Cpal013075.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000183.1:1552008-1568358[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0019 0.11 13.1 0.2 1 23 619 641 619 641 0.95 2 12 0.1 6.1 7.6 0.6 6 23 761 779 757 779 0.92 3 12 0.011 0.65 10.7 2.6 1 23 787 809 787 809 0.96 4 12 0.0059 0.35 11.6 1.3 3 23 819 840 817 840 0.93 5 12 5.4e-05 0.0032 18.0 0.4 1 23 846 868 846 868 0.98 6 12 0.00037 0.022 15.4 2.8 3 23 875 895 873 895 0.96 7 12 3.4e-06 0.0002 21.8 1.8 3 23 903 923 901 923 0.96 8 12 1.1e-05 0.00066 20.1 0.8 1 23 929 951 929 951 0.99 9 12 4.6e-08 2.7e-06 27.6 0.4 1 23 957 979 957 979 0.98 10 12 7.1e-05 0.0042 17.6 0.4 1 23 985 1007 985 1007 0.98 11 12 0.00022 0.013 16.0 3.4 1 21 1013 1033 1013 1035 0.96 12 12 5.8e-05 0.0034 17.9 0.1 1 23 1041 1063 1041 1063 0.97
Sequence Information
- Coding Sequence
- ATGATACACGGTCAACCGGTGCTGTCCCCAATTCTCGAGGAATCTTCTGAACAAGCGTTGCCAATTCCCGAGGAATCTTCTGAACAAGCGTTGCCAATTCCCGAGGCACCTGAGCAAGCGTTGCCAATTCCCGCACCTTCAGAGCAAGCGTTGCCTACCACCAGCAGAAACACCCCCAGCCCGCTGCCCGAACTGATTATCGAGCCAGAACCGAACCGCCACGACGACCCCCCTGAGTTCTACGAGGCCATGTTCAAAAGAGTCGCGAAGATTTACAAAAAACTATTCTTGGATACTCGCACGCCGGATTCTGTGACTTCAATGTCGGACGAAAGTCCTGCCGACCGAACTTACGATGTTGAGCATCACCCGGATAGACATCAGACTGGCACGGAGCTTCGAACCCCGTCAGAGGCAAGAAGGGCACAATTAagttcatcgtcatcatcaatTTCACAAGATCACGAAACAATATCAACTGACCACCGCGAGCTATTACCTGATCAGACTGGAGTGGAGCTTCGGACCCCGCCAGaagctGGATCAGACCCTGGGACTTCCCGGTCATTGTTGGAGCCAGAGATCATGAGGGCGGCGAGCACTAGACGTAAACGGTACAGCCAGCAGGATTCCTTACAAACTGAAGGTTTAATGATGCCTGAAGTCAGTTTCGGTTCGTGTGCCACTTCCACGCCAAAGATAAGAAGGGCGACTAGAGTCAGCTTCCAACGTACGTCAGAAACACGAGAACCTACTCCAGAAACACGAGAAGGTGTGCAACCTACATCAGAAGCACAATCCTTACAAACTGAAGGTTTAATGATACCAGAAGTCAGTTTCGGTTCGTGTGCCACTTCCACGCCAAAGATAAGAAGGGCGACTAGAGTCAGCTTCCAACGTACGTCAGAAACACGAGAACCTACTCCAGAAACACGAGAAGGTGTGCAACCTACATCAGAAGCACAATCCTTACAAGCTGAAGGTTTAATGATACCAGAAGTCAGTTTCGGTTCGTGTGCCACTTCCACGCCAAAGATAAGAAGGGCGACTAGAGTCAGCTTCCAACGTACGTCAGAAACACGAGAACCTACTCCAGAAACACGAGAAGGTGTGCAACCTACATCAGAAGCACAATCCTTACAAACTGAAGGTTTAATGATACCAGAAGTCAGTTTCGGTTCGTGTGCCACTTCCACGCCAAAGATAAGAAGGGCGACTAGATTCAGCTTGCAACGTACGTCAGAAACACGAGAACCTACTCCAGAAACACGAGAAGGTGTGCAACCTACATCAGAAGCACAATCCTTACAAACTGAAGGTTTAATGATACCAGAAGTCAGTTTCGGTTCGTGTGCCACTTCCACGCCAAAGATAAGAAGGGCGACTAGATTCAGCTTGCAACGTACGTCAGAAACACGAGAACCTACTCCAGAAACACGAGAAGGTGTGCAACCTACATCAGAAGCACAATTAAGCCAGAGTCAAAGCGAGTACAGGCCACCAGCGAAACGTATGAAATTGGATGTATCGACACAAACCAGCTTTAGTTCGAGTTCAGATGACGAGACAGAACTATTTAGAGAATCGACGCGCCTGAGGCCGCTTTCCGACAAAATGGGAGCCGACAACAGAACTATTCTAGAAGTTCTCTCTTTCGTAGCTGATATTAATGTAACAACTAGTTCCAGGTATCCCCAGCAAGTTTGTGATGAGTGCTTCGAACTGTTGTGTAAAACTGATGGTTTTAAGAAGACGTGTGTGAAATCTGATAACGTTTTAAAAGTGATGTTTGACAACACAGTTACTGATAATGGGGTGAAATTAGAAGCTATTCCGAAGTTAGGTTTGGAGCCCTATCAGTGTCCTATGTGCTTCGAAAAGTTCATGACGCCTATGTCGTTAGAATCCCATGTGTACGGCCATTACTGTGTGAAGGATTCGAGCAAGGAGATAGATTACAATTTAGCTATCGGTGTAGAATGTGATGAGGTCAATGTGAATGACATAGCCAAACCGTACGAGGTCAAGGAAGAAGGAGTTGATTTAGGAGCCACAGACTATACAGATTCCTTTGATGTAGGTGTAGATTACATAGACTCATCAGATTATAAACAggagACTGAAAAGACCTTTGAGTGCGCCTGCGGCTTGCCATTCGCAGAAGATAAGGACTATAATTCCCACACAGCGAGCTGCAACCATTCAATAACACGCTTGCCCTCAAGAGCGAAGCTTAAGaaaacgtcaaaaaaaaaagtgaaaaatgaAGTGTGTATAAGTTGCAGTGCATCTTTTACATCATTAAAATCATTGAGACTACATCAGAAGAATGCTCACAATGACGAATCTAATGAGATATACCTGTGTACTACTTGCGAGCGGTCGTTCCTTAGGAAGAACTCTTACTTGACTCATATGAAGATGCACGAACTGAAAGACCATTTGAAGGTGATATGTAACACTTGCAAGCGGGAATTTCAGCATCAGGCACACTTGGATAACCACATTCTGGCTGTTCATACACGGGATAAAGGATACAGTTGTGACGTATGCGACATAAGTTTCGCGACACCGGAATGTCTCAACATACACAAGGAGACCCACAAGGTGAAGAAACACCTGTGCAAGCTGTGCAACAAGGCGTTCCAGATGATGTCGACGCTGAACGAACACATGAGGACCCACACTGGGGAGCGGCCGCACCTGTGCTCCATATGTGGACGCGGCTTTACGCAGAAGAACAATCTGGAACAGCACGTTAGGAGGCATAAGGGACTTAAGCCGTTTAAATGCGATACGTGTGAGAGAAGATTCGTGTCGAAGGGGGAGCTGGTGGCGCACACCAGGAAGCACAGCGGCGCGCACCCGTTCGTGTGCGACGACTGCGGCAAGGGGTTCACCACGTCGAGCTCGCTCGTCAAGCACCGCCGCATCCACACCGGCGAGCGCCCGTACGCCTGCGACCTGTGCCCCATGAGATTCTCAGCGTCAGGCACCCTCAAGAACCACCGCCGCACCCACACGGGCGAGAAGCCCTACCAGTGCTCCCACTGCGAAAAGGCCTTCGTCCAACGCCAGGACCTAGTCTCCCACATCCGCTGCCACACCGGCGAGAGGCCTTACGCGTGCGGCAGCTGCGGCCAGGCCTTCCGGAAGGCCTCCGCGCTCAAGACCCATGTAAAGGTCCACGGTAAAGACGGGAGTCAACTGCTGGGGCCGATGCACGATGTTAGCGCGCTCTTGACTCATGTCAGCTAG
- Protein Sequence
- MIHGQPVLSPILEESSEQALPIPEESSEQALPIPEAPEQALPIPAPSEQALPTTSRNTPSPLPELIIEPEPNRHDDPPEFYEAMFKRVAKIYKKLFLDTRTPDSVTSMSDESPADRTYDVEHHPDRHQTGTELRTPSEARRAQLSSSSSSISQDHETISTDHRELLPDQTGVELRTPPEAGSDPGTSRSLLEPEIMRAASTRRKRYSQQDSLQTEGLMMPEVSFGSCATSTPKIRRATRVSFQRTSETREPTPETREGVQPTSEAQSLQTEGLMIPEVSFGSCATSTPKIRRATRVSFQRTSETREPTPETREGVQPTSEAQSLQAEGLMIPEVSFGSCATSTPKIRRATRVSFQRTSETREPTPETREGVQPTSEAQSLQTEGLMIPEVSFGSCATSTPKIRRATRFSLQRTSETREPTPETREGVQPTSEAQSLQTEGLMIPEVSFGSCATSTPKIRRATRFSLQRTSETREPTPETREGVQPTSEAQLSQSQSEYRPPAKRMKLDVSTQTSFSSSSDDETELFRESTRLRPLSDKMGADNRTILEVLSFVADINVTTSSRYPQQVCDECFELLCKTDGFKKTCVKSDNVLKVMFDNTVTDNGVKLEAIPKLGLEPYQCPMCFEKFMTPMSLESHVYGHYCVKDSSKEIDYNLAIGVECDEVNVNDIAKPYEVKEEGVDLGATDYTDSFDVGVDYIDSSDYKQETEKTFECACGLPFAEDKDYNSHTASCNHSITRLPSRAKLKKTSKKKVKNEVCISCSASFTSLKSLRLHQKNAHNDESNEIYLCTTCERSFLRKNSYLTHMKMHELKDHLKVICNTCKREFQHQAHLDNHILAVHTRDKGYSCDVCDISFATPECLNIHKETHKVKKHLCKLCNKAFQMMSTLNEHMRTHTGERPHLCSICGRGFTQKNNLEQHVRRHKGLKPFKCDTCERRFVSKGELVAHTRKHSGAHPFVCDDCGKGFTTSSSLVKHRRIHTGERPYACDLCPMRFSASGTLKNHRRTHTGEKPYQCSHCEKAFVQRQDLVSHIRCHTGERPYACGSCGQAFRKASALKTHVKVHGKDGSQLLGPMHDVSALLTHVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -