Cpal000254.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Carterocephalus palaemon
Gene Symbol
-
Assembly
GCA_944567795.1
Location
CALYMS010000006.1:1886432-1899936[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0011 0.063 13.9 1.4 1 23 274 296 274 296 0.98
2 16 0.00044 0.026 15.1 2.3 2 23 304 325 303 325 0.94
3 16 0.098 5.7 7.7 1.5 1 23 329 351 329 351 0.97
4 16 0.00054 0.032 14.8 1.4 1 23 356 379 356 379 0.98
5 16 0.0012 0.072 13.7 0.2 1 23 383 406 383 406 0.94
6 16 0.012 0.71 10.6 0.1 2 21 418 437 418 438 0.93
7 16 0.012 0.71 10.6 0.1 2 21 444 463 444 464 0.93
8 16 0.012 0.71 10.6 0.1 2 21 470 489 470 490 0.93
9 16 0.012 0.71 10.6 0.1 2 21 600 619 600 620 0.93
10 16 0.012 0.7 10.6 0.1 2 21 652 671 652 676 0.92
11 16 6.3e-05 0.0037 17.8 0.3 3 23 685 706 685 706 0.98
12 16 0.11 6.4 7.6 0.2 2 23 726 748 725 748 0.96
13 16 3.5e-06 0.00021 21.7 0.4 1 23 759 781 759 781 0.99
14 16 4.3e-07 2.5e-05 24.6 2.8 1 23 787 809 787 809 0.99
15 16 0.087 5.1 7.9 3.2 1 23 815 837 815 837 0.96
16 16 2e-05 0.0011 19.4 0.2 1 23 843 866 843 866 0.98

Sequence Information

Coding Sequence
ATGGCAGAGCTGAAAGTGTGCAGGGTATGCCTTGTTACCGATGTAAAGTTGTATGACTTGCGATCGTACCCATTATGCACGTATTACGAACCAATTACTGGGGTCAATCCTCTAAGTGAGTTCACCCTGCCAACATTTGTTTGCTATGAGTGTGCTGCCTTGATCAAAAAGTTCTACTACTTCAGGGAGAAGTGCTTGAGGGGTCAATCAACCTTGTTTGCGATACTACAGTTTAATGACAAGATTACCACAGAAGAATTAAAGAGTATAGATAGACAGAATTTCTTCCTATCTCCAAGTCTTGTGATACAAAAAATACCTGAGGAGAGTATACACTGTGTGACACATGATGAGCGTGATATCAAATCAGAACCGTATGAGAAGGTGGACATTGGAAGACTTCCTAGCAGTGCGGAGGTAGATGATATTAAGCAAGAAGACTGCGGTGATGACTTTGCGGGGCTGTCCAGCGACAATGAAGATATTCCCCTCTCCCTCCACAAGACTAATAAGGTGAAGAAAGAGGTCTGCAAGAAGGTTAGGAAAAAGGAGAATGTAGAAGCAGATTCAACGGAACCCAATCTTGAACCTGCAGTAGATAGAGCGGTGAAGAAGGTGGTGAAGAAGGGCAAGCGCGGACGTCCGCGCaaggcggcggccgcgcgcgggCCCCGGTCGCGGCGCACGCAGAACACGGGCGGCGTGGTGGACGAGCAGCTGGACCTGACGGAGTTCGTCACCGTCATGACGCTCTCGATCGAAGAGCAGAAAGAAGAGATCCTGAAGAGACAGTTGTCGTCCAACTACCTGAACGCGCCCTACAAGTGCAGTCTATGCTTCAAGGGATTCATTGACACCGACGCCTGGAACCACCATATCAGCAAACACGATGTGAAAGCCGGCGATATGGAGTGTCCGATATGCAAGTTCCGTTTCAAGAGCAAGCGCACGCTGCAGAAGCACTCGTCCAACCACGGCAAGAAGTACGCGTGCAAGTCGTGCACGTACGTCTCAAAAACTACAACTCAGGCGAAACAGCACCAGCGATGGCACGAGGGGGTTACGTACAAGTGTCAATATTGCGATGAGACTTCCACGAAATGGACGTCATACCTGAGCCACGTGCGCATCAAGCACCCCTCGGAGTTCATCTGCGGCGTGTGCGGCTACTCCTTCGTCAGCAAGCTGGGCCTCACCATGCACAAGACGATGATGCACAAGGATGTCGTCGCGAAGACAGAGGAGGGTCCGTACTGCGAGCAGTGCGACGTGCGCTTCATATCGGAGGAGGCGTGGAAGCGGCACATGGCGAAGACAGAGGAGGGTCCGTACTGCGAGCAGTGCGACGTGCGCTTCATATCGGAGGAGGCGTGGAAGCGGCACATGGCGAAGACAGAGGAGGGTCCGTACTGCGAGCAGTGCGACGTGCGCTTCATATCGGAGGAGGCGTGGAAGCGGCACATGGCGAAGACAGAGGAGGGTCCGTACTGCGAGCAGGGCGACGTGCGCTTCATATCGGAGGAGGCGTGGAAGCGGCACATGGCGAAGACAGAGGAGGGTCCGTACTGCGAGCAGGGCGACGTGCGCTTCATATCGGAGGAGGCGTGGAAGCGGCACATGGCGAAGACAGAGGAGGGTCCGTACTGCGAGCAGGGCGACGTGCGCTTCATATCGGAGGAGGCGTGGAAGCGGCACATGGCGAAAGCAGAGGAGGGTCCGTACTGCGAGCAGGGCGACGTGCGCTTCATATCGGAGGAGGCGTGGAAGCGGCACATGGCGAAGACAGAGGAGGGTCCGTACTGCGAGCAGTGCGACGTGCGCTTCATATCGGAGGAGGCGTGGAAGCGGCACATGGCGAAGACAGAGGAGGGTCCGTACTGCGAGCAGGGCGACGTGCGCTTCATATCGGAGGAGGCGTGGAAGCGGCACATGGCGAAGACAGAGGAGGGTCCGTACTGCGAGCAGTGCGACGTGCGCTTCATATCGGAGGAGGCGTGGAAGCGGCACATGGTCACCTCCGTCAAGCACACCGAGGGCAACAATCTCAACGGGTGCCGGGTGTGCGGCGAGTCGTTCGCGAGCCcggaggcgctgcgcctgcaCCACCGCACGGCGCACGCGCGCAAGCGGCCCAAGAACTACGGCAAGCCGCCCTCCAACACCACCTGGCCGTCGCCCTGCGAGCACTGCTCGGAAGTGATCCCGAACGCGCGCGATTATTGGACGCATTTCCGGCGCGCGCATCCCGACAAGCACTACCCCATCGAGAAGAACTATGTTTGTGACATTTGCGGGAAGAGCTTCCGGGGCAACGCGTTCCTAGTGTACCACAGGCGCACGCACTCGGAGAAGAAGGAATACGAGTGCACCGAGTGCGGCAAGGCGTTCTACAACCGCACCAACCTGCACGTGCACCGCCGCACGCACTCGGACGAGCGGCCGCACGCGTGCACCGTCTGCTGCAAGGCGTTCAAGGGCAAGGGCGCACTCGACCGACACTTCCGGAGCCACACGGGCGTGAAGCCGTACGAGTGCGAGGTGTGCGGCAAGGCGTTCGCGCAGTCCAACAGCCGCAAGCTGCACGTGCGCACCGTTCACCTCAAGGAGCCCTCGCCGTACATCAGCCGCAGCCGGCTCGAGAAGCGCAACCGGCACAAGGAGCAGCCCGCCGACTACCAGCTCTACTGA
Protein Sequence
MAELKVCRVCLVTDVKLYDLRSYPLCTYYEPITGVNPLSEFTLPTFVCYECAALIKKFYYFREKCLRGQSTLFAILQFNDKITTEELKSIDRQNFFLSPSLVIQKIPEESIHCVTHDERDIKSEPYEKVDIGRLPSSAEVDDIKQEDCGDDFAGLSSDNEDIPLSLHKTNKVKKEVCKKVRKKENVEADSTEPNLEPAVDRAVKKVVKKGKRGRPRKAAAARGPRSRRTQNTGGVVDEQLDLTEFVTVMTLSIEEQKEEILKRQLSSNYLNAPYKCSLCFKGFIDTDAWNHHISKHDVKAGDMECPICKFRFKSKRTLQKHSSNHGKKYACKSCTYVSKTTTQAKQHQRWHEGVTYKCQYCDETSTKWTSYLSHVRIKHPSEFICGVCGYSFVSKLGLTMHKTMMHKDVVAKTEEGPYCEQCDVRFISEEAWKRHMAKTEEGPYCEQCDVRFISEEAWKRHMAKTEEGPYCEQCDVRFISEEAWKRHMAKTEEGPYCEQGDVRFISEEAWKRHMAKTEEGPYCEQGDVRFISEEAWKRHMAKTEEGPYCEQGDVRFISEEAWKRHMAKAEEGPYCEQGDVRFISEEAWKRHMAKTEEGPYCEQCDVRFISEEAWKRHMAKTEEGPYCEQGDVRFISEEAWKRHMAKTEEGPYCEQCDVRFISEEAWKRHMVTSVKHTEGNNLNGCRVCGESFASPEALRLHHRTAHARKRPKNYGKPPSNTTWPSPCEHCSEVIPNARDYWTHFRRAHPDKHYPIEKNYVCDICGKSFRGNAFLVYHRRTHSEKKEYECTECGKAFYNRTNLHVHRRTHSDERPHACTVCCKAFKGKGALDRHFRSHTGVKPYECEVCGKAFAQSNSRKLHVRTVHLKEPSPYISRSRLEKRNRHKEQPADYQLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-