Cpal017240.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000429.1:9872-17553[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00029 0.017 15.7 3.3 2 21 155 174 154 175 0.94 2 28 9.5 5.6e+02 1.5 0.4 3 23 183 203 182 203 0.88 3 28 2.5 1.5e+02 3.3 1.4 1 23 208 231 208 231 0.94 4 28 0.0014 0.081 13.5 3.8 2 23 237 258 236 258 0.95 5 28 0.04 2.4 8.9 2.5 2 21 262 281 261 282 0.93 6 28 0.0053 0.31 11.7 0.3 2 23 326 348 325 348 0.93 7 28 0.0033 0.19 12.4 1.0 1 23 380 402 380 402 0.98 8 28 0.002 0.12 13.0 1.9 1 23 408 431 408 431 0.97 9 28 0.029 1.7 9.4 1.2 1 23 439 462 439 462 0.93 10 28 0.0011 0.064 13.9 1.8 1 23 474 496 474 496 0.98 11 28 0.051 3 8.6 0.2 2 21 612 631 611 632 0.94 12 28 0.084 4.9 7.9 1.7 3 23 638 658 637 658 0.95 13 28 0.3 17 6.2 2.0 2 23 664 685 663 686 0.94 14 28 0.0051 0.3 11.8 0.0 1 23 691 713 691 713 0.96 15 28 0.47 27 5.6 3.3 1 20 716 735 716 737 0.94 16 28 0.00033 0.02 15.5 1.8 1 23 751 774 751 774 0.96 17 28 0.0046 0.27 11.9 0.2 1 23 780 802 780 802 0.96 18 28 0.086 5 7.9 0.3 1 23 835 858 835 858 0.88 19 28 0.055 3.2 8.5 1.4 3 22 868 887 867 887 0.96 20 28 0.00057 0.033 14.8 2.1 1 22 989 1010 989 1013 0.90 21 28 0.0022 0.13 12.9 0.3 2 23 1044 1066 1043 1066 0.95 22 28 2.9e-05 0.0017 18.8 1.0 2 23 1072 1093 1071 1093 0.96 23 28 0.43 25 5.7 2.1 3 21 1098 1116 1097 1117 0.93 24 28 2.6e-05 0.0015 19.0 0.5 1 23 1143 1166 1143 1166 0.95 25 28 0.00012 0.0068 16.9 0.4 1 23 1172 1194 1172 1194 0.97 26 28 0.087 5.1 7.9 0.1 1 23 1200 1222 1200 1222 0.97 27 28 0.0095 0.55 10.9 0.4 1 23 1228 1251 1228 1251 0.92 28 28 0.00051 0.03 14.9 1.5 2 23 1258 1280 1258 1280 0.97
Sequence Information
- Coding Sequence
- ATGAAGAGGGAAGTTGATGTTAAGGCCCTAGTGTCCCATGTAGTGAAAGGAGATGGAATCGACAAATGCAGGATTTGTATGGGCGATACATCCGAAGGGCAGGTTTATTTGGGAGACACAGTAATGATGGATGGCGAAAAACCTGTAACTTTGTCGGAATTACTAGAAGCAATCACTGGAGTTGAGCGGTGGTTGCAGGTGCGGCCACACGACCTCCTCCCGGGCGGGCTGTGCTCGGCCTGCACCACCTCCGCGCTGACCGCGGGTCACTTCCGCGCCCTCTGCCGCCAGGCCTCCGACCGCTGGGAGGCCGCCGTCACGCTCCTCTCCAGCATCCACCGCCTGACTGTGAGCAAAAGGGCCATACTGATCGTCCTCGGGGAGAACGAGATTGACGTAGTTGACAGGTACAAGGAAAAGGAGGCGAAGACTGAACGGACTAAACGAGTCCTCAAGGACTGCCAGTGTTCTGAGTGCGGGAAGAAGTTTCGGTACCCACAGCAACTGCATCAGCACCTGAAGGAATCGACGGACTTCAAACGCGCCTGCCACATATGTGCGCGAATCATGACGAGAGACGAGCTGGTGTTGCATATGAAAGACGAGCACGGGAGGAAGCCTTACGACTGTAAGAGATGCCCCGCGCTGCTCCACTCTTACAGCCAGTTCAAGCGGCACGCGATTAAGGCGCACTCGAAGGGATCGTGCTCCTGTGGGGACTGCGGCCGCAGCTTCCAGTCCCCGCACGCCTTCCACGCGCACCAATCCGTCCACAGACTGAAAACGTGTCCCGGCTGCGATAAGCTGTTCCGGAACCAGACTTGCTACTTCTACCACGTGAAGAGGTGCTGCAACCTGGACGGCAGTAGGCAAGACACGCATCGGACAAAGCACAAAGTCTTCGTCCAGGTGGAGAGTCGTGTGAGCGACAAGAAAATCAAGGTCGGTCTTCGCGGAAGCGCCGACAACGAATGCATTTGCGATTATTGCGGCAAAACGTTCGCCGGGAAGAGGTTTGTGGGCGCGCACATTCAGATAGTTCACACGAAGAACACGCACAGGCCGTGCGTGCATTGCGGGAAGTTGCTCGCGGCCGCTCACATGACGGAGCATGTTAAGTCGCACGGGCCGAGGTCGTTTAAGTGCGAGCACTGCGGCGTTGTGTTGCGGACGAAACTTGGTTACGTCCAGCATCTGCGGCTCCACACCGGCGAGAAGCCGTACGAGTGCCAGCATTGCGGCGAAACGTTTTCGGCGTCGTCGCGTAAGTCTGAGCACATTCGAAAGATGCACAAGGCTGTGGTGGAGTTGAGGCATGCGTGTAAATTCTGCCCCGCGCGGTTCCGTTTGCCGTATAGGCTGAAGAAGCACGTTGCATCTATGCATAGCACGGAGGTGGACGAATCGGTGAAACTGCTGTTCGAATGCCAGGAGTGCAACGAGAAGTTCGCGTCGTACCGCGGACTGCTCCACCACGGACGGAAGCACCAAGGGTTCATGGTGAATAGGAAGGTCAAGAGAGACGCCAAGTTCAAAGTCTCCACCAGCGTCTGGGAGGAAACAGGTCTGCCGCGAGGAATATGCCGCGAGTGCTATGAGCCCGTCAGAGCGGTGCTGGAGCTGAGGACTCTCGTCAGGGATGCCGTGCGTCAGTGGGCCCTCGCCGTCACCAACCTGTACCAGACAATCGACAGGACCTCTACCAAAATTTCCGATAAACCAAAAGACACGGCCACCCTCTCCCAACCGTCACTCTGCGAGCTGAGGATCATGCCCCAAAAAAAGTCCAAAAGAAAATCCCGTAACCTCAACCCCCGCAACTTCGACGACATCAAGTGTCGCGACTGCGCCATGAAGGTACCAACGCCGTACCATCTGAACCAGCATTTGAAGAGCTCGAACTTCCGCGCCTGCACTGAGTGTTGTATTGTCTTCCGAAAGGAGAACCTTCGCAGGCACTTGTTGAAGGCTCACGCTAAACAGGTCTGGTCCTGCAGGAAGTGCTATCAGCTCTTCGACGAGAAGACGAGCTTGGGCAGTCACATGAAGGTACATCACGGTCCGGACAGTCACGAGTGCGAGGAGTGCGGCATGGGTTTTGCGATAGCTCGGGCGTTGCGGGCCCACGTCTACAGCCACAGGCTGTTCAGCTGTCCGTCCTGCAGCGCCAGCTTCGAGAACCAGAAGTGCTTCAAATACCACCGGAGCCAGTGCGATAAAACGCCCGCCAAAACGGAACCGGATACGGTATACGAATGTGACCACTGCGGCAACAAATACACGAAGAAGCCTTCGCTAAGAATCCACATGATACAGAAGCATTTGAACGTTCTTCCATTCGTCTGTCAAGTTTGCGGGAAGCGGAGCTCGAACTTGGGCCACGCGAAGGCTCATGAAGCCATCCACGAGGCCAGGAAGATATACGAATGCCACTGCGGCGCAAAAATGCAGACGCGGATAGGGTATGTTCAGCACCAGCGGATCCATACGGGGGTGAAGCCATACGCCTGCTCGGAGTGTGGGCAAGGGTTCATAACTGCGTCGAGGCGGCTGGACCACTTTCTGCGGAAACACGGCGGCGTTGGGGACCGGAGGCACGGGTGCGAGCGCTGCTCGGCGAGGTTCTACAGGCCCTGTGACCTCAGGAAGCACAGGATGACCGTTAAACAAGAGACGTTTTTTCCCCAAGGCCTTTGCTCCATCTGCACCAGCGCCGCCATAGCCGCCTTCGAGTTCAGCCTTTCCGTCCAGAAGTCCAGCTGTCTGTGGTCAAACTGCCTCAACTCCCTCTCGGTCCTCCCTGAATCCGCGGCATCCTCCTTATACGTTGTGGTCCGAGAAGACATGTCGCTGCATGCCGTCAGCACTTTCGTCGGAGACACGGCGGACTTGTTAGATATTCTGCTGAAGAAGAGGCAGCCTTCAGAGAAGCGGGTGAAGCGTAAAGGTCGGCCCGGGCCGCCTTGCAAGTGCCCCGACTGCGGGAAGGAATACCCCAGCCCGTGCTACTTGAATTTGCATTTAAAAAACAGCGGGCACAAGGAGGCCTGTTGGTTTTGCGGCGTCGTCCTCGGTAGGGGCAAAGAGATGAAGGAGCATCTGGCCAAAAAGCATAGACTTCAAGCGATATCGTGTCCGAACTGCCCAAAATTGTTCACGAAGGAAATAGACTTGAAGCTCCACTTGAAGAACAGCCACAAACCTGGTGCTCTGACGTGCGGAGATTGCGGGAGATCGTTCACGAGACAGTCGTCGTTCGATACTCACTCACAGATGCACGCGGTACGGATATGTAGGTCTTGCGGTAAACAGTTCATGAGTCGCGGCTGCTACAGGGTGCACCGGAAGTCTTGCGAGCCGGAAGCGAGGCCGGACATTAAGAAGGTTCCGCGGACGAAGCGCTCGAACATTCGGGACCCCTCGACGTTTACGTGCGACTATTGCAAGAAGACCTACCGTTCGCGGCCCCAGCTGGCGAACCACATCCTGTGGGTGCACATGGACGTGCGTCCGCACCAGTGCCAGTGGTGCGGGAAGCGGTTCTACACGGCAGCCAGGCTGGCGGAGCATATGGTGGTTCACACCAGGGAGAGGAACTTCGAGTGCGATATATGCGGGATGAAACTGGTCTCGCGCATGGCGGCGGTGTATCACAGGAGGAGGCATACTGGGGAGCGGCCGTATGAGTGCGAGGACTGCGGCGAGAAGTTCATATCGGCGTCGCGGAGGTCGGAGCACGGCAAGCGCAGGCACGGGAAGGGCGTGCGCAGACAGTGCACGCAGTGCCCGGCGAACTTTGTGAGGACTCATGAGCTGAGGAAGCATATGGAGAAGGCTCACGGCTTGGAGAAGAACCCTTGTGGATAG
- Protein Sequence
- MKREVDVKALVSHVVKGDGIDKCRICMGDTSEGQVYLGDTVMMDGEKPVTLSELLEAITGVERWLQVRPHDLLPGGLCSACTTSALTAGHFRALCRQASDRWEAAVTLLSSIHRLTVSKRAILIVLGENEIDVVDRYKEKEAKTERTKRVLKDCQCSECGKKFRYPQQLHQHLKESTDFKRACHICARIMTRDELVLHMKDEHGRKPYDCKRCPALLHSYSQFKRHAIKAHSKGSCSCGDCGRSFQSPHAFHAHQSVHRLKTCPGCDKLFRNQTCYFYHVKRCCNLDGSRQDTHRTKHKVFVQVESRVSDKKIKVGLRGSADNECICDYCGKTFAGKRFVGAHIQIVHTKNTHRPCVHCGKLLAAAHMTEHVKSHGPRSFKCEHCGVVLRTKLGYVQHLRLHTGEKPYECQHCGETFSASSRKSEHIRKMHKAVVELRHACKFCPARFRLPYRLKKHVASMHSTEVDESVKLLFECQECNEKFASYRGLLHHGRKHQGFMVNRKVKRDAKFKVSTSVWEETGLPRGICRECYEPVRAVLELRTLVRDAVRQWALAVTNLYQTIDRTSTKISDKPKDTATLSQPSLCELRIMPQKKSKRKSRNLNPRNFDDIKCRDCAMKVPTPYHLNQHLKSSNFRACTECCIVFRKENLRRHLLKAHAKQVWSCRKCYQLFDEKTSLGSHMKVHHGPDSHECEECGMGFAIARALRAHVYSHRLFSCPSCSASFENQKCFKYHRSQCDKTPAKTEPDTVYECDHCGNKYTKKPSLRIHMIQKHLNVLPFVCQVCGKRSSNLGHAKAHEAIHEARKIYECHCGAKMQTRIGYVQHQRIHTGVKPYACSECGQGFITASRRLDHFLRKHGGVGDRRHGCERCSARFYRPCDLRKHRMTVKQETFFPQGLCSICTSAAIAAFEFSLSVQKSSCLWSNCLNSLSVLPESAASSLYVVVREDMSLHAVSTFVGDTADLLDILLKKRQPSEKRVKRKGRPGPPCKCPDCGKEYPSPCYLNLHLKNSGHKEACWFCGVVLGRGKEMKEHLAKKHRLQAISCPNCPKLFTKEIDLKLHLKNSHKPGALTCGDCGRSFTRQSSFDTHSQMHAVRICRSCGKQFMSRGCYRVHRKSCEPEARPDIKKVPRTKRSNIRDPSTFTCDYCKKTYRSRPQLANHILWVHMDVRPHQCQWCGKRFYTAARLAEHMVVHTRERNFECDICGMKLVSRMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHGKRRHGKGVRRQCTQCPANFVRTHELRKHMEKAHGLEKNPCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -