Cpal004078.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000043.1:1067117-1077566[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 8.3e-07 4.9e-05 23.7 2.4 1 23 196 218 196 218 0.98 2 30 0.0016 0.095 13.3 0.7 2 20 272 290 271 292 0.93 3 30 3.9e-05 0.0023 18.4 0.1 2 23 321 343 320 343 0.96 4 30 1.8 1e+02 3.8 0.7 2 19 365 382 364 384 0.83 5 30 0.0051 0.3 11.8 1.4 1 23 395 417 395 417 0.96 6 30 0.62 36 5.2 0.1 2 23 440 461 439 461 0.94 7 30 2.7e-05 0.0016 18.9 0.9 2 23 499 520 498 520 0.97 8 30 0.0002 0.012 16.2 2.0 2 23 570 592 570 592 0.97 9 30 0.00052 0.03 14.9 1.7 1 23 642 665 642 665 0.97 10 30 0.019 1.1 9.9 1.0 1 23 722 744 722 744 0.97 11 30 0.0019 0.11 13.1 5.7 1 23 755 777 755 777 0.99 12 30 0.035 2 9.1 1.6 2 23 789 810 788 810 0.96 13 30 0.0052 0.3 11.7 0.7 1 23 820 842 820 842 0.98 14 30 0.001 0.061 13.9 6.4 1 23 871 893 871 893 0.96 15 30 0.0023 0.13 12.9 3.8 1 23 904 926 904 926 0.97 16 30 2e-05 0.0012 19.4 1.4 1 23 934 956 934 956 0.98 17 30 0.00066 0.039 14.6 0.2 2 23 976 998 975 998 0.97 18 30 1.4 79 4.1 1.0 1 23 1016 1038 1016 1038 0.91 19 30 0.1 6 7.7 3.3 1 23 1045 1067 1045 1067 0.97 20 30 0.007 0.41 11.3 4.5 2 23 1078 1100 1077 1100 0.94 21 30 0.0022 0.13 12.9 0.4 1 23 1122 1144 1122 1144 0.97 22 30 9.9 5.8e+02 1.4 3.9 2 23 1187 1209 1186 1209 0.94 23 30 0.003 0.18 12.5 1.7 2 23 1225 1246 1224 1246 0.94 24 30 0.36 21 6.0 4.0 5 23 1256 1274 1253 1274 0.94 25 30 0.013 0.77 10.5 1.2 2 23 1285 1307 1284 1307 0.95 26 30 0.68 40 5.1 3.4 2 23 1324 1342 1324 1342 0.89 27 30 5 2.9e+02 2.4 2.1 2 20 1346 1364 1345 1366 0.90 28 30 0.11 6.4 7.6 0.7 2 23 1418 1439 1417 1439 0.94 29 30 0.0065 0.38 11.4 0.2 2 23 1450 1472 1449 1472 0.96 30 30 2.1 1.2e+02 3.5 0.3 3 23 1489 1506 1488 1506 0.78
Sequence Information
- Coding Sequence
- ATGGCACTCAAGTTGGGAAAATGCAGACTCTGTCTCAAGCTTGGAGACTTTTACTCCATCTTCACGATGAACGACAACTTGCAGTTAGCCGAAATGGTTATGGAGTGCTCAAAAGTGAAAATTTACGAAGGAGATGGTTTACCGGACAAAATCTGCTCCGAATGTATTCAAAAGCTCAGCAGTGCGCATATATTCAAACAACAGTGCGAACGGGCGGATGAAGAGCTTCGGCGGAACTATGTTCCACCGCCAGGATTCAGTGTATCACCAACGCCACCAACAAGACAGAGCAGTGATTCCGCTTTCTCAAACAACACAGATGTATCGAACAAACCTTCATCGTCGGCCGAGACGCTTACCACTCCGGTTAGTCGTAATCGCAAGAGGAGCCACGAAAGCCTTGACAATGCTTCCACGAGCAGCCAATCTCACGACAAACCTGGCTCTACTAAAAGGGTTCAGGAGCTTAGAAAATCACAAAAGCCTACAAAGCGGTCTAAAACGCAGTACTATACGGATTCCGACTACGATTGTAACAGTCCATCGCAATTTTCCATCGAAACGGATTCGGATGATTTTTTGGAGCACAAATGTAAGGAATGCGGCAAACGGTTCGACAGCAGCCGCGGTCTGATAAATCACATGAGGATGcacgaaaaagaaaaaaaggacAAAGCAATGATTGAAAAGCAGGAATCGCGCGGAAGCGAAACGGAACACAGTGAAAGTAAAATGAAACTAGATTCTTATCGCGATAATGAAATGGTTCCGACGAAACCGTTGGAGGACGCAAAGGACTCGGACGATAAGCTGAGCTGTGAAAGATGTGGGAAGACTTTTAAACTGAAAATAATGTTGAAGCGACATCACGATGTGTGCACAACTCCGCCTATGAAGGAGCTCAAAGTATCTCTCGAGCCCATTGACGGGAAAATTCCAGTCAGTCCCGCCACGACAATTGAGTGCGAAATATGCAAAGCTAAATTCAAAACTCCAGAAAATCTGGATAAGCACTTGAGAGTGGTGCACGCGGCCGCACCAAAAATTGAAAAGTCTACACCCAAAAAAGTTGAAAACGGCAAAATCGTTCTACCTTGCATGTACTGCAGGAAGCCATTCACGGATTACTACTCTCATAACGCCCATTTCAACGCGTGCTGTAAGGAAAAGTACAACGGATTCTTTGACTGTCCTTTGTGTCATAAAATGGTGTCAAAGAAAGCGTCTTACTTCCTCCATATTAAGGGGCATTTCATGGCGCCGGCATCTTCACCGGCACCTGCCGCGTCGGCGTCATCAGATTCTAAAAAGAGTTTAGAATGTAGGATTTGCAAGAAAAAAATGGCATCTGAACAACAGTTGGTGACTCATTTAGCCGCTCACATGTCTAATATGGATAATCCTGAGGATGATAACTCaagGGGCAGTACGTTCGACGATGCGGCATCAGTGCAGTCGGAGTATAGCAGCTCGATGATTACAACCGGTCCGCTCCAGTGCAAGATTTGCGACAAGCGGTTTACGTACAAGAAGGCGCTGGACACACACATCGCCAAGCACTCGGAGGATGGGACGAACGTAAAGGCGGAGCCGCCGGACAAGGACCCGGACGAGTCGGCGGATCTGTTGACCGAGGTCGATCACGACACCAGCGCGCAGCAGGAGTCCGGGCAGGAGTCGGACTCGAGCCAGGAGGGAGATGACAACACGTGCGATATTTGCGAGAAGCAGTTCTCGTACAAGCGTCTTCTGATCCAACACAAGCGGACGAAGCACCCGATGACAGCTGGAACGAAGCGAGCGAAGGTGAACCTGAAAAGCTGCTCGGTCCGCTGCCTCATCTGCGACATCGAGATGAAAGTGAGCGATATAAACGAGCACAACCAGACGCACATATCGGTGAACATAAAGCCGAGGAATCTGTACACGTGTATGCTGTGCGAGGAGAAGTTCAAGAGCTGCAGCTCGTTGGCCAACCACATAAAGTTGGTGCACCGGCTCAAGCAGCCATCGTCGGCCAAGCGGCGCGGAGCGCAGCCGAATCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGACGAGCTCCAGAGTCACAACGGCTTTGGTGAGGTTTCCGCCGCGGACGGCCGGCCGCTGGTCAATCTCAGCGGGTTCACGTGCCACATCTGCAGCAAGCAGATGCCCACGCTCATCTCGTTGAATCGACACGTCAACTGGCACACAAACGTCGGCAACAATATTGAGAAGAAGTACGAATGTATGGTCTGTAAAgagGTATTCCGGTTCCAGTGTCACTACAAAATGCATATGCGTGTGCATTACAAGGACACGAACCTGGATCCCAAGCTTCTGACGTGCTCCATCTGCAACCGCCGCAGCAAGCACCTTCGCGCTGCGCAAGCGCACATGAATTACCACAAGCAAACCCGCTTCAAGACCAAAGACTATGAGTGCTCTATCTGCAAGCGTGTCTTTCAGTACCGAAAGGTATACCTCTCTCATATGGCCATACATTATAAGAAGGGAGACAGCGCTAACAACACTATAGTAGGGTCGGAACTTCCCACTACAGCGGACCGAACGGTATTCGACGGAACTCACACTTGCCACATATGTAATAAAGTATGTGACTCTGAGTCGTCCCTTAAACACCATATAATTTGGCACAGCTCCAAGACTCTGCTCTACGGCAATCGCCACGAGTGCCACATATGCAACCTCGTTTTTACGAATAAAAAAAGGATGGAGGTCCATACGCGTGAGCACTTCGAAGACGATAACGGTCCTTACAAGTGCCACATATGTGGCAAGGGGTACATCGATGAAGACTATTTCAAGCGTCACGTGAAGGGACATAACTTCGATCACCAGTCACACAAGAAGCGGATAGAGAAGTTGAGAAAGGATAAGGTGAAGTGCCCAATCTGTACGCGATACTACCCCGACCTCGTCAAATTGATCCGACACTTGCGAAGAACGCATCCAGAGAGCAAAATGATCAAGGAAGACCCCGATGCACCGCCGCCAGCCTATTTCTCTTGCAAACTGTGTGCTAAGGTGTTCCTCGACGAACGAAGACTCCAGCACCACGAGGAAGCCCACTTGAGAAAGCCCGAGTTCTTCAAGTGTAAGTTCTGTGGAAAGAAAACGATTTCATTGAAGAATCACAACGTTCACATCAAAGGACACTTGACTCAAAAGTTCTTGGACAACCCATTGAGCTGCCCGCATTGCGATGAGAAGTTCACCAAGGGCTACCACCTACATTATCATCTTCGAGACGTCCATGAAATCAACGAAACCTGGATCGCAGACCGCACCACGCAAACGCTAAACGGCCCCTTGAAGGAGTTCCAATGCTCCATCTGCCTCAAGATCCTAGCCAGCAAGGGCAACTTTGAGAGACATTTGGATTATCACAACTCTTTACGGTGCAACTATTGCTTTGATTACTTCAGTTCCTTAAGATTTTTGGAAGGTCACTTAACTTTCAGCTGCGAGAAGAAGAAACTTATAGGAGACACAGAAATTTATCCCCGGAGGATAAAGTGCCAGGTCTGCTACAAAGCTTTCCATTTGCAAGTGAAGTTGGATTGCCATCTAAGAACTCAACATGGCATTAAAGTATTCAAGGAAGCCTCTGAGGATGCAAAGAATTGTATATGTGACTACTGTTTCAAAGTTTTCGAAAACGAATATGCTCTCAACACGCATAAGATATACCATCGAACTATTGGTTATTACGGATGCATCTACTGCGATAGGAAATTTAACACCCTGACGACGTATcgaaaacataaaaatcatCACTTCTCACAACTAAACGTCGACAATCCGACCAAGTGTGAGCATTGCGACGAAACATTTGTAGCATTCAGACAGATGATTTATCACATGAGAGACGACCACGGGGATGACAAGGAATGGATAATTTTGCCCAAGGAGTCCACGGAGGAGAAGTGTTCGATTTGTAACAAAGTATTCTTCAACTTGCACCGACATCTCGATTACCACGAGGAGAATAAATGCAAGAAATGCAACGAATACTTCTACTCAACTTTGGACTTCGACAACCATCTGTGCGCCATCGACTCTGAGGACGACGAAGCGTATGTAAACACAAGCACTGGCGGCAGGAACGTGCCCAAGTATGAGGAGTGTCGCTTCTGCTTCAAGCCCATCACCAAGGCGGGTTCTGTTCTCAAGCACGACCAGATACACAGGAGTTCCGGCTCGATATCCTGTCGGTTCTGCGATTTGAAGTTCAAGACGATGGACGCATTCAACATCCACGCGTTCTCGCACCGCAATCGAAAGTACAACAAGAAGCCGATAAAGTGCCGCGACTGTGGCGAAAAGTTTGTTAAATACGGCCCCTTCATCAAGCACGTGAAGTCGGTGCACAAGAACTTGAAGAAGCTTCACTACCGAGCGGTGGTTAAGGAGGAACCGTGTGTGATCTGCGGGGAAGAGTTCCCAAATCTTCATAACCACTACCGAGCCCACCTCCAGCACCAGTGCCAGCAGTGTCACAAGTACTTCACATCCTTCAAAGTGTTTTCAAATCACGAGTGTGATAAGGAGGACAGCGAACCGTCCAAAGTGTTCACCAGTGATGTTGACTTGCCTGCTCTGATTAACTCCTACGTCCCAAAAGATGTGAGGGACGACGAGAAATACTACGGCTAcactgatgatgatgaggagGAGGAGACTGTTCCTGAGGCCACTGAAGAGGGGAAAGAAGAGTTGGAGAATAAGCCGATGCTATTCGATGATAGCACTCAAATCACATTGGATGAGGACAGTCAGAACTCTGTAGACGAGGAAGAAACTAATATGCACTCTATGGTCCATGCACCCATCATATCTGATGTCCTATCACTTTACAAGAAAAAGGAGGAACCTGGTCCTTCAGCGcaagctgatgatgatgatgatgtggtAAATTTGATTGATGATGATTCTGTTGGTTTTGAGGAAACTGTTTTAACTGTCATAACAATTGAAGATTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTMNDNLQLAEMVMECSKVKIYEGDGLPDKICSECIQKLSSAHIFKQQCERADEELRRNYVPPPGFSVSPTPPTRQSSDSAFSNNTDVSNKPSSSAETLTTPVSRNRKRSHESLDNASTSSQSHDKPGSTKRVQELRKSQKPTKRSKTQYYTDSDYDCNSPSQFSIETDSDDFLEHKCKECGKRFDSSRGLINHMRMHEKEKKDKAMIEKQESRGSETEHSESKMKLDSYRDNEMVPTKPLEDAKDSDDKLSCERCGKTFKLKIMLKRHHDVCTTPPMKELKVSLEPIDGKIPVSPATTIECEICKAKFKTPENLDKHLRVVHAAAPKIEKSTPKKVENGKIVLPCMYCRKPFTDYYSHNAHFNACCKEKYNGFFDCPLCHKMVSKKASYFLHIKGHFMAPASSPAPAASASSDSKKSLECRICKKKMASEQQLVTHLAAHMSNMDNPEDDNSRGSTFDDAASVQSEYSSSMITTGPLQCKICDKRFTYKKALDTHIAKHSEDGTNVKAEPPDKDPDESADLLTEVDHDTSAQQESGQESDSSQEGDDNTCDICEKQFSYKRLLIQHKRTKHPMTAGTKRAKVNLKSCSVRCLICDIEMKVSDINEHNQTHISVNIKPRNLYTCMLCEEKFKSCSSLANHIKLVHRLKQPSSAKRRGAQPNLADFCEVVVTKAEPLDELQSHNGFGEVSAADGRPLVNLSGFTCHICSKQMPTLISLNRHVNWHTNVGNNIEKKYECMVCKEVFRFQCHYKMHMRVHYKDTNLDPKLLTCSICNRRSKHLRAAQAHMNYHKQTRFKTKDYECSICKRVFQYRKVYLSHMAIHYKKGDSANNTIVGSELPTTADRTVFDGTHTCHICNKVCDSESSLKHHIIWHSSKTLLYGNRHECHICNLVFTNKKRMEVHTREHFEDDNGPYKCHICGKGYIDEDYFKRHVKGHNFDHQSHKKRIEKLRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPAYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHNVHIKGHLTQKFLDNPLSCPHCDEKFTKGYHLHYHLRDVHEINETWIADRTTQTLNGPLKEFQCSICLKILASKGNFERHLDYHNSLRCNYCFDYFSSLRFLEGHLTFSCEKKKLIGDTEIYPRRIKCQVCYKAFHLQVKLDCHLRTQHGIKVFKEASEDAKNCICDYCFKVFENEYALNTHKIYHRTIGYYGCIYCDRKFNTLTTYRKHKNHHFSQLNVDNPTKCEHCDETFVAFRQMIYHMRDDHGDDKEWIILPKESTEEKCSICNKVFFNLHRHLDYHEENKCKKCNEYFYSTLDFDNHLCAIDSEDDEAYVNTSTGGRNVPKYEECRFCFKPITKAGSVLKHDQIHRSSGSISCRFCDLKFKTMDAFNIHAFSHRNRKYNKKPIKCRDCGEKFVKYGPFIKHVKSVHKNLKKLHYRAVVKEEPCVICGEEFPNLHNHYRAHLQHQCQQCHKYFTSFKVFSNHECDKEDSEPSKVFTSDVDLPALINSYVPKDVRDDEKYYGYTDDDEEEETVPEATEEGKEELENKPMLFDDSTQITLDEDSQNSVDEEETNMHSMVHAPIISDVLSLYKKKEEPGPSAQADDDDDVVNLIDDDSVGFEETVLTVITIED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -