Cpal005473.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Carterocephalus palaemon
Gene Symbol
-
Assembly
GCA_944567795.1
Location
CALYMS010000063.1:111636-136766[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 7.3 4.3e+02 1.8 0.4 1 9 187 195 187 209 0.84
2 24 2.2 1.3e+02 3.5 1.3 1 19 265 283 265 284 0.75
3 24 0.012 0.68 10.6 0.5 1 23 296 319 296 319 0.96
4 24 3.1 1.8e+02 3.0 0.1 1 11 332 342 332 345 0.90
5 24 1.7 1e+02 3.8 0.5 3 14 358 369 356 376 0.78
6 24 0.35 20 6.0 0.4 5 21 699 715 698 716 0.93
7 24 0.011 0.64 10.7 2.1 1 23 741 764 741 764 0.94
8 24 0.01 0.6 10.8 0.3 2 23 770 791 769 791 0.97
9 24 1.8 1e+02 3.8 0.3 3 23 814 833 813 833 0.93
10 24 3.5 2.1e+02 2.8 0.1 2 11 938 947 937 950 0.88
11 24 1.9 1.1e+02 3.7 0.1 2 11 995 1004 994 1007 0.88
12 24 0.033 1.9 9.2 0.8 2 23 1052 1073 1051 1073 0.97
13 24 1.7e-06 0.0001 22.7 5.3 1 23 1079 1101 1079 1101 0.99
14 24 0.011 0.65 10.7 2.2 2 20 1107 1125 1106 1127 0.93
15 24 5.6e-06 0.00033 21.1 4.7 1 23 1138 1160 1138 1160 0.98
16 24 0.011 0.65 10.7 2.2 2 20 1166 1184 1165 1186 0.93
17 24 2.1e-06 0.00012 22.4 4.3 1 23 1197 1219 1197 1219 0.99
18 24 0.011 0.65 10.7 2.2 2 20 1225 1243 1224 1245 0.93
19 24 1.7e-06 0.0001 22.7 5.3 1 23 1256 1278 1256 1278 0.99
20 24 0.011 0.65 10.7 2.2 2 20 1284 1302 1283 1304 0.93
21 24 1.7e-06 0.0001 22.7 5.3 1 23 1315 1337 1315 1337 0.99
22 24 0.0033 0.19 12.4 4.1 2 23 1343 1364 1342 1364 0.97
23 24 0.0014 0.083 13.5 0.2 3 23 1372 1393 1370 1393 0.95
24 24 0.011 0.63 10.7 0.0 3 23 1432 1453 1431 1453 0.97

Sequence Information

Coding Sequence
ATGTTGACATATCAAGAGAATCAGTCGGCTGACACAGGATATGACCCTATCAAATACATTGCTACAACCGTGGACCCATCTGATGTTGACAATCAAACTCCTATGGAGTTTTCTGTCATGATTAAAGTAGAAGAATTTGAAGAAACAGATACAACTGTCGCATTACGCAAACCAGTTGAACAAGTCGAAACAACACAGGACCTAACTTCCACTGTTGACGTGGAAGAGTTGAAGAGTGCAGTCAAATCAACTGAAGATGATCCGCAAATTGATTCCAATACAGAGACGGGTAAACCAAATGAATTATGTGATCAGAACCAAGAATTAGAGTTCAAGGAATATATTGCAAATAACTCAATGATACTCAAAGCTGCCGACAGGCTTGCGAAATCTGAGCAAATCCCCGATAGACTGTTGGCTGTGATCGCAAAGAACTATGCGGGCAGGATTCTTGATGAACCGGTCAAAGATCCCAGAGACGTAGTCTTGAGCAGTGCTTTAGAGAAATGGCAGGAGTGGGCTAATGTCTTCCCGGGCGCAAGAGACTCGCCGTTACTCTACAAATGCTACATATGTGGTCAGTCATGGTGGTACTTATATGACTATAGGGAACACATACCTAAACACATGCACCTGTCCACATTCAGTGTGTCATTAGAAGTTGCCGATGACGAATGCTCAATGGTCTGCTTCTTGAAAGATATAGTTTATAATGACATTAAATACCCTGATACGAACTGCTACCGTTGTGGAAGACAAGCAAAAATTCATATGTTTGCAACGTACAGTCCGTACAAATGTTTATATTGTGGTAAGAGGTCGCTGACCTGCACAGAGATGCTTAGGCACGAGGGAGTTTGTAATGAACGCAAGAATACCAGATCGTACAAATGTCGGGTGtgtcttatatttttttattcggaATCAAAGCTAATCCAGCATATAATAAACTTACACCGGGTACGGTCCGACATGGTCGTCCCGTGGGACTCTTACACGTGCGGTATATGCTCCCGAGCCTTCATTCTGCCTAACCTGCACGTGTGTGTGAAAAAGGTGAACAATTATGGATGCAACTTCTGCGGAAGAAGTTTCCAGAAGAAAATTTTTAAGAAGATACACGTGGCAAATTACAATATGCAGGTTGACTGTAGAATATGCAGGAAAACATTAATGTCCAGATGCATGGAGTATACCCACATGGTGCAACATACGGACAGGTTTGCGTTGATGTACAAGTGCACACAATGTATCGAGGGCAGATACTACCCGGATGAGTTTTCAATAATGCATCACACTTCGGTTGTCCATGAGAGGGAGTTTGAAAGGAAATTCAAGTACTTGGAAATGGTAATTTTACCAAAACAGTGCCTGGAAAAGTCTCCAATAAGCAGTGTGCCTACATTGCGAGTTTCAGCTACGGAGCCTCCACCGCTGGTGCCAATAACACCGGTAGAGAAAGCCCGTGTCACTGTGACTTCTAGCACGAGTACTGACACGACTCCTACCACAACCACTGACACGAGTACTGAAACGACTCCTACCATAACCACTGACACGAGTACTGACACGACTTGTACGACTCCCACCACAACCACTGAAGACCTGCCAGTGGTGGTGGTGAAGCAGGAGCCGCCGTGCGACGACCCCGACGGCCTCTGCGTGCTGGACCTGGCGTGCTTGAAGACTGAGATCGAAGTGGAGCACTTCAATAGCTTACAGGATCTTATTACGTTGAAAACGGAGGCGGTAGAAGAGGTGTTCGCGGACGACCTGATTGTGATTGAGAATAAATCCGAGACCGTAGTGGTGACAAGTGACGACAGTGATCAAGGTGACATTAGTGACAACAGTGACAACGGTGACAGCTCTGTttcaagaagaagaagaaagaagggGGAGCGATTGCAGAATTACAAGTGCGGTTGTGGTTTCACCGGGTCGTGCCGGGAGCTAAGAGAGCACCGGAGGATATGCTCCAAGTATCTTCAGAAGAGGCTGAGGAAGGCGCAGACGGTACCAAGCAAAAGAGCGAAAAGCGGTGAGAACTGCCAAGAAAGGAATGGTGATAAAAAAAGTGCAATGTACATATGCAAATGCAAAGAGGAGTTCAGCTCGTCGGGCGCTTACAAGCGGCACCGCAACGGCTGCGGCGTGCACCTGGCGCACCAGCTCAAGGACGCCAAGCGGCAGGCGCTGCACAGGAAGACCATGGCGGTCTACCGCTGCACCAAGTGTGACCGCAGCTACGAGAATATCCAGCAGTACGCCAGGCACTTTTATAAGATACACTCGGTGAGAAGGGACCAGTGCCCGCAATGCTTCGAACAGTTCGACAGCTCCCAGCGGCTGTCCAGCCACATCCAAGTTCACGTCACGAAGAACTACGTGAAGACTCGCTTCCTCAGGAGCTCGCGGCAGACCGCCAAGGGCAACGCTTGCAAGGAATGCCAGGCGCCAGTTGACCAGGCTCATTTATTCAAGCATTGGGAGCAGCACTTGCAGCTGAACCCCCCCGAGCTGGTGGTGAAGGAGGAGCCGCTGGACGAGGAGTGCGAGGGGGAGGGCCAGCTGGTGGTGGACATCGAGTCCCCGAACACGGAGAGCCTGTACTCGCCGGAGGAGATGAAGGATGCGCTGGATTGGCTGCAGACCGTGCTGCAGTACGGGTCGCGACTCAGGAGGAACAGCGCCGTGCGCGCGTGCGTGTTCTGCGCGCGCCGGTTCCAGAGGCAGAACGACTGCAAGCGGCACGTGATCGAGCACCTGCTGGCCGACGCGTACGCCAGGAAGTGCGTCACGCGCGCGCTGCGCTGCCAGATCTGCGGGGAGGAGTTCGTCAAGGGGGACaaGAGGAACAGCGCCGTGCGCGCGTGCGTGTTCTGCGCGCGCCGGTTCCAGAGGCAGAACGACTGCAAGCGGCACGTGATCGAGCACCTGCTGGCCGACGCGTACGCCAGGAAGTGCGTCACGCGCGCGCTGCGCTGCAAGATCTGCGGGGAGGAGTTCGTCAAGGGGGACaaGAGGAACAGCGCCGTGCGCGCGTGCGTGTTCTGCGCGCGCCGGTTCCAGAGGCAGAACGACTGCAAGCGGCACGTGATCGAGCACCTGCTGGCCGACGCGTACGCCAGGAAGTGCGTCACGCGCGCGCTGCGCTGCCAGATCTGCGGGGAGGAGTTCGTCAAGGGGGACaaATACAAGTTCCACATGCGCAAGCACGCCGCCCTGCCGGTGTACCAGTGCACCATCTGCAGCAAGTCCTTCAGCGACAGCTCCAACTTCTGCAAGCACCGCAAGGTGCACAACCTCAACTATCTCAAGTGCGAGCTGTGCGAGAAGAAGTTCTACAACAAGAACTGCTTCGAGAAGCATTTGGAGGTGAGTGTCTCTACCTTCTCCCTCTTTCTCGTCTACCAGTGCACCATCTGCAGCAAGGCCTTCAGCGACAGCTCCAACTTCTGCAAGCACCGCAAGCTGCACAACCTCAACTATCTCAAGTGCGAGCTGTGCGAGAAGAAGTTCTACAACAAGAACTGCTTCGAGAAGCATTTGGAGGTGAGTGTCTCTACCTTCTCCCTCTTTCTCGTCTACCAGTGCACCATCTGCAGCAAGGCCTTCAGCGACAGCTCCAACTTCTGCAAGCACCGCAAGGTGCACAACCTCAACTATCTCAAGTGCGAGCTGTGCGAGAAGAAGTTCTACAACAAGAACTGCTTCGAGAAGCATTTGGAGGTGAGTGTCTCTACCTTCTCCCTCCTTCTCGTCTACCAGTGCACCATCTGCAGCAAGTCATTCAGCGACAGCTCCAACTTCTGCAAGCACCGCAAGGTGCACAACCTCAACTATCTCAAGTGCGAGCTGTGCGAGAAGAAGTTCTACAACAAGAACTGCTTCGAGAAGCATTTGGAGGTGAGTGTCTCTACCTTCTCCCTCCTTCTCGTCTACCAGTGCACCATCTGCAGCAAGTCATTCAGCGACAGCTCCAACTTCTGCAAGCACCGCAAGGTGCACAACCTCAACTATCTCAAGTGCGAGCTGTGCGAGAAGAAGTTCTACAACAAGAACTGCTTCGAGAAGCATTTGGAGATGCACAAAACGACGCAGCCCATCATATGCAAGATCTGTACGAAGGTCCTCTACACGGAGTCTGCGTACAAGAGGCACGTTAGGAATGTCCACGAGAAGAAGAGGTTGAAGTTTCTGTGCACCATCTGTAAGGAGCCATTCTTGCGGCTGAAGGACAAGTGGGACCATATGTGGCTGATCCACAAGGAGCGCGCGTTCGCAGCGGACTGTCCGCTGTGCCCGGCGGGCTTCCGGCGGTTCGCGGACGTGAAGGCGCACGTCCGCAGCGCGCACGACCGCGAGCTGGTGCgcgacggcggcgcgctgctcaCGGTGACGCGGTTCCTGACAGACTAA
Protein Sequence
MLTYQENQSADTGYDPIKYIATTVDPSDVDNQTPMEFSVMIKVEEFEETDTTVALRKPVEQVETTQDLTSTVDVEELKSAVKSTEDDPQIDSNTETGKPNELCDQNQELEFKEYIANNSMILKAADRLAKSEQIPDRLLAVIAKNYAGRILDEPVKDPRDVVLSSALEKWQEWANVFPGARDSPLLYKCYICGQSWWYLYDYREHIPKHMHLSTFSVSLEVADDECSMVCFLKDIVYNDIKYPDTNCYRCGRQAKIHMFATYSPYKCLYCGKRSLTCTEMLRHEGVCNERKNTRSYKCRVCLIFFYSESKLIQHIINLHRVRSDMVVPWDSYTCGICSRAFILPNLHVCVKKVNNYGCNFCGRSFQKKIFKKIHVANYNMQVDCRICRKTLMSRCMEYTHMVQHTDRFALMYKCTQCIEGRYYPDEFSIMHHTSVVHEREFERKFKYLEMVILPKQCLEKSPISSVPTLRVSATEPPPLVPITPVEKARVTVTSSTSTDTTPTTTTDTSTETTPTITTDTSTDTTCTTPTTTTEDLPVVVVKQEPPCDDPDGLCVLDLACLKTEIEVEHFNSLQDLITLKTEAVEEVFADDLIVIENKSETVVVTSDDSDQGDISDNSDNGDSSVSRRRRKKGERLQNYKCGCGFTGSCRELREHRRICSKYLQKRLRKAQTVPSKRAKSGENCQERNGDKKSAMYICKCKEEFSSSGAYKRHRNGCGVHLAHQLKDAKRQALHRKTMAVYRCTKCDRSYENIQQYARHFYKIHSVRRDQCPQCFEQFDSSQRLSSHIQVHVTKNYVKTRFLRSSRQTAKGNACKECQAPVDQAHLFKHWEQHLQLNPPELVVKEEPLDEECEGEGQLVVDIESPNTESLYSPEEMKDALDWLQTVLQYGSRLRRNSAVRACVFCARRFQRQNDCKRHVIEHLLADAYARKCVTRALRCQICGEEFVKGDKRNSAVRACVFCARRFQRQNDCKRHVIEHLLADAYARKCVTRALRCKICGEEFVKGDKRNSAVRACVFCARRFQRQNDCKRHVIEHLLADAYARKCVTRALRCQICGEEFVKGDKYKFHMRKHAALPVYQCTICSKSFSDSSNFCKHRKVHNLNYLKCELCEKKFYNKNCFEKHLEVSVSTFSLFLVYQCTICSKAFSDSSNFCKHRKLHNLNYLKCELCEKKFYNKNCFEKHLEVSVSTFSLFLVYQCTICSKAFSDSSNFCKHRKVHNLNYLKCELCEKKFYNKNCFEKHLEVSVSTFSLLLVYQCTICSKSFSDSSNFCKHRKVHNLNYLKCELCEKKFYNKNCFEKHLEVSVSTFSLLLVYQCTICSKSFSDSSNFCKHRKVHNLNYLKCELCEKKFYNKNCFEKHLEMHKTTQPIICKICTKVLYTESAYKRHVRNVHEKKRLKFLCTICKEPFLRLKDKWDHMWLIHKERAFAADCPLCPAGFRRFADVKAHVRSAHDRELVRDGGALLTVTRFLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-