Cpal007836.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000100.1:217868-230354[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0076 0.45 11.2 3.7 1 23 297 319 297 319 0.97 2 24 0.0013 0.074 13.7 1.0 1 22 326 347 326 349 0.90 3 24 0.0011 0.065 13.8 5.4 1 23 380 403 380 403 0.98 4 24 0.00052 0.031 14.9 0.2 1 23 407 430 407 430 0.95 5 24 0.00052 0.031 14.9 0.2 1 23 465 488 465 488 0.95 6 24 0.00052 0.031 14.9 0.2 1 23 523 546 523 546 0.95 7 24 7.4 4.3e+02 1.8 0.3 10 23 563 577 561 577 0.91 8 24 0.00052 0.031 14.9 0.2 1 23 581 604 581 604 0.95 9 24 0.00052 0.031 14.9 0.2 1 23 639 662 639 662 0.95 10 24 0.00052 0.031 14.9 0.2 1 23 697 720 697 720 0.95 11 24 0.00052 0.031 14.9 0.2 1 23 755 778 755 778 0.95 12 24 0.00052 0.031 14.9 0.2 1 23 813 836 813 836 0.95 13 24 7.4 4.3e+02 1.8 0.3 10 23 853 867 851 867 0.91 14 24 0.00052 0.031 14.9 0.2 1 23 871 894 871 894 0.95 15 24 0.00052 0.031 14.9 0.2 1 23 929 952 929 952 0.95 16 24 0.00052 0.031 14.9 0.2 1 23 987 1010 987 1010 0.95 17 24 7.4 4.3e+02 1.8 0.3 10 23 1027 1041 1025 1041 0.91 18 24 0.00052 0.031 14.9 0.2 1 23 1045 1068 1045 1068 0.95 19 24 0.00052 0.031 14.9 0.2 1 23 1103 1126 1103 1126 0.95 20 24 7.4 4.3e+02 1.8 0.3 10 23 1143 1157 1141 1157 0.91 21 24 0.00052 0.031 14.9 0.2 1 23 1161 1184 1161 1184 0.95 22 24 0.00052 0.031 14.9 0.2 1 23 1219 1242 1219 1242 0.95 23 24 0.00052 0.031 14.9 0.2 1 23 1277 1300 1277 1300 0.95 24 24 0.00045 0.026 15.1 0.3 1 23 1314 1337 1314 1337 0.96
Sequence Information
- Coding Sequence
- ATGTGCCTCGCTACAAATGTTAATATGTTTGACATGAAGGACAACTTGGTCACTCAATATGAACAAATCACTGGGTTAAAGATAGAAGATGCTTCCCAGTTCCCGAAAATGCTCTGCTGGGAATGTGCCCACCGCCTGGACTCCTGCCACAAGTTCATGGCACGCGCTGTATTGGCCCACTGCCTGATGGAAGATCTACTGAAGGCAGATGGATTTATCACCGAGGCGAATATAAGTAAAATCAAAAGAACGGAACTCGGATTGCATACCCGACTTGTAGAGAATTCAGCACTTTGTGTTAGCATAAATGGTGATTCTTCTGAATCTATTGATGAAGACTTGCATAATGAAGAGGACGAGATAACTGTTGACATAGCGCCGACTGAAGTGGATTGCTTAGCAGACGAAATCAAAATGGAAATAACTAGTATTGAAAAAGACGACTTTTTAGTAGATGATTTGAAAGTGGAAGAAGTAATCGATTTAGATGAAGATCCTAGGAGCATAAGAGCAGAACAATTGCCGATTGAAAATGTAAAACATGCACAAGTGTTGTGTGAAAACAACGAAAAAGACTACTTTTTAGTAGATGATTTGAAAGTGGAAGAAGTAATCGATTTAGATGAAGATCCTAGGAGCATAAGAGCAGAACAATTGCCGATTGAAGATGTAAAACATGCCCAAGTGTTGTGTGAAAACAACATAACCGATTTAAGTTGTCACAATTCAGAGGATGACAAAAATATTGAATGTAATGTTAAGAAGAAACGAAAAGTGAATATGGAATTAGAAGAAATTAAGGGTATGTCTATTAAAAAGTTTACTTTCGAAGAGCAAATGCAGGAAATAAACATGAGAAAGGATTCTAGTAATTATAAGACATCACAGTTTAAATGTGAGTTTTGTTTTAGAGGTTTTCGTGATCAGGAAACTTTTAAGACACATTCTTTGAAGCATTCAGAgCGGAACGGACCGTATGAATGTGAAATATGCAAGTTGCGTTACAGGAGTTCCAAAGACTTGAAGCAACATAAGGGAAACCTACACACGTACAAATACAGTTGCGAGCAATGTCCTTTCCATTGCTTGGCGAGACACATGGCGCAAGCGCACGTCAAATTTCACGAGGGTGTAACTTACAAGTGCCGCCATTGTGAGATGGTATTCagACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACATCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGTTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACATCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACATCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACATCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATTGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTgtgagcccatccatccatccatccgttcCTTGCAGACATAGGACGACGTACCAGAGCCACGTCCGCATCAAGCACCCGTCGCGCTTCGCGTGCAAGCTGTGCGGGCGCTCGTTCATCGGCCAGAAGGGGCTCGAGCAGCATGGCCGGCTCAAGCACCGCTTCGATGACACCCCTGCGTCGCCGTCGTCGGAAGCCCACCGGTGTACTGAGTGCGAACTGGCGTTCGCCACCAGCGACGCGCTCGCCACGCACCTGGAGAAGAACCACAACATACGGTTAGAAGCCGAGAGCGCCTCGAAAGCAGGAGCTGAGAAGGAGAACTGCAAGGGCTGGTGGTCAGGAGGGGAACATtgcagcgtggcgggtcgggagccgaccggcgtgtgccacgcctgtgggtgtccagaggacacagcggagcacacgctggcggaatgccctgaatgggcggagccgcgggcgacgctcgcggcggtgattgggggcgacctgtcgctgccgggcgtcgtgaaagccatggtcggcagcgacagagcgtggaaggcggtgctccgattctgcgaggcagtaatggcgcagaaggaggcggcggagcgggtgagggaagacgaccctctgtccaacccaatccgccgtaaaagagtgggccggaggcgcctggcgcatgagcgccgccttcccccataa
- Protein Sequence
- MCLATNVNMFDMKDNLVTQYEQITGLKIEDASQFPKMLCWECAHRLDSCHKFMARAVLAHCLMEDLLKADGFITEANISKIKRTELGLHTRLVENSALCVSINGDSSESIDEDLHNEEDEITVDIAPTEVDCLADEIKMEITSIEKDDFLVDDLKVEEVIDLDEDPRSIRAEQLPIENVKHAQVLCENNEKDYFLVDDLKVEEVIDLDEDPRSIRAEQLPIEDVKHAQVLCENNITDLSCHNSEDDKNIECNVKKKRKVNMELEEIKGMSIKKFTFEEQMQEINMRKDSSNYKTSQFKCEFCFRGFRDQETFKTHSLKHSERNGPYECEICKLRYRSSKDLKQHKGNLHTYKYSCEQCPFHCLARHMAQAHVKFHEGVTYKCRHCEMVFRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHIRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHIRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHIRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHIRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHWTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPVSPSIHPSVPCRHRTTYQSHVRIKHPSRFACKLCGRSFIGQKGLEQHGRLKHRFDDTPASPSSEAHRCTECELAFATSDALATHLEKNHNIRLEAESASKAGAEKENCKGWWSGGEHCSVAGREPTGVCHACGCPEDTAEHTLAECPEWAEPRATLAAVIGGDLSLPGVVKAMVGSDRAWKAVLRFCEAVMAQKEAAERVREDDPLSNPIRRKRVGRRRLAHERRLPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -