Cpal009892.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000124.1:32171-36295[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1 65 4.4 0.5 3 23 48 67 47 67 0.83 2 12 6.2e-05 0.0036 17.8 0.0 1 23 73 95 73 95 0.98 3 12 0.00096 0.056 14.0 0.5 6 23 105 122 104 122 0.99 4 12 8.4e-05 0.0049 17.4 0.1 1 23 128 150 128 150 0.98 5 12 0.00015 0.009 16.5 0.1 3 23 158 178 156 178 0.96 6 12 0.00039 0.023 15.3 0.2 5 23 187 205 185 205 0.97 7 12 0.00055 0.032 14.8 0.9 2 23 452 474 452 474 0.96 8 12 4.4e-06 0.00025 21.4 0.3 1 23 480 502 480 502 0.97 9 12 1.3e-05 0.00077 19.9 0.2 2 23 509 530 508 530 0.96 10 12 0.0021 0.12 13.0 1.0 3 23 538 558 536 558 0.95 11 12 0.00075 0.044 14.4 1.2 1 23 564 586 564 586 0.95 12 12 0.0004 0.023 15.3 5.8 1 23 591 614 591 614 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGGGAACCGGAAAAAACGGTAGAAGACACCGGACGGGGCCCTGAGCCCGGTGCGGAGGCAGGGGCGGCCCCGCGCGGTGAAGAGgaggaggggggaggggggacAGTGGTGGTGGGGGGGAAGAGGTTCGTGTTCTGCGCGGCGTGCGACAAGGACGTGCTGCGGAGCTCGTGGCGCCGGCACCAGCGCTCGCACCGAGGCGAGCGCCGCTACAGCTGCGCAGCGTGCGGGTTATCATTCTCAGACGGCGGCAACCTAGCGCGGCACGCTCGCACGCACGCGCACGCACGTCCCTACGTGTGCGCGTGCGGGCGGGCGTTCTCGCGTCGCGCGCACCTGCTCGACCACGAGCGGTCGCACGGGGAGACGCGCGAGTTCGTATGCGACGCGTGCGGCAAGGCGTCCAAGTCAGCGGCCGCGCTGCGCATGCACCGCCGCACGCACGACGCCGCCCGCCGGTTCGGCTGCATGGAGTGCGGCGCGCGGTTCAAGCGCAACGCGGAGCTGCGGGCGCACGTGAGCGTGCACacgggcgagcgcgcgcacgcgtGCGTGTGCGGGAAGGCGTTCCGGCTGCGCGCGCAGCTCACGGCGCACGCGCGCACGCACGCCCCCACAGACACACTCGAGCATAGTAATGTGATGAAGGTGGACGCGAGCAcggagccgccgccgccggcgcgggcgcgggcgcgggcctgcgcgcgctgcccgctgtggccgccgccgcccgcgccgcccgccccccGCCCGGCCTTCCGCTGCGAGGAGTGCCACTCCTACCAGGACCTGGACGACCTGCTGTTCCACATGAACCGCCACGCGCAGGAGCTGTGCCCGCAGGAGATCAAGGACGAGTACTACGGCACCCTGGATAAGGAGGACCAGGACGATTATGTTAAAATGAATGAGCTGGAGATCAAAAGGCTGCACGAGTACTTCGACAGACAGGAGCGGGCGTGGGCGATGGAGCAGGCCGAGCTTCGGAAGCGGAGACTCGACGAGGAGGACCGGCGGCTCGCGAGGGAGGAGGCGCCGTCCAGCTCCGAGGAGGACAAGAAACTAGCCTCGTTGGAGCCGGCGAAGGATTCGAACCACGTGAGGCGGAAGAGAAGCGACGTGGTGGAGTCGGACGCGGAGCGCGCGCCGGGGAGGAAGCAGAGGAGGACCAAGAGGGTCGGGAAGACGAGGGCGCGGGCCTCTCGCGACGACGGCAACGACGGCGACGACGAAGTTGCGGGGACGAGCGGAGCGCAGGCGGGGACGAGCGGAGTGGGGGTGGGGACGGGCGGGGTCGAGGCGGTGACGAGCGCGGGGACGGGTGGCGGGGACAAGAGCGTGTCGCGCACGTGCCCGCTGTGCGGCAAGCAGTACCGCGCGTCGTCGAGCTACTTCTACCACATGAAGTACTTCCACAAGCGCAGCCGCGAGCACGAGTGCTCCGTGTGCGGCAAGCGGTTCGGCACCAAGGCGAACCTTGCTCAACACGCGGCCACGCACTCTGGCGCTTACGAGCTGGAGTGCGGCGAGTGCGGCAAGCGGTTCCGCTCGAAGGCGAGCCTGTACATCCACGCGCAGAGCCACGGCGGCGCCAAGCGCTGGGCGTGCGCGCAGTGCGGCCGCTCGTTCCGCTGGCGCACGCACCTCGCGCGCCACGTGACGCGCCAcgccgccgagcgcgcgcacgcgtGCGCCAGCTGCGGCCGCGCGTTCGCCGTGCGCTGCGACCTGCTGCGGCACGCGCGCACGCACTCCAATGCCGAGTTTCACTGTGCGAAGTGCGGACACAAGTTTGCGCAGAAACGTTATCTTAAGGTGCACATGCTGAAGAAGCACGCGGACTCGGAGGGCGGGGCGGAGACGCCGCCGGCCGGGTCCGCCGGGTCCGCCGGGTCCGCGCGGTCCGCGGCGCCCGCCTCCTGA
- Protein Sequence
- MEGEPEKTVEDTGRGPEPGAEAGAAPRGEEEEGGGGTVVVGGKRFVFCAACDKDVLRSSWRRHQRSHRGERRYSCAACGLSFSDGGNLARHARTHAHARPYVCACGRAFSRRAHLLDHERSHGETREFVCDACGKASKSAAALRMHRRTHDAARRFGCMECGARFKRNAELRAHVSVHTGERAHACVCGKAFRLRAQLTAHARTHAPTDTLEHSNVMKVDASTEPPPPARARARACARCPLWPPPPAPPAPRPAFRCEECHSYQDLDDLLFHMNRHAQELCPQEIKDEYYGTLDKEDQDDYVKMNELEIKRLHEYFDRQERAWAMEQAELRKRRLDEEDRRLAREEAPSSSEEDKKLASLEPAKDSNHVRRKRSDVVESDAERAPGRKQRRTKRVGKTRARASRDDGNDGDDEVAGTSGAQAGTSGVGVGTGGVEAVTSAGTGGGDKSVSRTCPLCGKQYRASSSYFYHMKYFHKRSREHECSVCGKRFGTKANLAQHAATHSGAYELECGECGKRFRSKASLYIHAQSHGGAKRWACAQCGRSFRWRTHLARHVTRHAAERAHACASCGRAFAVRCDLLRHARTHSNAEFHCAKCGHKFAQKRYLKVHMLKKHADSEGGAETPPAGSAGSAGSARSAAPAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -