Basic Information

Insect: Carterocephalus palaemon
Gene Symbol: -
Assembly: GCA_944567795.1
Location: CALYMS010000070.1:23940-33501[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.00085 0.049 14.2 0.0 2 23 18 40 17 40 0.95

2 22 0.003 0.18 12.5 0.0 1 23 360 383 360 383 0.92

3 22 1.5e-06 8.6e-05 22.9 0.5 1 23 389 411 389 411 0.96

4 22 3.6e-06 0.00021 21.7 0.7 1 23 417 439 417 439 0.98

5 22 5.6e-07 3.2e-05 24.2 5.3 1 23 445 467 445 467 0.99

6 22 4.3e-06 0.00025 21.4 3.4 1 23 473 495 473 495 0.97

7 22 0.3 17 6.2 0.2 7 23 643 659 643 659 0.94

8 22 0.3 17 6.2 0.2 7 23 684 700 684 700 0.94

9 22 0.3 17 6.2 0.2 7 23 807 823 807 823 0.94

10 22 0.3 17 6.2 0.2 7 23 848 864 848 864 0.94

11 22 0.3 17 6.2 0.2 7 23 889 905 889 905 0.94

12 22 4.5 2.6e+02 2.5 0.1 7 23 930 946 930 946 0.93

13 22 0.72 42 5.0 0.1 6 23 970 987 968 987 0.94

14 22 0.72 42 5.0 0.1 6 23 1011 1028 1009 1028 0.94

15 22 0.3 17 6.2 0.2 7 23 1053 1069 1053 1069 0.94

16 22 0.3 17 6.2 0.2 7 23 1094 1110 1094 1110 0.94

17 22 0.3 17 6.2 0.2 7 23 1135 1151 1135 1151 0.94

18 22 4.5 2.6e+02 2.5 0.1 7 23 1176 1192 1176 1192 0.93

19 22 0.3 17 6.2 0.2 7 23 1217 1233 1217 1233 0.94

20 22 0.3 17 6.2 0.2 7 23 1258 1274 1258 1274 0.94

21 22 0.72 42 5.0 0.1 6 23 1298 1315 1296 1315 0.94

22 22 4.5 2.6e+02 2.5 0.1 7 23 1340 1356 1340 1356 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.00085	0.049	14.2	0.0	2	23	18	40	17	40	0.95
2	22	0.003	0.18	12.5	0.0	1	23	360	383	360	383	0.92
3	22	1.5e-06	8.6e-05	22.9	0.5	1	23	389	411	389	411	0.96
4	22	3.6e-06	0.00021	21.7	0.7	1	23	417	439	417	439	0.98
5	22	5.6e-07	3.2e-05	24.2	5.3	1	23	445	467	445	467	0.99
6	22	4.3e-06	0.00025	21.4	3.4	1	23	473	495	473	495	0.97
7	22	0.3	17	6.2	0.2	7	23	643	659	643	659	0.94
8	22	0.3	17	6.2	0.2	7	23	684	700	684	700	0.94
9	22	0.3	17	6.2	0.2	7	23	807	823	807	823	0.94
10	22	0.3	17	6.2	0.2	7	23	848	864	848	864	0.94
11	22	0.3	17	6.2	0.2	7	23	889	905	889	905	0.94
12	22	4.5	2.6e+02	2.5	0.1	7	23	930	946	930	946	0.93
13	22	0.72	42	5.0	0.1	6	23	970	987	968	987	0.94
14	22	0.72	42	5.0	0.1	6	23	1011	1028	1009	1028	0.94
15	22	0.3	17	6.2	0.2	7	23	1053	1069	1053	1069	0.94
16	22	0.3	17	6.2	0.2	7	23	1094	1110	1094	1110	0.94
17	22	0.3	17	6.2	0.2	7	23	1135	1151	1135	1151	0.94
18	22	4.5	2.6e+02	2.5	0.1	7	23	1176	1192	1176	1192	0.93
19	22	0.3	17	6.2	0.2	7	23	1217	1233	1217	1233	0.94
20	22	0.3	17	6.2	0.2	7	23	1258	1274	1258	1274	0.94
21	22	0.72	42	5.0	0.1	6	23	1298	1315	1296	1315	0.94
22	22	4.5	2.6e+02	2.5	0.1	7	23	1340	1356	1340	1356	0.93

Sequence Information

Coding Sequence: ATGATACCAAGTGATAAAATTAAAAAGGAGTGCGAGGAGGAGGACGCGGTGACGTGCAAGGTGTGCGGCAAGGGGTTCGCCAGCGCCGTGGCGCTCGACAACCACGCGCGGCTCGAGCACCTGGAGCAGTACGTCGCCGGGGAGCAGCTGGCCGTGCCCCGCCAGACGCAATCCAAAGCCAAGATCCGGGCAGAAAAGAAAAACCAGATCAAACTGAAGACTCAAGAGCTGATCTCTTCAATGTCCCCCACCAACCTGACCAGCTTCGCGTCGCCCGACGTGAGCTACATCATCATCAAGACGGAGCACGACGAGCACCAGGAGGAGAGGGGGGAGGGACCTGCCAAGGGTGCCAAGAAACGGGAGAGGGCCGAGAAGGGGGCGAAGAAGGATCCGATGCCTATATCGGGGGAGGGACCTGTCAAGGGTGCCAAGAAACGGGAGAGGGCCGAGAAGGGGGCGAAGAAGGATCCGATGCCTATATCCTTCGCGTCGCCCGACGTGAGCTACATCATCATCAAGACGGAGCACGACGAGCACCAGGAGGAGAGGGGGAGGGACCTGCCAAGGGTGCCAAGAAACGGGAGAGGGCCGAGAAGGGGGCGAAGAAGGATCCGATGCCTATATCGTGACTTCGCGTCGCCCGACGTGAGCTACATCATCATCAAGACGGAGCACGACGAGCACCAGGAGGAGAGGGGGGAGGGACCTGTCAAGGGTGCCAAGAAACGGGAGAGGGCCGAGAAGGGGGCGAAGAAGGATCCGATGCCATATATCGTGAGTTTAGCTTCAGTTTATAGCCGTTTTGTGGTCGATGATTGCCAGCTTCGCGTCGCCCGACGTGAGCTACATCATCATCAAGACGGAGCACGACGAGCATCTGGAGGAGAGGGGGGAGGGACCTGTCAAGGGGGCCCGTTCGAGTGCCTGCAGCCGTCGACGCTGGTGGCGGACGGCACGTGCCACCAGATCTTCTTCTCGTGCTGCGAGTACTCGCTGCACCACCGCGACGAGCACACGCGCCGCCGCAAGGGGCTCCGGTGCCAGGTGTGCGAGCGCCCGCTGCTGGCGGAGCCCTACGCCTGCGAGACGTGCGGCATAGGGTTCGAGTCGAGCAGCGCTCTGTCGGAGCACACGTCGGCGGCGCACGCCAAGCTGAAGCCGTACCTGTGCGCGGTGTGCAACAAGCGGTTCACGCAGCAGGGCGGGCTGCAGCAGCACATGCGCATGCACACCGGCGACCGCCCGTACAGCTGCACCTTCTGCCCCAAGGCGTTCACGCAGAAGTCGGGGCTGGACCAGCACCTGCGCATCCACACGAAGGTGCGCCCCTACCGCTGCGTGGTGTGCGGCAAGAGCTTCTGCCAGTCCATCCACCTGAAGCAGCACATGCGGACGCACACCAACGTGGCGCCCTTCCGCTGCGGGCTGTGCGGCAAGCGGTTCAAGCAGAGCAGCCACCTCAACTACCACCTGAAGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCAGCGAGCAGGTGAGGCGGCGGCGAGAGCGGGGCGGCGAGCGGTTCGAGCGGAGCGGCCGCCTCGACTACCACCTGAAGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCGCCTCGACTACCACCTGAAGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCGCCTCGACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCAACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCAACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGCGAGAGCGGGGCGGCGAGCGGTTCGAGCGGAGCGGCCGCCTCGACTACCACCTGAAGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCGCCTCGACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCAACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCAGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCAACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCAACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCGACTACCACCTGAAGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCAGCGAGCAGGTGAGGCGGCGGCGAGAGCGGTGCGGCGAGCGGTTCGAGCGGAGCGGCCGCCTCGACTACCACCTGAAGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCAGCGAGCAGGTGAGGCGGCGGCGAGAGCGGTGCGGCGAGCGGTTCGAGCGGAGCGGCCGCCTCGACTACCACCTGAAGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCAGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCAACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCAGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCAACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCAGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCAACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGgccgcggcgcggcgagcgGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCGACTACCACCTGAAGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCAACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCAGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCAACTACCACCTGAGGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCAGCGAGCAGGTGAGGCGGCGGCGAGAGCGGTGCGGCGAGCGGTTCGAGCGGAGCGGCCGCCTCGACTACCACCTGAAGGGGCACGCGCCCTCGCGCTGCAGGCGGCTGCCGGGGGCCGCGGCCGGCGAGCAGGTGAGGCGGCGGcgagagcggcgcggcgagcggttCGAGCGGAGCGGCCACCTCGACTACCACCTGAAGGGGCACGCGCCctcgcggtcacccatcaagccgaccgcgcccgtcGCTTCAGAGCAAGAAACGCAGGTTATATCATACGGTGGAGAGTTGTATGTACAAGAAGGACATGGGGAAGAATACAGTGAAGTAACGTTCGAAGAAGAAATACAGCAGGAGCAAGATGGAACTGTTGAGGAAGAACAGAGCGTAGAGGAGACTGTCGAAGAAGAATGTGTGATGGTGGACTATGTTGAGGGGAGTGATATTGCTTAA
Protein Sequence: MIPSDKIKKECEEEDAVTCKVCGKGFASAVALDNHARLEHLEQYVAGEQLAVPRQTQSKAKIRAEKKNQIKLKTQELISSMSPTNLTSFASPDVSYIIIKTEHDEHQEERGEGPAKGAKKRERAEKGAKKDPMPISGEGPVKGAKKRERAEKGAKKDPMPISFASPDVSYIIIKTEHDEHQEERGRDLPRVPRNGRGPRRGRRRIRCLYRDFASPDVSYIIIKTEHDEHQEERGEGPVKGAKKRERAEKGAKKDPMPYIVSLASVYSRFVVDDCQLRVARRELHHHQDGARRASGGEGGGTCQGGPFECLQPSTLVADGTCHQIFFSCCEYSLHHRDEHTRRRKGLRCQVCERPLLAEPYACETCGIGFESSSALSEHTSAAHAKLKPYLCAVCNKRFTQQGGLQQHMRMHTGDRPYSCTFCPKAFTQKSGLDQHLRIHTKVRPYRCVVCGKSFCQSIHLKQHMRTHTNVAPFRCGLCGKRFKQSSHLNYHLKGHAPSRCRRLPGAAASEQVRRRRERGGERFERSGRLDYHLKGHAPSRCRRLPGAAAGEQVRRRRERRGERFERSGRLDYHLKGHAPSRCRRLPGAAAGEQVRRRRERRGERFERSGRLDYHLRGHAPSRCRRLPGAAAGEQVRRRRERRGERFERSGHLNYHLRGHAPSRCRRLPGAAAGEQVRRRRERRGERFERSGHLNYHLRGHAPSRCRRLPGAAAGEQVRRRRERGGERFERSGRLDYHLKGHAPSRCRRLPGAAAGEQVRRRRERRGERFERSGRLDYHLRGHAPSRCRRLPGAAAGEQVRRRRERRGERFERSGHLNYHLRGHAPSRCRRLPGAAASEQVRRRRERRGERFERSGHLNYHLRGHAPSRCRRLPGAAAGEQVRRRRERRGERFERSGHLNYHLRGHAPSRCRRLPGAAAGEQVRRRRERRGERFERSGHLDYHLKGHAPSRCRRLPGAAASEQVRRRRERCGERFERSGRLDYHLKGHAPSRCRRLPGAAASEQVRRRRERCGERFERSGRLDYHLKGHAPSRCRRLPGAAASEQVRRRRERRGERFERSGHLNYHLRGHAPSRCRRLPGAAASEQVRRRRERRGERFERSGHLNYHLRGHAPSRCRRLPGAAASEQVRRRRERRGERFERSGHLNYHLRGHAPSRCRRLPGAAARRAVRRRRERRGERFERSGHLDYHLKGHAPSRCRRLPGAAAGEQVRRRRERRGERFERSGHLNYHLRGHAPSRCRRLPGAAASEQVRRRRERRGERFERSGHLNYHLRGHAPSRCRRLPGAAASEQVRRRRERCGERFERSGRLDYHLKGHAPSRCRRLPGAAAGEQVRRRRERRGERFERSGHLDYHLKGHAPSRSPIKPTAPVASEQETQVISYGGELYVQEGHGEEYSEVTFEEEIQQEQDGTVEEEQSVEETVEEECVMVDYVEGSDIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -