Basic Information

Insect: Carterocephalus palaemon
Gene Symbol: -
Assembly: GCA_944567795.1
Location: CALYMS010000006.1:1263141-1269680[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.061 3.6 8.4 0.1 3 23 93 115 92 115 0.92

2 15 0.015 0.86 10.3 0.3 1 23 129 153 129 153 0.97

3 15 7.3 4.3e+02 1.8 2.3 2 23 193 216 192 216 0.89

4 15 0.00098 0.057 14.0 0.2 3 23 225 247 224 247 0.94

5 15 0.01 0.59 10.8 0.5 3 20 255 272 253 274 0.91

6 15 0.00098 0.057 14.0 0.2 3 23 300 322 299 322 0.94

7 15 0.01 0.59 10.8 0.5 3 20 330 347 328 349 0.91

8 15 0.00098 0.057 14.0 0.2 3 23 375 397 374 397 0.94

9 15 0.01 0.59 10.8 0.5 3 20 405 422 403 424 0.91

10 15 0.00098 0.057 14.0 0.2 3 23 450 472 449 472 0.94

11 15 0.01 0.59 10.8 0.5 3 20 480 497 478 499 0.91

12 15 0.00098 0.057 14.0 0.2 3 23 525 547 524 547 0.94

13 15 0.01 0.59 10.8 0.5 3 20 555 572 553 574 0.91

14 15 0.00098 0.057 14.0 0.2 3 23 600 622 599 622 0.94

15 15 0.01 0.59 10.8 0.5 3 20 630 647 628 649 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.061	3.6	8.4	0.1	3	23	93	115	92	115	0.92
2	15	0.015	0.86	10.3	0.3	1	23	129	153	129	153	0.97
3	15	7.3	4.3e+02	1.8	2.3	2	23	193	216	192	216	0.89
4	15	0.00098	0.057	14.0	0.2	3	23	225	247	224	247	0.94
5	15	0.01	0.59	10.8	0.5	3	20	255	272	253	274	0.91
6	15	0.00098	0.057	14.0	0.2	3	23	300	322	299	322	0.94
7	15	0.01	0.59	10.8	0.5	3	20	330	347	328	349	0.91
8	15	0.00098	0.057	14.0	0.2	3	23	375	397	374	397	0.94
9	15	0.01	0.59	10.8	0.5	3	20	405	422	403	424	0.91
10	15	0.00098	0.057	14.0	0.2	3	23	450	472	449	472	0.94
11	15	0.01	0.59	10.8	0.5	3	20	480	497	478	499	0.91
12	15	0.00098	0.057	14.0	0.2	3	23	525	547	524	547	0.94
13	15	0.01	0.59	10.8	0.5	3	20	555	572	553	574	0.91
14	15	0.00098	0.057	14.0	0.2	3	23	600	622	599	622	0.94
15	15	0.01	0.59	10.8	0.5	3	20	630	647	628	649	0.91

Sequence Information

Coding Sequence: ATGGCGGGAGATGAAGATCAGGCGCCAGGaccaaaaaataaatttcttcGCTGCTTGGACTGGCTTCAGAAACAGAACGAATTAGAGCCAAAGAAATTGTCACTGCAAAACCAGAATGATATACAGTTTATTATTGAATGTAATGCGCAACGAAAAAATTTCTTCCTCTCGGTTCCAAAAGAAGACTTAACGGTTCCTGCTGGTGTAGACGAGCCTAATGTGAAACCCATGAAAGTGCCAGTACGCCGATTACGCGTGGACAATCTCTTGATGCTGTGCGAGTGGTTGGACTGCCAGCAATACTTCACAGACTATGAGCTCTTTCAGAAGCATGTTGCCGAACACATACCAGAAAGAGTTAATGAACCGGATGATGTTTtCCAATACATCTGCAAATGGGACATATGCGGGCACAAGACGTCGGATTATGGCGAAATAGCTCGTCACATAAACTACCACGCGTATCACGCTAAGCTATTAGCGATTGGGTTCAACGGTCGCGCTACTCTCAACCTGGAGAGGTGCAAGAAGGACTCCAGCAAGCGGAACACATTGCCGAGCCTGAAGGCTGAACACTGTTGCATGTGGATCGGGTGTACCGCAAGATACAACTCTATACAGGCGTTCTTCGACCACATAAAACGGCACATCCTCCTCACGGACGGCAACATGTGCTCGTGGGGCGGGTGCGGCGCGCGCTTCACCCGGCGCGTGATGCTcacgctgcacgcgcgccggcACTCGGGCGAGCGGCTCATCGCGTGCTACCACTGCGGCCGGCACTTCGCGACCAACAGGAAGCTGGGCGACCATCTGGCCAGGCAGGAAGCTGGGCGACCATCTGGCCAGGCAGGTCCGTGCATCACCAGTATCATCCTCCTCGCGGACGGCAACATGTGCTCGTGGGGCGGGTGCGGCGCGCGCTTCACCCGGCGCGTGATGCTcacgctgcacgcgcgccggcACTCGGGCGAGCGGCTCATCGCGTGCTACCACTGCGGCCGGCACTTCGCGACCAACAGGAAGCTGGGCGACCATCTGGCCAGGCAGGAAGCTGGGCGACCATCTGGCCAGGCAGGTCCGTGCATCACCAGTATCATCCTCCTCGCGGACGGCAACATGTGCTCGTGGGGCGGGTGCGGCGCGCGCTTCACCCGGCGCGTGATGCTcacgctgcacgcgcgccggcACTCGGGCGAGCGGCTCATCGCGTGCTACCACTGCGGCCGGCACTTCGCGACCAACAGGAAGCTGGGCGACCATCTGGCCAGGCAGGAAGCTGGGCGACCATCTGGCCAGGCAGGTCCGTGCATCACCAGTATCATCCTCCTCGCGGACGGCAACATGTGCTCGTGGGGCGGGTGCGGCGCGCGCTTCACCCGGCGCGTGATGCTcacgctgcacgcgcgccggcACTCGGGCGAGCGGCTCATCGCGTGCTACCACTGCGGCCGGCACTTCGCGACCAACAGGAAGCTGGGCGACCATCTGGCCAGGCAGGAAGCTGGGCGACCATCTGGCCAGGCAGGTCCGTGCATCACCAGTATCATCCTCCTCGCGGACGGCAACATGTGCTCGTGGGGCGGGTGCGGCGCGCGCTTCACCCGGCGCGTGATGCTcacgctgcacgcgcgccggcACTCGGGCGAGCGGCTCATCGCGTGCTACCACTGCGGCCGGCACTTCGCGACCAACAGGAAGCTGGGCGACCATCTGGCCAGGCAGGAAGCTGGGCGACCATCTGGCCAGGCAGGTCCGTGCATCACCAGTATCATCCTCCTCGCGGACGGCAACATGTGCTCGTGGGGCGGGTGCGGCGCGCGCTTCACCCGGCGCGTGATGCTcacgctgcacgcgcgccggcACTCGGGCGAGCGGCTCATCGCGTGCTACCACTGCGGCCGGCACTTCGCGACCAACAGGAAGCTGGGCGACCATCTGGCCAGGCAGGTCCGTGCATCACCAGTATCATCCTCCTCGCGGACGGCAACATGTGCTCGTGGGGCGGGTGCGGCGCGCGCTTCACCCGGCGCGTGA
Protein Sequence: MAGDEDQAPGPKNKFLRCLDWLQKQNELEPKKLSLQNQNDIQFIIECNAQRKNFFLSVPKEDLTVPAGVDEPNVKPMKVPVRRLRVDNLLMLCEWLDCQQYFTDYELFQKHVAEHIPERVNEPDDVFQYICKWDICGHKTSDYGEIARHINYHAYHAKLLAIGFNGRATLNLERCKKDSSKRNTLPSLKAEHCCMWIGCTARYNSIQAFFDHIKRHILLTDGNMCSWGGCGARFTRRVMLTLHARRHSGERLIACYHCGRHFATNRKLGDHLARQEAGRPSGQAGPCITSIILLADGNMCSWGGCGARFTRRVMLTLHARRHSGERLIACYHCGRHFATNRKLGDHLARQEAGRPSGQAGPCITSIILLADGNMCSWGGCGARFTRRVMLTLHARRHSGERLIACYHCGRHFATNRKLGDHLARQEAGRPSGQAGPCITSIILLADGNMCSWGGCGARFTRRVMLTLHARRHSGERLIACYHCGRHFATNRKLGDHLARQEAGRPSGQAGPCITSIILLADGNMCSWGGCGARFTRRVMLTLHARRHSGERLIACYHCGRHFATNRKLGDHLARQEAGRPSGQAGPCITSIILLADGNMCSWGGCGARFTRRVMLTLHARRHSGERLIACYHCGRHFATNRKLGDHLARQVRASPVSSSSRTATCARGAGAARASPGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -