Cpal010665.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000139.1:83229-102461[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0043 0.25 12.0 1.5 1 23 241 263 241 263 0.98 2 15 0.0046 0.27 11.9 4.5 1 23 270 292 270 292 0.98 3 15 2.1 1.2e+02 3.5 0.2 1 23 296 319 296 319 0.82 4 15 1.5e-05 0.00086 19.8 0.1 1 19 325 343 325 345 0.96 5 15 0.00056 0.032 14.8 2.1 2 23 355 377 354 377 0.95 6 15 0.00036 0.021 15.4 0.2 1 23 390 412 390 412 0.94 7 15 0.00036 0.021 15.4 0.2 1 23 440 462 440 462 0.94 8 15 0.00036 0.021 15.4 0.2 1 23 478 500 478 500 0.94 9 15 2.5 1.5e+02 3.3 0.2 1 10 506 515 506 518 0.88 10 15 0.00036 0.021 15.4 0.2 1 23 523 545 523 545 0.94 11 15 9.5e-06 0.00056 20.4 0.1 1 21 551 571 551 576 0.93 12 15 6.8e-05 0.004 17.7 0.4 2 23 585 607 584 607 0.96 13 15 5.3e-05 0.0031 18.0 0.6 1 23 613 636 613 636 0.96 14 15 2.8e-07 1.6e-05 25.2 0.5 1 23 645 667 645 667 0.98 15 15 0.0026 0.15 12.7 0.0 1 23 673 696 673 696 0.96
Sequence Information
- Coding Sequence
- atgAGTGCTAAATCCTCGTTTTGCCTGGGGTGTTTGTGTAGCAGCAGTGATACTACTTTATCTGATTACAAGATAAGAGATGGACCAATGAAAGAAATTCTTCAGATGGATGAAATATGTTTGTGTTATATATGCAAGCACGTTGCTCGGAGGAGTGAGctgtttataaaaaatgtacaaAGCAATCAAATGTTACTGGAGAACACACAACATAATGTAACAGACTCCATCCTAGATTCTGCTCATAATCAGTCTCAAATGCTATACCTCACTCGCACAATATTAGATCCAATAGATGTGTGTTGTAAAGATAAAGATATGTCTATTAAACTTGAGGTGAAACATGAGAATGGTTTCCTCGATCACTTGGAAGGAGATTTCATTGAAGATGATAATGACTATCAAGACCCAACGGTCAAAGCAGAGGATGATGATTTCCCGCTGAAAGATTTATTCCAACAAAAGTTTGGCATTGATACGCTCAGTATGAAACTGCGCAGGTCCGTTAGGAGGAGCCACAGGAGGGCGGAGAAAAATGTAGGCAGGAGAAAAAAACATTCACGGAAGAAAAGAGATCTTGAAGATTACTCCAAAGAAGATTTTCCGATAAGTGACTTGTTAAAGAatttttacAAGACTGAAATGGTTTACATAACAAGAGAACAGTGTATGGAGGAGCGCGATCGTATGGTAGATAGTAAGAAGTACAAAGGATGCGTATACAAGTGTACAGATTGCATAAAAGGCTTCAACTTTAGAGAGAGCTACGACAAGCACATGGAGAGTCATAGTGAgTCCGCCGGCGCCTACGAGTGCGACATCTGTAGGCAGAGGACGTGTTCCCGGGAGAAGTTGTCTCGACACAGGAAGAGCCACGAGGTGCGCTACAGATGCGTGGAGTGCGGCCTAACGCGTATAAACCGGCTGACGATACTGGAACACTACAACGCTTTCCACTCGGACACGCCCTCCTATGTCTGCTCGCAGTGTCCCAAGGCGTTCAAACGGCAGGTGTCGCTGCGCAAGCACGCGGCGTGCGTgcacggcgggcgcgcgcgcgtcacCTGCCAGCACTGCCAGAAGACGTACGCCAGCAAGGAGGTGCTCAAGTCGCACATGTTTGTGAGGCATCCGCTGGAGGTGTCAGCGGGTAAAGTGTTGAAGCAACACGTGTGCAAGGAGTGCGGCGCGGCCTTCTCGGCGCCGTCGCTGCTGCGGAACCACAGCGTCAAGCACTCGCTCGATAGGAACTACTACTGCGTCGAGTGTGACAAGAGGCATCCGCTGGAGGTTTCAGCGGGTAAAGTGTTGAAGCAACACGTGTGCAAGGAGTGCGGCGCGGCCTTCTCGGCGCCGTCGCTGCTGCGGAACCACAGCGTCAAGCACTCGCTCGCCAGGAACTACTACTGCGTCGAGTGTGACAAGTCACAACACGTGTGCAAGGAGTGCGGCGCGGCCTTCTCGGCGCCGTCGCTGCTGCGGAACCACAGCGTCAAGCACTCGCTCGTTAGGAACTACTACTGTGTCGAGTGCGACAAGtcagtatcgctgcgacccattgacCAACACGTGTGCAAGGAGTGCGGCGCGGCCTTCTCGGCGCCGTCGCTGCTGCGGAACCACAGCGTCAAGCACTCGCACGTTAGGAACTACTACTGCGTCGAGTGCGACAAAAGCTTTAAATCGGAGGCGGCCTTACAACGACACGTCAAGATCGCAGCGCCTCACGTCACCTATTTGGAACTGCCATTACCGTGTACGTCGTGCGAGAAGCGTTTCGCTGTCCGGCGGGACTTGGAGAGGCACATGAATCGTGTCCACCTCAACATTCGCCCCTACCAGTGCGATAAGTGCGATAGAGCATACGTGAACAACTGGTCCCTGAACGAGCATAAGCGCTTCGTCCACGAGGGCCACAAGCGGCCGCTCAAGTACCCCTGCTCCATGTGCGACAAAGTGTTTGAcCGCAACCAGACGCTCAAAGCGCACGTGCGCACCCACACGGGCGAGCGGCCGTTCCCGTGCGGCCGCTGCCCCGCCAAGTTCGCCCAGAGCAGCGCGCTCGGCACCCACGTGCGGCTCGTGCACCTGCGGCTGGCGCGCGACGGCACGCCCCGGGACAAGGGCAAGtag
- Protein Sequence
- MSAKSSFCLGCLCSSSDTTLSDYKIRDGPMKEILQMDEICLCYICKHVARRSELFIKNVQSNQMLLENTQHNVTDSILDSAHNQSQMLYLTRTILDPIDVCCKDKDMSIKLEVKHENGFLDHLEGDFIEDDNDYQDPTVKAEDDDFPLKDLFQQKFGIDTLSMKLRRSVRRSHRRAEKNVGRRKKHSRKKRDLEDYSKEDFPISDLLKNFYKTEMVYITREQCMEERDRMVDSKKYKGCVYKCTDCIKGFNFRESYDKHMESHSESAGAYECDICRQRTCSREKLSRHRKSHEVRYRCVECGLTRINRLTILEHYNAFHSDTPSYVCSQCPKAFKRQVSLRKHAACVHGGRARVTCQHCQKTYASKEVLKSHMFVRHPLEVSAGKVLKQHVCKECGAAFSAPSLLRNHSVKHSLDRNYYCVECDKRHPLEVSAGKVLKQHVCKECGAAFSAPSLLRNHSVKHSLARNYYCVECDKSQHVCKECGAAFSAPSLLRNHSVKHSLVRNYYCVECDKSVSLRPIDQHVCKECGAAFSAPSLLRNHSVKHSHVRNYYCVECDKSFKSEAALQRHVKIAAPHVTYLELPLPCTSCEKRFAVRRDLERHMNRVHLNIRPYQCDKCDRAYVNNWSLNEHKRFVHEGHKRPLKYPCSMCDKVFDRNQTLKAHVRTHTGERPFPCGRCPAKFAQSSALGTHVRLVHLRLARDGTPRDKGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -