Cpal007867.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000100.1:639598-680164[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 2.3 1.3e+02 3.4 6.8 1 23 313 336 313 336 0.97 2 33 0.81 47 4.8 6.7 1 23 367 390 367 390 0.94 3 33 0.06 3.5 8.4 0.1 2 23 395 417 394 417 0.95 4 33 0.21 12 6.7 3.1 1 19 429 447 429 452 0.92 5 33 0.0052 0.3 11.7 0.6 2 23 519 540 518 540 0.95 6 33 1.8e-05 0.0011 19.5 3.0 1 23 572 594 572 594 0.98 7 33 0.035 2 9.1 3.6 1 23 600 623 600 623 0.95 8 33 1.2 68 4.4 3.2 2 23 946 967 945 967 0.93 9 33 0.0053 0.31 11.7 1.0 1 23 1000 1023 1000 1023 0.95 10 33 0.0053 0.31 11.7 1.0 1 23 1044 1067 1044 1067 0.95 11 33 0.0053 0.31 11.7 1.0 1 23 1088 1111 1088 1111 0.95 12 33 0.0053 0.31 11.7 1.0 1 23 1132 1155 1132 1155 0.95 13 33 0.066 3.9 8.3 7.3 1 23 1167 1190 1167 1190 0.95 14 33 0.11 6.6 7.5 0.5 1 23 1234 1257 1234 1257 0.97 15 33 0.18 11 6.9 0.6 2 16 1275 1289 1274 1291 0.83 16 33 0.18 11 6.9 0.6 2 16 1309 1323 1308 1325 0.83 17 33 0.18 11 6.9 0.6 2 16 1343 1357 1342 1359 0.83 18 33 0.18 11 6.9 0.6 2 16 1377 1391 1376 1393 0.83 19 33 0.18 11 6.9 0.6 2 16 1411 1425 1410 1427 0.83 20 33 0.18 11 6.9 0.6 2 16 1445 1459 1444 1461 0.83 21 33 0.18 11 6.9 0.6 2 16 1479 1493 1478 1495 0.83 22 33 0.18 11 6.9 0.6 2 16 1513 1527 1512 1529 0.83 23 33 0.18 11 6.9 0.6 2 16 1547 1561 1546 1563 0.83 24 33 0.18 11 6.9 0.6 2 16 1581 1595 1580 1597 0.83 25 33 5.4e-06 0.00032 21.1 4.0 2 23 1615 1636 1614 1636 0.95 26 33 0.00014 0.0082 16.7 0.3 1 23 1642 1664 1642 1664 0.97 27 33 9.7e-06 0.00057 20.3 1.2 1 23 1671 1693 1671 1693 0.98 28 33 8.4e-06 0.00049 20.5 1.9 1 23 1699 1722 1699 1722 0.97 29 33 1.2 70 4.3 0.1 5 23 1744 1763 1742 1763 0.93 30 33 1.2 70 4.3 0.1 5 23 1785 1804 1783 1804 0.93 31 33 1.2 70 4.3 0.1 5 23 1826 1845 1824 1845 0.93 32 33 1.2 70 4.3 0.1 5 23 1867 1886 1865 1886 0.93 33 33 6.3 3.7e+02 2.0 0.0 5 21 1909 1925 1907 1926 0.92
Sequence Information
- Coding Sequence
- ATGTTTGATATGATGGACCAAGATCGGAAAGATCAGTATGTACAAGTCACTGGGTTGAATATTGAGCCCACGTACCCAGAGTTCATCTGCTGGGAGTGCGCACACCACCTGGCCGCGTGCCACCGGTACCGGACGCGTGCCAGGCTGGCCCACTGCTTGTTGGGAGATTTGCTGAAGGCAGATGGATACATTTCagaagaaaatataattaagatCAATAGACAACAATATGGTCTGGAATCAAGGCTTTTCATGAACTCTGCTATTTATTTTAGCGTTGAAGATACAAGTAACAATATTAAACCGAATGAAGTGTTTGCTAATAATCTTGATGCAAGGTTAATAAGAAAAGAGTCTGAAAAGACTGAAACTGAAAAGAGTCAACTGTTGACCATTGAATTAAGTGATGATGAGTCAACTTCAAATACAAGTTGGTCTTCACACGAAGGTTTAGACAATGatgaagaggaagaaatttatGTTGCAAATGCACCAGTAGAAGAAAACCATCTAGATATTATAAAGACAGAGCCAATAGACCTGGAACAGACACattcatttgaaataaataatttatcggAAGATAGCATAGATAAGAATGATATCGAAAGCACTTCATCAATTAAAGAAGCAAACAAGACTGATAAAACTACTGAATGGTATGCAGTTAACAGCTTGAAAGGAAATAATTCAGAAGGACCAAAGGATAAAATGTCAAACATGAAGACACCAGCCATAAACAAGGATAAATTTGACGAATCCATAATGACTGTGACTGAAATGAGTTTAGACGAAGAATTGCAGAACTTCGAGAATAGAAAGCAATCTGATAACTATAGGCTAAGTCCGTTCAAATGCGAAATCTGTTTTAAGGGACATCTTAGAGAGGAAGCATTTAAAGTCCACTCCTTAAAGCATTCTCCTGAGAACGGCAAGTTCGAGTGCCTGGTGTGCAAGTTCCGGTTCCGCAGGCGCACGGACTGCCGCCACCACGTGCTGACGACCCACTTCTACAGGTTCAGCTGCAGGGTGTGCCCCTACGTCAGCACGTCGCTAACACGGTCGACCTCCCATCATGACAGTCACAAGGGCATCACACACCGGTGTCCACATTGTGACATGACCTTTTCGAAGATGACGTCTTGCCTGACCCACGTCCGCGTGAAGCACCCCTCGGACATCGTGTGCGGGCTGTGCGGGAACAGCTTCGTCAGCGGCAAGGGGCTGGAGCTGCACAGGAGGCTCAAGCACCGCTACGAAGACCAGCCGGTATCCAAAGGGGAGCATCcgtgtgacaactgtgacttgaAGTTCGCTACACAGAAGGCCCTATACACGCACTGCTACGTCAGTCACGGCGTCAGTATACCAAAAGAAGTACGGAAGCAGCTGAAACTGATCAAGCCGAGACGCGACCCGAACATGGCCATACAGTGCGAACAGTGCGATGCGACGTTGCTGGGCTTGAGGCGGTACGCGGCGCACTTCAAGCAGTTCCACCCCGACAAGAAACGAGCCTACAACCCGTCCACGCCGTACAAGAACCAGCAGTGCATGTGCGAGGCTTGCGGCCGGGTATTCTCCAATCCCAACGCGCTGCGTTTCCATATGGAAAGCCACACGGAGGGCCAGAAGCGCACAAGCAGACGCCGCAAAGCCTCCCCGACGGCAACGGAACAACACTTAGCCTCACGCGCGGACCAGCCCCGCGCTTTTAAGTGTGACATATGCGGCTCGACTTATACCACCAAATGCAACCTGAAGCGACACATTCAGGGCCACTCCCAACAGCCGGAGCACGAGTGCGCGGCGTGCGACAAGCGGTTCCCGTACCGCTGCCTGCTGCTGGCGCACCAGCGGCACGCGCACCTCGGCCTGCCCTGGCCGAGGAGGACGCGGCCCAGGCGCCCTGGCAAGATATGCCGGGTATGCTTGGCCACCGATGAGAAGATGTTCAGCTTGCGAGATGATCACCGCGCAGCCCAGTACGAACAGGTCACTGGTTTGAATgtAGGGCACGATGATCAAATTCCTTTAGCCCTGTGCTGGGAGTGCGCACACCGATTGGCCGCATGCTACAAGTTCAGGGCGCGCGCCAGGCTGGCCCACTGCTTAATGGAAGACTTGCTGCGGAGCAATCCGAGTATAACAGAGgaaaatataagtaatatagACAGGAAGAAATTAGGCCTTGACACAAAACtggtacaaataaatataacgccggattattttgatttaaaagtgGAGGAAGATGAAGATGAAATTGCTGCAGCCATCACTGCCATCACTGAAGACTGGGAAACGAAAGGCACTGAGACGGAGACACTTGTTAAAGTAGAGCCAAAAAATGAACCAGACGAGACATACATGGAAATAGAAACACTCAGTGAGACAGAAACACACGATGATGCAGAAACACACTATAAGACAGAAACACACAATGATACAGAGGCAGATTTCGGAGACGATACGAACGCATTGGTGATTGATACAGATGATAAAAAATCTTTAGACGAAGACAACGGAGAATTGAAAATTGACACAGAGGAAGTCGATAGTGAAAAAAGAGATACAAATGTAAAAGATAATCATACGATTAAAAGTGATTCAAACGATGAAAAATCTCACATGGGTTTATTAGCGTTGAGCAAGAAAATCTTCGAAGTAGTGAATTTGAATGACGAAGAGCAATTGGTGGAATTTGAAAAGAGAAAAGAACTGACAACGTATCAGGCTGCCAAATATAAATGTGAGCTGTGCTACAGGGGATACATGGATGATGATGCTTATAAATTTCATAAGCTTTTACATACAGATCTAAACGGATTGGTGGAATGCAGTCTGTGCAAGATGCGTTTCAGTAGTAAAAATAGTTGCAGGAAACACGAAGTGATGCATCTTTATTTATACAAGTGTAAGCTGTGCGAATTCGTCGCTCAAACTAGTAGGGAGACAACGTACCTGAACCACGTGCGCAAGAAACACCCGTGCTCGCACGTGTGCACGCGCTGCGGGCTGTCCTTCGTGGGCAAGAAGGGGCTGGAGCAGCACTGGTCGAGGAAGCACCGCTTCGACGACCCCGCGACAACGTACCTGAACCACGTGCGCAAGAAACACCCGTGCTCGCACGTGTGCACGCGCTGCGGGCTGTCCTTCGTGGGCAAGAAGGGGCTGGAGCAGCACTGGTCGAGGAAGCACCGCTTCGACGACCCCGCGACAACGTACCTGAACCACGTGCGCAAGAAACACCCGTGCTCGCACGTGTGCACGCGCTGCGGGCTGTCCTTCGTGGGCAAGAAGGGGCTGGAGCAGCACTGGTCGAGGAAGCACCGCTTCGACGACCCCGCGACAACGTACCTGAACCACGTGCGCAAGAAACACCCGTGCTCGCACGTGTGCACGCGCTGCGGGCTGTCCTTCGTGGGCAAGAAGGGGCTGGAGCAGCACTGGTCGAGGAAGCACCGCTTCGACGACCCCGCGGAACCAACAGAAGAGCACCCGTGCTCGTATTGCGACCTCAAGTTTGAATCCACATCGGCCCTGCATCATCACATATGCAATTATCACCCTGAGGAAGCCGGGCCAGAGGTGCGTAGGACGGTGAAGGCGGCGGAGAGCAAGCGGAAAAAGGCGTACGTGAAGAACTATCTGGACGCGTACAGGAGCAGGAGGGGGCGGTACACGCCCAAGGAACCTTTCCAGTGCGAACAGTGCGATGTGGTGCTGAAGGGCGCGCGGGAGTACTTCTCGCACTTCCGGCGCGAGCACCGCGACAAGAACCGCACCTACTTCCCCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCCGTGAGTGTTGCCTTCCAGCAATATGACAAGAACCGCACCTACTTCCCCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCCGTGAGTGTTGCCTTCCAGCAATATGACAAGAACCGCACCTACTTCCGCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCCGTGAGTGTTGCCTTCCAGCAATATGACAAGAACCGCACCTACTTCCCCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCCGTGAGTGTTGCCTTCCAGCAATATGACAAGAACCGCACCTACTTCCCCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCTGTAAGTGTTGCCTTCCAGCAATATGACAAGAACCGCACCTACTTCCCCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCCGTGAGTGTTGCCTTCCAGCAATATGACAAGAACCGCACCTACTTCCCCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCCGTGAGTGTTGCCTTCCAGCAATATGACAAGAACCGCACCTACTTCCCCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCTGTAAGTGTTGCCTTCCAGCAATATGACAAGAACCGCACCTACTTCCCCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCCGTGAGTGTTGCCTTCCAGCAATATGACAAGAACCGCACCTACTTCCCCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCCGTGAGTGTTGCCTTCCAGCAATATGACAAGAACCGCACCTACTTCCCCGTGCGGCACCCGGGGCTCGAGTGCATGTGCGAGCTGTGCGGGAAGACCTTCTCCGACCCCCACCATCTGAACGCACACATGGACTCGCACGCGCCGGAGAAGCGGTACGCGTGCGAGCTGTGCGGCCGCCGGTTCCAGCAGCGGTTCGGCCTGATACAACACATGGTGACCCACTCGGAAAACCGGCCGCGCTACCCGTGCGAGTACTGCGGGAAGACCTTCGTCTTGTCCTCCAACAGAAACCGGCACATGTTTAGTCATACGGGGGAGAAGCCGTATAAATGCGGCACGTGCGGCAAGGTGTTCGCGTACAAGAACAACCTGCAGCAGCACGAGCGGCACGTGCACGCCAACGAGCCGTGGCCGATGCgcgtgcgcggccgccgccgcccgcccgccccgGAGGAGGTAACGTGCGGCGAGGTGTCGGCGTACGAGAACAACCTGCGGCAGCACGAGCGGCACGTGCACGCCAACGAGCCGTGGCCGATGCgcgtgcgcggccgccgccgcccgcccgccccgGAGGAGGTAACGTGCGGCGAGGTGTCGGCGTACGAGAACAACCTGCGGCAGCACGAGCGGCACGTGCACGCCAACGAGCCGTGGCCGATGCgcgtgcgcggccgccgccgcccgcccgccccgGAGGAGGTAACGTGCGGCGAGGTGTCGGCGTACGAGAACAACCTGCGGCAGCACGAGCGGCACGTGCACGCCAACGAGCCGTGGCCGATGCgcgtgcgcggccgccgccgcccgcccgccccgGAGGAGGTAACGTGCGGCGAGGTGTCGGCGTACGAGAACAACCTGCGGCAGCACGAGCGGCACGTGCACGCCAACGAGCCGTGGCCGATGCgcgtgcgcggccgccgcgcgcgcccgcccgccccgGAGGAGGTAACGTGCGGCGAGGTGTCGGCGTACGAGAACAATCTGCGGCAGCACGAGCGACATTCCCGACCCTCGAAAAATATTGGGGTTCCCTAG
- Protein Sequence
- MFDMMDQDRKDQYVQVTGLNIEPTYPEFICWECAHHLAACHRYRTRARLAHCLLGDLLKADGYISEENIIKINRQQYGLESRLFMNSAIYFSVEDTSNNIKPNEVFANNLDARLIRKESEKTETEKSQLLTIELSDDESTSNTSWSSHEGLDNDEEEEIYVANAPVEENHLDIIKTEPIDLEQTHSFEINNLSEDSIDKNDIESTSSIKEANKTDKTTEWYAVNSLKGNNSEGPKDKMSNMKTPAINKDKFDESIMTVTEMSLDEELQNFENRKQSDNYRLSPFKCEICFKGHLREEAFKVHSLKHSPENGKFECLVCKFRFRRRTDCRHHVLTTHFYRFSCRVCPYVSTSLTRSTSHHDSHKGITHRCPHCDMTFSKMTSCLTHVRVKHPSDIVCGLCGNSFVSGKGLELHRRLKHRYEDQPVSKGEHPCDNCDLKFATQKALYTHCYVSHGVSIPKEVRKQLKLIKPRRDPNMAIQCEQCDATLLGLRRYAAHFKQFHPDKKRAYNPSTPYKNQQCMCEACGRVFSNPNALRFHMESHTEGQKRTSRRRKASPTATEQHLASRADQPRAFKCDICGSTYTTKCNLKRHIQGHSQQPEHECAACDKRFPYRCLLLAHQRHAHLGLPWPRRTRPRRPGKICRVCLATDEKMFSLRDDHRAAQYEQVTGLNVGHDDQIPLALCWECAHRLAACYKFRARARLAHCLMEDLLRSNPSITEENISNIDRKKLGLDTKLVQINITPDYFDLKVEEDEDEIAAAITAITEDWETKGTETETLVKVEPKNEPDETYMEIETLSETETHDDAETHYKTETHNDTEADFGDDTNALVIDTDDKKSLDEDNGELKIDTEEVDSEKRDTNVKDNHTIKSDSNDEKSHMGLLALSKKIFEVVNLNDEEQLVEFEKRKELTTYQAAKYKCELCYRGYMDDDAYKFHKLLHTDLNGLVECSLCKMRFSSKNSCRKHEVMHLYLYKCKLCEFVAQTSRETTYLNHVRKKHPCSHVCTRCGLSFVGKKGLEQHWSRKHRFDDPATTYLNHVRKKHPCSHVCTRCGLSFVGKKGLEQHWSRKHRFDDPATTYLNHVRKKHPCSHVCTRCGLSFVGKKGLEQHWSRKHRFDDPATTYLNHVRKKHPCSHVCTRCGLSFVGKKGLEQHWSRKHRFDDPAEPTEEHPCSYCDLKFESTSALHHHICNYHPEEAGPEVRRTVKAAESKRKKAYVKNYLDAYRSRRGRYTPKEPFQCEQCDVVLKGAREYFSHFRREHRDKNRTYFPVRHPGLECMCELCGKTFSVSVAFQQYDKNRTYFPVRHPGLECMCELCGKTFSVSVAFQQYDKNRTYFRVRHPGLECMCELCGKTFSVSVAFQQYDKNRTYFPVRHPGLECMCELCGKTFSVSVAFQQYDKNRTYFPVRHPGLECMCELCGKTFSVSVAFQQYDKNRTYFPVRHPGLECMCELCGKTFSVSVAFQQYDKNRTYFPVRHPGLECMCELCGKTFSVSVAFQQYDKNRTYFPVRHPGLECMCELCGKTFSVSVAFQQYDKNRTYFPVRHPGLECMCELCGKTFSVSVAFQQYDKNRTYFPVRHPGLECMCELCGKTFSVSVAFQQYDKNRTYFPVRHPGLECMCELCGKTFSDPHHLNAHMDSHAPEKRYACELCGRRFQQRFGLIQHMVTHSENRPRYPCEYCGKTFVLSSNRNRHMFSHTGEKPYKCGTCGKVFAYKNNLQQHERHVHANEPWPMRVRGRRRPPAPEEVTCGEVSAYENNLRQHERHVHANEPWPMRVRGRRRPPAPEEVTCGEVSAYENNLRQHERHVHANEPWPMRVRGRRRPPAPEEVTCGEVSAYENNLRQHERHVHANEPWPMRVRGRRRPPAPEEVTCGEVSAYENNLRQHERHVHANEPWPMRVRGRRARPPAPEEVTCGEVSAYENNLRQHERHSRPSKNIGVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -