Cpal017358.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- ZEB1_1
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000466.1:24711-36541[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0054 0.32 11.7 0.6 1 23 55 78 55 78 0.96 2 21 0.0054 0.32 11.7 0.6 1 23 126 149 126 149 0.96 3 21 0.0054 0.32 11.7 0.6 1 23 197 220 197 220 0.96 4 21 0.0054 0.32 11.7 0.6 1 23 268 291 268 291 0.96 5 21 0.0054 0.32 11.7 0.6 1 23 339 362 339 362 0.96 6 21 0.0054 0.32 11.7 0.6 1 23 410 433 410 433 0.96 7 21 0.0054 0.32 11.7 0.6 1 23 481 504 481 504 0.96 8 21 0.0054 0.32 11.7 0.6 1 23 552 575 552 575 0.96 9 21 0.0054 0.32 11.7 0.6 1 23 623 646 623 646 0.96 10 21 0.0054 0.32 11.7 0.6 1 23 694 717 694 717 0.96 11 21 0.0054 0.32 11.7 0.6 1 23 765 788 765 788 0.96 12 21 0.0054 0.32 11.7 0.6 1 23 836 859 836 859 0.96 13 21 0.0054 0.32 11.7 0.6 1 23 907 930 907 930 0.96 14 21 0.0054 0.32 11.7 0.6 1 23 978 1001 978 1001 0.96 15 21 0.0054 0.32 11.7 0.6 1 23 1049 1072 1049 1072 0.96 16 21 3.5 2e+02 2.8 0.0 3 23 1109 1129 1109 1129 0.94 17 21 0.00091 0.053 14.1 0.5 2 23 1136 1158 1135 1158 0.96 18 21 3.1e-05 0.0018 18.7 1.0 2 23 1183 1204 1182 1204 0.97 19 21 9.8e-06 0.00057 20.3 0.4 1 23 1210 1232 1210 1232 0.99 20 21 1.8e-05 0.001 19.5 1.9 1 23 1238 1260 1238 1260 0.94 21 21 3.5e-06 0.0002 21.7 2.6 1 23 1266 1289 1266 1289 0.98
Sequence Information
- Coding Sequence
- ATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGGTGAGTGCACCAGCCACCTGACCCACGTCCGCATGCACCACCCCACCAGCCACtcgtgcgagctgtgcggcgagTCCTTCATAGGGGAGTTCGGCCTGCGCATGCACAAGAAGCGCGCGCACCGGGGGCCGATGCAGTGCGAGTGCTCGGTGGAGTTCCACAGCATGGAGGCCCTGCGCAGACACCAGGGCTGCGCGGACAACGGACAGTGCGATCCTACACTGCTATGGTGCGGGCAGTGCGGGCTGGGCTTCCCCGCGGACGAGCAGCTGGTGGAGCACCTGGCGGCGCACCCGCGCGGCACCGTCGTCAGCTGCGACGACTGCCAACGGACCTTCGCGACGCAGCGGTCGTTCGACATCCACTACCAGCGCGTGCACCTCGGCGTGAAGATGAAGCAAGTTCGGCCGGCGTCGGGAGAACGGGTCAAGCGCAACCCCGGCCAGAACATAGTCTGCGAGGTCTGCGGGAAGAAGTGTGTTAACAAGGCGACGCTGCGCTACCACCAGCGCATCCACACGGGCGAGAAGCCGTTTGAGTGCCCGCAGTGCCCGAAGCGCTTCTCCGTGCTGCAGCGGCTGCAGATCCACATCCGCACGCACACGGGCGAGTCTCCGTACCAATGCAAGCAGTGCCCGAAGGCGTTCAAACACAAGGCCGCGTTGAACAGACACGACCGGGTCCACACGGGGGTGAAGCCCTACACGTGCTCCCACTGCGGCAAGTCCTTCTCTCAGTCCAACTCGATGAAGCTGCACGTGAACACCGTCCACCTCAAGCTGCCGGCGCCCTACCGCAGCCGGCGCAAGAACTAG
- Protein Sequence
- MHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPPLVRAVRRVLHRGVRPAHAQEARAPGAGECTSHLTHVRMHHPTSHSCELCGESFIGEFGLRMHKKRAHRGPMQCECSVEFHSMEALRRHQGCADNGQCDPTLLWCGQCGLGFPADEQLVEHLAAHPRGTVVSCDDCQRTFATQRSFDIHYQRVHLGVKMKQVRPASGERVKRNPGQNIVCEVCGKKCVNKATLRYHQRIHTGEKPFECPQCPKRFSVLQRLQIHIRTHTGESPYQCKQCPKAFKHKAALNRHDRVHTGVKPYTCSHCGKSFSQSNSMKLHVNTVHLKLPAPYRSRRKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -