Cpal013393.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- zfh1
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000188.1:138165-150065[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0045 0.26 11.9 0.3 1 23 181 204 181 204 0.97 2 12 0.046 2.7 8.8 0.3 1 23 210 232 210 232 0.92 3 12 0.02 1.2 9.9 0.1 1 23 236 259 236 259 0.95 4 12 0.033 1.9 9.2 1.5 1 23 290 313 290 313 0.97 5 12 0.011 0.63 10.7 4.4 1 23 316 339 316 339 0.94 6 12 0.004 0.24 12.1 0.8 2 21 348 367 347 372 0.93 7 12 0.0038 0.22 12.2 1.1 1 23 379 402 379 402 0.96 8 12 7 4.1e+02 1.9 2.9 1 23 408 431 408 431 0.90 9 12 0.00014 0.008 16.7 0.5 3 23 442 462 441 462 0.98 10 12 0.00012 0.007 16.9 0.0 1 23 468 491 468 491 0.95 11 12 0.00012 0.007 16.9 0.0 1 23 510 533 510 533 0.95 12 12 0.00012 0.007 16.9 0.0 1 23 552 575 552 575 0.95
Sequence Information
- Coding Sequence
- ATGGCGGACTTATTGATGGAACCAGTTTTGCACAAGAAGATACTAAGTGAACAACTATCCACTCTAACAACATTCTTTACAAACACACCAGATGTTTTAATATCTGAAAACGTAATTTCCGAAGACGACGCAAAGGTTGATATAGACATCAAACATAGTGAAACACAAAACGATGAAGTTAAAGTTGAATATGAAGAGAGTTCGGATATCAAAGAGGAGAGATATGACTGTACCGATTTTGATGTTAAACTTGaggattatgatgatgatgacggtTGTGATGAAACAGGAAACGAAGGATTATTCGCGGAAGACATAGAAATGACTGACATTGCAATCAAAGAAGAGTTATTGATTAACAAAGAGACTAAAAAGACGGAAAGAAGAAAACCGTTGAAATCGAAATACAAATCGATTGAAATAGATGTAAACGATCGCGTGACTCTCAACAAATTGTGTCGGAGGGTGAAGGTTGATAAGGAAGAAAGAGACAAATGTGTGAGTGAGACAAGGGCAGCTAGAGAGTTTTTGAAAGCAACTTTCAACTGCCAGAAATGCGTTTATGTATTCAGCGATGAACCAATGTACGTGAATCATATTGAGACATATCATTTAGAGACCAACGTCTACGAGTGCAAGGAATGTGATGTACGGTGTTCTACAGAGGAGATTCTCGTGAGACACGTAGATGGTCACGGGTACATATATGATTGCTTGGTGTGCGGCTACAAATGCCCCAGTGCGGGGCAAATTCGTCTACACATCGGCACGGCGCACCGCATCGTGTACGAGTGTCGCAAGTGTGGCTGCCTGTTCCGATCCAGAAATAGTGATTTCCATAAGCACTACAAAGATCATCACAAATGGTTCATCTGCGACTACTGTGGTGTGAAGCGTTCAAAGAAGCTATATATCTCAAGACATATCAGAAGAAAACACGGTGAACACAAATGCAAGTTTTGTAAGAGGAGGTACGTCAAATACGACAGTATGAAGCGCCACATAGCCCTGCAACACACGAAGCACGTGACCGAGGAGTCGTACTGCGTTGAATGCAACAAGCAGTTCGACAACATATCGCAGTATAAGCAGCATTTGAAGCTGAGTGTTAAACACAAGCCGCAGAGGAAAACGTTTTCTTGCCCAGAATGCTCAAACGTTTACGCGAAGAATTCTGCAATGACCAACCACTATAAACACGTCCATTTGCAGAAAACCAACCATTACTGCGAGAAATGTTCCAGATACTTCCTAAACGGTTTCCGTCTCCGTACTCACATAGCGTCGTATCATAACAAGATTCAGCTGCCGAAGAACAAGATATGCAAATACTGCGGCCGTGGATTCGTGACGAACCGCATCCTGAACAACCACGTGCGgacgcacacgggcgagcgGCCGTTCCCGTGCCCGCAGTGCGGCGCCACGTTCGCGCAGCGCGTCGCGCTCGTcacgcacgcgcgcgccgtgcaCAAGACGAACCGCATCCTAAACAACCACGTGCGgacgcacacgggcgagcgGCCGTTCCCGTGCCCGCAGTGCGGCGCCACGTTCGCGCAGCGCGTCGCGCTCGTcacgcacgcgcgcgccgtgcaCAAGACGAACCGCATCCTAAACAACCACGTGCGgacgcacacgggcgagcgGCCGTTCCCGTGCCCGCAGTGCGGCGCCACGTTCGCGCAGCGCGTCGCGCTCGTcacgcacgcgcgcgccgtgcaCAAGGTGCCCATGAGCTTCGCGACACGACCTAAACTGTGA
- Protein Sequence
- MADLLMEPVLHKKILSEQLSTLTTFFTNTPDVLISENVISEDDAKVDIDIKHSETQNDEVKVEYEESSDIKEERYDCTDFDVKLEDYDDDDGCDETGNEGLFAEDIEMTDIAIKEELLINKETKKTERRKPLKSKYKSIEIDVNDRVTLNKLCRRVKVDKEERDKCVSETRAAREFLKATFNCQKCVYVFSDEPMYVNHIETYHLETNVYECKECDVRCSTEEILVRHVDGHGYIYDCLVCGYKCPSAGQIRLHIGTAHRIVYECRKCGCLFRSRNSDFHKHYKDHHKWFICDYCGVKRSKKLYISRHIRRKHGEHKCKFCKRRYVKYDSMKRHIALQHTKHVTEESYCVECNKQFDNISQYKQHLKLSVKHKPQRKTFSCPECSNVYAKNSAMTNHYKHVHLQKTNHYCEKCSRYFLNGFRLRTHIASYHNKIQLPKNKICKYCGRGFVTNRILNNHVRTHTGERPFPCPQCGATFAQRVALVTHARAVHKTNRILNNHVRTHTGERPFPCPQCGATFAQRVALVTHARAVHKTNRILNNHVRTHTGERPFPCPQCGATFAQRVALVTHARAVHKVPMSFATRPKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -