Cpal003405.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000035.1:904869-907449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00019 0.011 16.3 3.1 1 23 161 184 161 184 0.98 2 18 3.6e-05 0.0021 18.5 0.8 1 23 193 216 193 216 0.96 3 18 0.021 1.2 9.9 0.7 2 23 229 251 228 251 0.97 4 18 0.00056 0.033 14.8 1.1 1 23 260 283 260 283 0.97 5 18 1.4e-05 0.00084 19.8 1.9 1 23 296 319 296 319 0.97 6 18 0.00013 0.0078 16.7 0.7 2 23 346 368 345 368 0.97 7 18 0.00076 0.045 14.4 3.4 2 23 378 400 377 400 0.96 8 18 0.031 1.8 9.3 0.5 2 19 405 422 404 425 0.92 9 18 0.001 0.058 14.0 0.5 2 21 430 449 430 452 0.95 10 18 0.15 8.7 7.2 1.9 3 23 462 483 461 483 0.95 11 18 0.1 5.8 7.7 6.0 1 23 488 511 488 511 0.93 12 18 0.00027 0.016 15.8 2.7 2 23 524 546 523 546 0.97 13 18 0.00041 0.024 15.2 1.5 1 23 573 596 573 597 0.94 14 18 0.039 2.3 9.0 0.4 2 23 603 624 602 624 0.95 15 18 0.039 2.3 9.0 1.8 3 23 629 649 628 649 0.97 16 18 5.5 3.2e+02 2.2 1.7 3 23 657 679 655 679 0.92 17 18 0.02 1.1 9.9 0.1 1 23 715 737 715 737 0.96 18 18 0.18 11 6.9 2.0 1 23 743 766 743 766 0.96
Sequence Information
- Coding Sequence
- ATGTctgttaatgaaattaaaataaaaataaaacaagaaaaggATTCAGATCGGAAAGATCCTACAACATTCTTGCCAGAAGAAGAAATGAGctatgaaataaagaaaaagaaaaaaaagaagaaaaaaaaagaccaACAGGAAGATCCGTTTAAGGATTTAGATGATAAGACAGCAGCGAGTACTGTCACTATCTATAATGAGTCACAGTTGGACCCAGAAGTTAATATTAAGGTGGAAAATATTGAAGTTGAATTAGACTTCAATGATtttgCTAACGACAATGGCCTCATGGTAGAGGGACCTCAAAGCGAAGATAGTCAGGAAGTGAAAATAGAACAGGATAACAAAGAAGCAGTACTTTTGACATTTGAGAGCATTATCAACCAAAATAAACTGATAGAAATGAACACTGGTCTTGAAATGAGCACAGGTTTTGAAATGGATGGTGCCCTTACTATGCCTCCATCGGCTCCAAACTATGTTTGTAAAGTCTGCCATCTAGTCTTTCAATCGCCCAAAACGTTAAAAATGCATCAGAAACGTAAGCACAAAGTGTTCCGTAGATCTTTCAAGCACATTTGCGATTACTGTGGCATGGCATATGAACAAAAGAATAGTCTGGTCGCTCATATGAAGAGAAAACACGGGCCAAATGCTACTCCTGATGACCGGGAGGAGAAAACTTGTGAAATATGTGCACTGGTGTTTAAGGGAGTTAATAGATTAAGAATGCACATGAGAAGAAAGCATGGAGCGTATGAGGATTCGTTCAAACATGTCTGCCAGGACTGTGGTCTCACCTATGATAAGTACAGGAGCTTAATAGTCCATATTCAGAGGAAGCATACCACAGACAACAATAAACAAGTTTTAGCTCAGTGGTTTAGTTGCCCATTCTGTCCAAAAGTATTCACCAGAAGAGAAACATATTCGAGACATGTTCAAAGGAAACATCGTATCCCTGACGAGGAGAATGGCGATATAAACTCAGAAGCAATAGAAAGCTGCAAGAATGAAGAGACTGGTGAGGTCACTTGTAAGGAATGCCCTCTGGTCTTTTCTAGTGTCAATTTCCTTAAACTGCACATGCGAAGGAAACATAATGCTTTGAAAGAGGATTTCCGCCTCAAATGCAAAATTTGTCACCTCTCGTACAACAAAATCGAAAGCTTAAAAAGACATGTTAGGCGAAAACATGATAAGGGGTCGTATTGCGAAGTGTGTAACAAGCAGTTTGATACTAGGGAAGCGTACCTAAATCATTCGCACATGAAACCGATTAGAGAATGCACTATTTGCGGGTTAATCTTTGCATCTAAAGGGGGTCTTGGTAAACATATGAGGTGCACACATAAAATAGACGAACCAAAAACTGTGTTCTGTTCGTTGTGTAACGAAGGATTTCATGATAAAAGACAGCTTAAGCCGCACTATATGAAAGTGCATTTGAAAGTGTCATACACTTGCCACGTGTGTAATAAGCAATTCAAGGCGAAAGAGAGTCATAGGAGGCACATCCTGTTCAAGCATCCAACGATTAATCAAACTACTAACAGTCAGCGTCAGAAATGCGATCATTGCACGGAATCGTTTCCAGACGAGATTGAACTGTGCAAGCACATTAAAATGAATCATGATTCAAAAGAAATCGCTCCCAGTGCAACGCAGCCTACCGTCAAAGTCGAGAAAGAAGATCCTGATATCAAAGACTGTTTCCAATGCACAAAGTGTCCAGAGAACTACATAACTTGGGAACAGTTGAAACTTCACTACGAACAGAACCATCACATGGCAGAGGATACACAGTGTCAAATATGCGGGAAAATCATGCGGGAAAACGAATTGGAAAAGCATATTAAAAACACTCACGCCTTAGCCAATTGCAGATATTGCGAATTTCAGACTACTAACCGCGCCAGTATGACACAGCATATGCTCAGGCATAAGAATGCGACCACTTTACACTGCGACTTTGCCGGGTGCAAATACAAGACTTACTATGAAATCGCTATGGAGAAGCACAAACGAAAACATCGCGACATCGGTGTAAAGCTTCAATGTTCGCAGTGTCCCTTCCAGTCgatgaataaatatattctaAAATATCATGAAGAAGCCCATACGACTGGCAAGAAAAAGTACGCTTGCAACCAGTGCGATTATGCGACTATTTTGCCCGCTAATCTAGTTCAACATAAGTACAAGCATTCTACAGAGAAAAGGTTTAAATGTGAAGTATGCCCGTTTGCGACAAAGTACAATACCTCATTGCGCTTCCACGTTAAGAAGAAACATTGTGATCTCCCTACTTTCAGTTAG
- Protein Sequence
- MSVNEIKIKIKQEKDSDRKDPTTFLPEEEMSYEIKKKKKKKKKKDQQEDPFKDLDDKTAASTVTIYNESQLDPEVNIKVENIEVELDFNDFANDNGLMVEGPQSEDSQEVKIEQDNKEAVLLTFESIINQNKLIEMNTGLEMSTGFEMDGALTMPPSAPNYVCKVCHLVFQSPKTLKMHQKRKHKVFRRSFKHICDYCGMAYEQKNSLVAHMKRKHGPNATPDDREEKTCEICALVFKGVNRLRMHMRRKHGAYEDSFKHVCQDCGLTYDKYRSLIVHIQRKHTTDNNKQVLAQWFSCPFCPKVFTRRETYSRHVQRKHRIPDEENGDINSEAIESCKNEETGEVTCKECPLVFSSVNFLKLHMRRKHNALKEDFRLKCKICHLSYNKIESLKRHVRRKHDKGSYCEVCNKQFDTREAYLNHSHMKPIRECTICGLIFASKGGLGKHMRCTHKIDEPKTVFCSLCNEGFHDKRQLKPHYMKVHLKVSYTCHVCNKQFKAKESHRRHILFKHPTINQTTNSQRQKCDHCTESFPDEIELCKHIKMNHDSKEIAPSATQPTVKVEKEDPDIKDCFQCTKCPENYITWEQLKLHYEQNHHMAEDTQCQICGKIMRENELEKHIKNTHALANCRYCEFQTTNRASMTQHMLRHKNATTLHCDFAGCKYKTYYEIAMEKHKRKHRDIGVKLQCSQCPFQSMNKYILKYHEEAHTTGKKKYACNQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00673701;
- 90% Identity
- -
- 80% Identity
- -