Basic Information

Insect: Carterocephalus palaemon
Gene Symbol: -
Assembly: GCA_944567795.1
Location: CALYMS010000059.1:202113-205553[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.11 6.5 7.5 0.0 2 23 38 60 37 60 0.94

2 18 0.35 20 6.0 0.3 2 23 85 107 84 107 0.91

3 18 0.0012 0.07 13.7 0.1 2 23 129 150 128 150 0.97

4 18 4.7e-06 0.00028 21.3 0.1 1 23 154 177 154 177 0.98

5 18 0.027 1.6 9.5 0.6 1 19 181 199 181 201 0.93

6 18 0.0077 0.45 11.2 0.6 1 22 209 230 209 232 0.87

7 18 0.0028 0.16 12.6 0.2 2 23 240 262 240 262 0.93

8 18 0.0044 0.26 12.0 0.6 1 20 267 286 267 290 0.90

9 18 0.4 23 5.8 0.5 1 11 296 306 296 308 0.91

10 18 0.35 21 6.0 0.0 3 23 338 359 336 359 0.93

11 18 5.2 3e+02 2.3 0.6 2 23 383 405 382 405 0.87

12 18 0.041 2.4 8.9 1.1 2 23 428 449 427 449 0.97

13 18 3.5e-06 0.0002 21.7 4.1 1 23 453 476 453 476 0.96

14 18 0.0033 0.19 12.4 0.2 1 20 481 500 481 501 0.96

15 18 0.0045 0.26 11.9 0.8 1 22 509 530 509 532 0.88

16 18 0.078 4.6 8.0 0.1 3 21 541 559 540 562 0.88

17 18 0.00019 0.011 16.2 0.3 3 23 569 589 567 589 0.93

18 18 0.00018 0.011 16.3 3.1 1 23 595 617 595 617 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.11	6.5	7.5	0.0	2	23	38	60	37	60	0.94
2	18	0.35	20	6.0	0.3	2	23	85	107	84	107	0.91
3	18	0.0012	0.07	13.7	0.1	2	23	129	150	128	150	0.97
4	18	4.7e-06	0.00028	21.3	0.1	1	23	154	177	154	177	0.98
5	18	0.027	1.6	9.5	0.6	1	19	181	199	181	201	0.93
6	18	0.0077	0.45	11.2	0.6	1	22	209	230	209	232	0.87
7	18	0.0028	0.16	12.6	0.2	2	23	240	262	240	262	0.93
8	18	0.0044	0.26	12.0	0.6	1	20	267	286	267	290	0.90
9	18	0.4	23	5.8	0.5	1	11	296	306	296	308	0.91
10	18	0.35	21	6.0	0.0	3	23	338	359	336	359	0.93
11	18	5.2	3e+02	2.3	0.6	2	23	383	405	382	405	0.87
12	18	0.041	2.4	8.9	1.1	2	23	428	449	427	449	0.97
13	18	3.5e-06	0.0002	21.7	4.1	1	23	453	476	453	476	0.96
14	18	0.0033	0.19	12.4	0.2	1	20	481	500	481	501	0.96
15	18	0.0045	0.26	11.9	0.8	1	22	509	530	509	532	0.88
16	18	0.078	4.6	8.0	0.1	3	21	541	559	540	562	0.88
17	18	0.00019	0.011	16.2	0.3	3	23	569	589	567	589	0.93
18	18	0.00018	0.011	16.3	3.1	1	23	595	617	595	617	0.98

Sequence Information

Coding Sequence: ATGACCTGGGCCGTTTGTATTGTTCTAGGCGGCACTGGCTTCATGCACAACGCCAAAACCATCGTCACATACACCACCGCGTACCCCTTTAGGCTGCCGAAGACCTCTCTGATGTGCGTGTACTGCGCCGAGACCGTGCCCGACCCGGCCCAGTTCGGGCGCCACATGCAGGAGGAGCACCCCACCTTCTGGCTCCCCGCCGCGTTCGCTCACGTGCTCGAAGATAATTTGAAAGTCGACATCACAGACTTGCGCTGTCGCGTATGCAATGTAAAATTCGAAGACCTCGACACCATCGCGATACACTTGCACGAAAGCCACTCGCACACGATCGACTTCGACCAGCCGTTAGGCTTGCATCCGTTCAAGTTCGCAGACCGGTTGCAGTGTGTCGAGTGCGCTCGCGTGTTTCCAACCCTGCGCCTGCTCAGCCGGCACACGGCGACGCACTACCAGAGGTACACCTGCGAGGAGTGCGGGAGGAGTTACTCGGTGCTGAACTCGCTGCAGGCGCACGTGCGCAGCGCGCACGCCGACGGACACGTGTGCAGGAAGTGCAAACGAATCTTCAGCACTCTAGAGGCCAGGAGACGCCACTGGGATGCCGACGAGGAGTGCCGGCCGTATCGCTGCGCGGAGTGCGGGCGGCGCTTTCATACCTGGGACGTGAAGCAAACCCATTTGGTAGAGGAACATGGACACGAGAAATCGAGGAACGAGTGCGTCGAATGCGGCCTGGAGTTCAGGGACAGGAAGGCGTTCGCGAGACACTTCGAAAGGGCGCACTCGCGGTTGGTGTTCGAGTGTCCCCTCTGCGAGCAGACGTTCAGCAGCAGGCGGAGCCAGGTCAGGCACGTCGGCTTCACGCACGGCCACCAGCAGATTCACCGGTGTGACGTGTGCGAGAAAACGTTCAATGAGACTCCGCAATCAGCGGCTAGGAATAACGCGAAGACCATCTTGTCGTACTCGACCGCCTACCCCTTCCGCGTGCTGAAGACGACCGTCATGTGCGTGTACTGCGCGGACACGTTCGCGGAGCCGGCGGCCTTCCGCGCGCACATGCAGGCGGAACACGAGACCTTCTGGCTGCCCGCGGCCTTCTCGCAGAAGGTGAACCACCTGAAGGTCGACATCACCGACCTTCGCTGCCGCGTCTGCCACCTCAGGTGCGACGGACTCGACGAGATCGCCAAGCACCTGGACGCAGCTCACTCCCACAGGATCAACTTCGACCAGCACCTGGGCCTGCACCCGTTCCGGTTCGACGGGGACCGCATCCGGTGCGTCGTGTGCGAGAAGATCTTTCCGTGCATCCGCTCGCTCAGCCGGCACATGTCGACGCACTTCATGAAGTTCACGTGCGAGGAGTGCGGCAAGAGCTGCGTGCGCTCCCACTCGCTCAAGGAGCACATGCGGTTCGTGCACGCGCGGGACGCTTTTACGTGCCGCAAGTGCGGCGGGACGTTCGGCACGCTCGAGAAGCTACGGCGGCACGTCGCGGCCAGCGAGCCGTGCTGGCCGTACAGGTGCCCCGTGTGCCGGCAGACGTTCCGCACGTGGCTCAAGCGGCAGGCGCACCGCGTGGAGAAGCACGGACTCAAGCAGGAGTCGCCGGCGTGCGGGAAGTGCGGGGAGGTGTTCGCGGCGCGGCACGCGTACCTGAAGCACTTCGCGGCGGTGCACGCGGAGGGGGGGCTGGCCTGCGCGGTCTGCGGGAGGGGGTTCAGCGACAAGCGCTGCTTGCAGCGCCACGCCGTGGTGCACAGCAAGGCCAGGGACTACCAGTGCACGGTGTGCCTGAAGACGTTCACGAGGAAGGAGTACCGCGATAAGCATATGAAGCTGCACGGCGCCGGGGAGTGA
Protein Sequence: MTWAVCIVLGGTGFMHNAKTIVTYTTAYPFRLPKTSLMCVYCAETVPDPAQFGRHMQEEHPTFWLPAAFAHVLEDNLKVDITDLRCRVCNVKFEDLDTIAIHLHESHSHTIDFDQPLGLHPFKFADRLQCVECARVFPTLRLLSRHTATHYQRYTCEECGRSYSVLNSLQAHVRSAHADGHVCRKCKRIFSTLEARRRHWDADEECRPYRCAECGRRFHTWDVKQTHLVEEHGHEKSRNECVECGLEFRDRKAFARHFERAHSRLVFECPLCEQTFSSRRSQVRHVGFTHGHQQIHRCDVCEKTFNETPQSAARNNAKTILSYSTAYPFRVLKTTVMCVYCADTFAEPAAFRAHMQAEHETFWLPAAFSQKVNHLKVDITDLRCRVCHLRCDGLDEIAKHLDAAHSHRINFDQHLGLHPFRFDGDRIRCVVCEKIFPCIRSLSRHMSTHFMKFTCEECGKSCVRSHSLKEHMRFVHARDAFTCRKCGGTFGTLEKLRRHVAASEPCWPYRCPVCRQTFRTWLKRQAHRVEKHGLKQESPACGKCGEVFAARHAYLKHFAAVHAEGGLACAVCGRGFSDKRCLQRHAVVHSKARDYQCTVCLKTFTRKEYRDKHMKLHGAGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -