Cpal012243.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000167.1:146237-169077[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 8.9e-05 0.0052 17.3 1.7 2 23 341 363 341 363 0.96 2 34 0.0014 0.08 13.6 0.3 1 23 369 391 369 391 0.98 3 34 0.013 0.74 10.5 0.3 2 22 400 420 399 424 0.92 4 34 4.9e-05 0.0028 18.1 0.3 1 23 432 455 432 455 0.93 5 34 0.57 34 5.3 4.7 1 23 461 484 461 484 0.97 6 34 0.00071 0.041 14.5 0.6 3 23 494 515 493 515 0.91 7 34 0.079 4.6 8.0 1.3 1 23 521 544 521 544 0.96 8 34 0.079 4.6 8.0 1.3 1 23 557 580 557 580 0.96 9 34 0.079 4.6 8.0 1.3 1 23 593 616 593 616 0.96 10 34 0.079 4.6 8.0 1.3 1 23 629 652 629 652 0.96 11 34 0.079 4.6 8.0 1.3 1 23 665 688 665 688 0.96 12 34 0.079 4.6 8.0 1.3 1 23 701 724 701 724 0.96 13 34 0.079 4.6 8.0 1.3 1 23 737 760 737 760 0.96 14 34 0.079 4.6 8.0 1.3 1 23 773 796 773 796 0.96 15 34 0.079 4.6 8.0 1.3 1 23 809 832 809 832 0.96 16 34 0.079 4.6 8.0 1.3 1 23 845 868 845 868 0.96 17 34 0.079 4.6 8.0 1.3 1 23 881 904 881 904 0.96 18 34 0.079 4.6 8.0 1.3 1 23 917 940 917 940 0.96 19 34 0.079 4.6 8.0 1.3 1 23 953 976 953 976 0.96 20 34 0.079 4.6 8.0 1.3 1 23 989 1012 989 1012 0.96 21 34 0.079 4.6 8.0 1.3 1 23 1025 1048 1025 1048 0.96 22 34 0.079 4.6 8.0 1.3 1 23 1061 1084 1061 1084 0.96 23 34 0.079 4.6 8.0 1.3 1 23 1097 1120 1097 1120 0.96 24 34 0.079 4.6 8.0 1.3 1 23 1133 1156 1133 1156 0.96 25 34 0.079 4.6 8.0 1.3 1 23 1169 1192 1169 1192 0.96 26 34 0.079 4.6 8.0 1.3 1 23 1205 1228 1205 1228 0.96 27 34 0.079 4.6 8.0 1.3 1 23 1241 1264 1241 1264 0.96 28 34 0.079 4.6 8.0 1.3 1 23 1277 1300 1277 1300 0.96 29 34 0.079 4.6 8.0 1.3 1 23 1313 1336 1313 1336 0.96 30 34 0.079 4.6 8.0 1.3 1 23 1349 1372 1349 1372 0.96 31 34 0.079 4.6 8.0 1.3 1 23 1385 1408 1385 1408 0.96 32 34 0.079 4.6 8.0 1.3 1 23 1421 1444 1421 1444 0.96 33 34 0.079 4.6 8.0 1.3 1 23 1457 1480 1457 1480 0.96 34 34 0.079 4.6 8.0 1.3 1 23 1493 1516 1493 1516 0.96
Sequence Information
- Coding Sequence
- ATGGCCTTGGAAATGGAAGCGTTGTGTACAACGTGTCTGAATTCGGGCCGAAATCTCTATGTACTGGCCGACACAGAATTATTTAGAATTTACGAacaaattttgaatgaaatatCGGCGTCCCAGTGTGAGGGGTCGGTGTTGGTCCGTGTGTGCTGGGAGTGCCGCGCCATACTGCGCCGCTTCCAGCGCTTCAAGGTGCAAGCGCAGGGCTGCTACAGGGAACTGCTGCGACACGCACATCAgCAAACCTCTAGCCTCCGAAGGCCGGAACGGATCAGTCTTCAAGTCCATCAGGTCCACACCTCCAGCTACTCGGTAGTCAAGGAGGAGCCAGACTCGCTCAGCCTGGATAACGATGGGCACGAGGAGCTGGAGACCGTCGCGTACGACCTGGTGCTAGACAAGGACACCGATATGATAAATGGACAGACTAGGAAGAGTATGCAGACACACAAGACGAAGGTAAAGAAAAAGGTGAAGTTAAAAAAGGGGAGAGCGAGGAGGGGGACCCAGCTCCCCCCGGGGCCCCCGTCGGACGGGGGGAGCGACGGGGGGCTGAGCGGGGACTGCTACGAGCTCGAGGAGATGCGGGCTGACATCAAAAATGAGGTCCGATATTCACCGACACCTATTGATTCTTCGCCACGAGCTCGCTCGGTGAAGCAGGAGGCCACGGAGCAGCCCGACGTGAAGACCGAGAGGGATGAGGTGCACGAGGAGCCGGAGACGGTGGCCTACGACCTGGCGGTAGACAAGGACGGGGATACGGACAGCAAGGGAGATAGGCAgACACAAAAGACAAAAGTGAAGAAAAaggtgaagttaaaaaaaagcaaGAGTCGGAAGGAGAAGCCGCAGGTCCCCCAGGGGTCGCCGGGGGTCCCGGGGGACCCACCCTGGGGTCCCCCGCCGGACGGGGCCGAGGTGGGGGGCGCTGATGTTAAACTCGGGCCGGGAGGTGGGACGGCGaagggcgggcggcgcgcgcgcagccgcgaGGCGCTGCCCGAGCGGCCCACGTGCGCCGACTGCGGGAAGACCTTCAGCTCCAGGAAGACCTTCCGCTACCACCGCAACGTGCTGCACAAGGGCCAGAACCGCTACCCGTGCCCGCGCTGCGCGCGCGTCTACCAGTGGAAGTCGAACCTGGGACGCCACATGCGCACGCACAAGGCGCGGGACACCGGCGAGCTGTACTGCGAGGCCTGCGACAAGAGCTTCGCCTCGGTGGCCACGTACCGCCAGCACCTGCGCGTCTCGCGCAAGCACGTGCCCGAGACAGACTACAGTTTCATGTGCAACGAGTGCGGAAAGAAATTCGTGGATAAGACCAGACTGAGAGACCACATAGACTGGGAGCACCTGAAGAAGATCAAGTACCGCTGCCAGATCTGCAACAACGCGTTCAAGTGCCACACGACGCTGTACGTGCACATGCAGAACATCCACACGAACAAGGAGCGCAAGGAGAACCTGTGCCACGTGTGCGGCAAGTCCTACCAGAACGCGTCGAAGCTGAAGTACCACATCGTGGCGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGGTACGTATGATGCACACGAGCGAGACGCCGCACCGCTGCGCGCACTGCGGGGCCGCCTTCGGCTGGTACTCGTCCCTCTACCGGCACACCAGGGAGGTGCACTACGGGATGAAAGTGGCGACGAAGGCGGTGAAGAAGTCAAAGTTGCTGCGCGACCTGCTGCAGCGGCCCGCGCCCTGA
- Protein Sequence
- MALEMEALCTTCLNSGRNLYVLADTELFRIYEQILNEISASQCEGSVLVRVCWECRAILRRFQRFKVQAQGCYRELLRHAHQQTSSLRRPERISLQVHQVHTSSYSVVKEEPDSLSLDNDGHEELETVAYDLVLDKDTDMINGQTRKSMQTHKTKVKKKVKLKKGRARRGTQLPPGPPSDGGSDGGLSGDCYELEEMRADIKNEVRYSPTPIDSSPRARSVKQEATEQPDVKTERDEVHEEPETVAYDLAVDKDGDTDSKGDRQTQKTKVKKKVKLKKSKSRKEKPQVPQGSPGVPGDPPWGPPPDGAEVGGADVKLGPGGGTAKGGRRARSREALPERPTCADCGKTFSSRKTFRYHRNVLHKGQNRYPCPRCARVYQWKSNLGRHMRTHKARDTGELYCEACDKSFASVATYRQHLRVSRKHVPETDYSFMCNECGKKFVDKTRLRDHIDWEHLKKIKYRCQICNNAFKCHTTLYVHMQNIHTNKERKENLCHVCGKSYQNASKLKYHIVAMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGVRMMHTSETPHRCAHCGAAFGWYSSLYRHTREVHYGMKVATKAVKKSKLLRDLLQRPAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -