCHEKYSHNTGPRYTTNCSHCDKSFTSYYQRNRHMNVVHQISAATYKCNICETFFILKSKLTSHIKKVHLMERNHICAQCGLGFFTQHSLDDHMVKHNGERVFECTVCHKAYARKKTLREHMRIHNNDRRFKCGVCDMAFVQKCSLKSHMLSNHGVTLVEFESGRHDINRPGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -