Basic Information

Insect: Carterocephalus palaemon
Gene Symbol: -
Assembly: GCA_944567795.1
Location: CALYMS010000108.1:46554-57509[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.27 16 6.4 0.4 3 23 114 134 112 134 0.96

2 18 0.1 5.9 7.7 0.0 2 20 138 156 137 157 0.94

3 18 0.5 29 5.5 0.4 2 23 392 414 391 414 0.95

4 18 0.36 21 6.0 0.2 1 20 422 441 422 442 0.94

5 18 0.038 2.2 9.0 1.2 3 23 454 474 453 474 0.96

6 18 2.3 1.4e+02 3.4 0.5 1 23 490 513 490 513 0.77

7 18 0.0022 0.13 12.9 2.3 1 23 522 545 522 545 0.95

8 18 0.58 34 5.3 0.2 2 22 621 641 620 643 0.84

9 18 6 3.5e+02 2.1 1.5 1 23 648 671 648 671 0.88

10 18 5.1e-05 0.003 18.0 1.8 1 23 677 699 677 699 0.96

11 18 3.7e-05 0.0022 18.5 2.6 1 23 706 728 706 728 0.98

12 18 8.6e-05 0.005 17.3 2.3 1 23 733 755 733 755 0.96

13 18 0.0018 0.1 13.2 0.9 1 23 761 783 761 783 0.98

14 18 5.7e-06 0.00034 21.0 1.4 1 23 789 811 789 811 0.98

15 18 0.0003 0.017 15.6 1.9 2 23 818 839 818 839 0.98

16 18 0.00037 0.021 15.4 0.8 2 23 847 869 846 869 0.97

17 18 0.00016 0.0091 16.5 0.2 1 23 874 896 874 896 0.98

18 18 0.0012 0.069 13.8 1.1 1 23 902 925 902 925 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.27	16	6.4	0.4	3	23	114	134	112	134	0.96
2	18	0.1	5.9	7.7	0.0	2	20	138	156	137	157	0.94
3	18	0.5	29	5.5	0.4	2	23	392	414	391	414	0.95
4	18	0.36	21	6.0	0.2	1	20	422	441	422	442	0.94
5	18	0.038	2.2	9.0	1.2	3	23	454	474	453	474	0.96
6	18	2.3	1.4e+02	3.4	0.5	1	23	490	513	490	513	0.77
7	18	0.0022	0.13	12.9	2.3	1	23	522	545	522	545	0.95
8	18	0.58	34	5.3	0.2	2	22	621	641	620	643	0.84
9	18	6	3.5e+02	2.1	1.5	1	23	648	671	648	671	0.88
10	18	5.1e-05	0.003	18.0	1.8	1	23	677	699	677	699	0.96
11	18	3.7e-05	0.0022	18.5	2.6	1	23	706	728	706	728	0.98
12	18	8.6e-05	0.005	17.3	2.3	1	23	733	755	733	755	0.96
13	18	0.0018	0.1	13.2	0.9	1	23	761	783	761	783	0.98
14	18	5.7e-06	0.00034	21.0	1.4	1	23	789	811	789	811	0.98
15	18	0.0003	0.017	15.6	1.9	2	23	818	839	818	839	0.98
16	18	0.00037	0.021	15.4	0.8	2	23	847	869	846	869	0.97
17	18	0.00016	0.0091	16.5	0.2	1	23	874	896	874	896	0.98
18	18	0.0012	0.069	13.8	1.1	1	23	902	925	902	925	0.97

Sequence Information

Coding Sequence: ATGGCGTCAGATGAGTCTGACGACGAACCTTTGTCGGTATTAGCGGCTGCTAAGAAATCTAATCCCGAGAAGTTCGAATGTGAAATTACTCCGGTAGACGATAAAGCGTCGAAAAAACGGAAGTCAAGTCCGTCCAAAAAGTCCGGATTGACAATAAGGATAAACCGTAAACTCAATACGATAACCAGTCCACCAGTAATCGATAGGCCATTAGATGTTTGGTTGTATTTAAAAGATTTGAATCCAACTGGACCTTACAAGTGTCTTCTTTGTGCAGATTGGTTTATAAATCGCTCTAAAATGGTGGTACACTACGTCCTTAATCACAAGAAAGACTTTTGTGGTATCTGCAGGTATTTTGTAAATGATCGAGAAAGCTGGAAATCACATATCAACTTCCATGTTCCATGGCCATGTTCACAGTGTGTGGAGACCTTTCCGACTGATGCAAGTCTCCGACAACACCTTGCTTGTGTGCATCAGCTTGTTCACTGTCGCCTATGTCACTTCAGAGTACCCGTAGGAGAGCCTTATGAGTCACATTTAAGTCAAAAACACAATGTGTCAGATATTGCAAGGGTAGACGATGATAGTTATTGGGAAGTTGATATGGATGGAATGACAAAATTCAACTGCTCTTTATGCTCTCGACCTAACAATTTAACGGCTACATTCTTCAATCATTACATGGGGTTCCACCACTTCACACTTAAATGCATTACTAACTTCATTTCTGGAACTGATCCACCATTTACCGTTCATGGAGCTGAAATCAGCTCACAATTTGTTGATGGCCAACTTAAGGATTTAACAGCCTTTGGCTATGTAGATTTGGATTCTAAATCTGCAGAAATAATACAGGAGAGATTCCAAAGTTGTGAAAACAATGATCCAACAAAATTTTTGgatgttgaaataaaaaatgaaaatgctGAGTATGAGGATATTCACGCGAAAGATGATGAGGATGACTCAAACAAAACAGAGGATCAGAATGAAACACTCAATGGCTATGATGGAGATGATGATTTTGATGTAACTTTAACAGAAGTAATTATTCTCCAGAAATGTTACTTTGACTACATTAAACAGATGTTGACTGATATAGCTGGGAAGTTAGTACCTGTGAACTCTGATATAGACATAAATAAACAAGATATCGCAATGAATGTTGTGTGCCCTTTATGTGAGACACAGCTTGAAAGCGCACAATTATTTCTTAGCCACATGCACAAAATGCATAATGTGAAATCGGTCCCTGGGTATTGTTGTCGACTGTGTGGAATGAACTTTGAAGCCTTTACTGACTTAGAAGCACATCTTGTTGAAGAGTTAGGGGACTTTGATGATTTATGGTTATGTCAGTTCTGCGATAAAGAATTTGGGAACAGAGAGACCACGAGAAAACACTTGTCGGAGCATTGGGAAGCTATAGAGTATGATAACTGTTTTAGTCCACATTTAGGGTTCCGATGCAAGTACTGCCCAACTTTGTTTTGGAatgagacagacagagaaatgCATCAAGTCAGAGTGCACTTTAATAAATACACTGATCAGTTTTACAAGTGTAGTAACTGCAGTATCACATTTAGTGATAAGgtTTGGTACATCCACCATTATTTAGAAAAACATTTGAATGGTGCACAAATGGGCTCTTACCTTCTCAAATGCTGCCTGTGTTGTGTGGTACTTACCACCATCGATGAGATGCGCGCCCACTTCATCAGCAAACACCCGGAAGCGAGGAAGGTGTACTGTTCCTTGGACCCTTGTAAATATAAACCTCTGAGTCACCGCAAGTCTCTCAAGCTACATGTGAAgTGCGTCCACGGCGTAACGCGTGCAGAGAAGCCGGTGTCATGTCCGGTGTGCACGCGCGAGTTCCCCTCGGCGCGCTCGTGCAACGCGCACGCGGCGCAGGTGCACGGCCCGGGCAAGTTCAAGTGCAAGCTGTGCAAGGCGTCGCTGCACACTGTGGACGAGagGAAACTCCACTACCTCCTCATTCACCCCGGGCGGCATCCGTTCGAGTGTTCGGAGTGCGGCAAGTCATTCCAATACAAGTCATCACTGTACATGCATAAACAGGACCACGTACCAAATAAGCAGAGTTACACTTGCACCTACTGCCAGAAGGTGTTCCAGAAAAAGGATTCGTTCCGCGAACACCTTCAAATCCACGAGGGTCCGCGCCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGGCGGCACACCGGCGAGCGGCCCTACGCCTGCTCGCAGTGCCCGCGAACCTTCGCCGACAAGGGCGCGTGCACTTCACACGCCAGAACGCACTCGAAGGAATCTTCTTACGCCTGTCTGTACTGCGGTCAGACGTTTGTGCAGAAATCAAAATTAACCTATCACGTCAGAAAACACACGGGAGAAAATTTAGAGACGTGTACGATCTGTTCAAAGTTATTCACAAGCGCTTGTGCACTGCGTGAACACATGAAGATACACTTGTGCAAGAAAGAGTCTGTCAAGTGTCCGCTATGTGACAAGAAGTATCAAGACGAGCGCTACATGCTCCGCCATCTGCGCACGTCGCACACCCGGTCGCAGTACTCGTGCCCGCTGTGCCAGAAGGTGGTGACTAGCGCGGTGGGGCTGCGCCACCACGTCATCACGCACAGCCCGCTCAACACGTTCCGGTGCAAAGTCTGCCCGAAATCGTACGCTGTGAAACGGACTATAGTGAAGCATTTGCAACGCCGCCACTCCCTCTCGAGCACAGCGGTGAATATCAAGGATTATTACACTCGCTTAGACCCTCGTCAGTGCCAATTAGAGTTGGACGAAGAAACCATGACTAGGGTCTTCGGCCCGCCCAAGAGAAGAGTGACCGACGTACTGATGGGAGACTATGTTACTTACGCTAAGAAGAAGAAGGTGAAAGAAGAAGAACAGAAGGAAGCTGATAGTGATAGTAACTCGGATAATGAGGAGGAGACTCAGCCGCAAGAAGAAGAACAAAGTAGCGGGGAGAGAGAGGAGTTGGAACCAACTGATTTCGTCAGCGTCAAGATTGAACCTATCGATGAGGACGAGGGTATGGAatag
Protein Sequence: MASDESDDEPLSVLAAAKKSNPEKFECEITPVDDKASKKRKSSPSKKSGLTIRINRKLNTITSPPVIDRPLDVWLYLKDLNPTGPYKCLLCADWFINRSKMVVHYVLNHKKDFCGICRYFVNDRESWKSHINFHVPWPCSQCVETFPTDASLRQHLACVHQLVHCRLCHFRVPVGEPYESHLSQKHNVSDIARVDDDSYWEVDMDGMTKFNCSLCSRPNNLTATFFNHYMGFHHFTLKCITNFISGTDPPFTVHGAEISSQFVDGQLKDLTAFGYVDLDSKSAEIIQERFQSCENNDPTKFLDVEIKNENAEYEDIHAKDDEDDSNKTEDQNETLNGYDGDDDFDVTLTEVIILQKCYFDYIKQMLTDIAGKLVPVNSDIDINKQDIAMNVVCPLCETQLESAQLFLSHMHKMHNVKSVPGYCCRLCGMNFEAFTDLEAHLVEELGDFDDLWLCQFCDKEFGNRETTRKHLSEHWEAIEYDNCFSPHLGFRCKYCPTLFWNETDREMHQVRVHFNKYTDQFYKCSNCSITFSDKVWYIHHYLEKHLNGAQMGSYLLKCCLCCVVLTTIDEMRAHFISKHPEARKVYCSLDPCKYKPLSHRKSLKLHVKCVHGVTRAEKPVSCPVCTREFPSARSCNAHAAQVHGPGKFKCKLCKASLHTVDERKLHYLLIHPGRHPFECSECGKSFQYKSSLYMHKQDHVPNKQSYTCTYCQKVFQKKDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACSQCPRTFADKGACTSHARTHSKESSYACLYCGQTFVQKSKLTYHVRKHTGENLETCTICSKLFTSACALREHMKIHLCKKESVKCPLCDKKYQDERYMLRHLRTSHTRSQYSCPLCQKVVTSAVGLRHHVITHSPLNTFRCKVCPKSYAVKRTIVKHLQRRHSLSSTAVNIKDYYTRLDPRQCQLELDEETMTRVFGPPKRRVTDVLMGDYVTYAKKKKVKEEEQKEADSDSNSDNEEETQPQEEEQSSGEREELEPTDFVSVKIEPIDEDEGME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -