Cpal001077.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000015.1:2080012-2091695[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.1 4.7e+02 1.7 3.9 1 21 10 31 10 32 0.86 2 17 1 61 4.5 0.2 1 10 213 222 213 233 0.91 3 17 1.5e-05 0.00087 19.7 1.0 1 23 392 414 392 414 0.98 4 17 3.9e-05 0.0023 18.4 1.1 1 23 429 451 429 451 0.98 5 17 2.2e-05 0.0013 19.2 2.3 2 23 504 525 503 525 0.96 6 17 0.0011 0.063 13.9 1.9 1 23 541 563 541 563 0.98 7 17 1.7e-06 0.0001 22.7 4.5 1 23 569 591 569 591 0.98 8 17 0.0073 0.43 11.3 8.7 1 23 597 619 597 619 0.97 9 17 2.4e-06 0.00014 22.3 0.4 1 23 625 647 625 647 0.98 10 17 0.00042 0.025 15.2 0.2 1 23 651 673 651 673 0.97 11 17 0.00071 0.042 14.5 0.0 1 23 681 704 681 704 0.96 12 17 0.00071 0.042 14.5 0.0 1 23 710 733 710 733 0.96 13 17 0.00071 0.042 14.5 0.0 1 23 739 762 739 762 0.96 14 17 0.00071 0.042 14.5 0.0 1 23 768 791 768 791 0.96 15 17 0.00071 0.042 14.5 0.0 1 23 797 820 797 820 0.96 16 17 0.00071 0.042 14.5 0.0 1 23 826 849 826 849 0.96 17 17 0.00071 0.042 14.5 0.0 1 23 855 878 855 878 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCCAAAACTGAAGATATGATTTTCCACTGCCCTCTATGTTGTAGAAAGGAATTTCATTCTAAAAAATCTCTTGCTGACCATTTGTCCAGCGTTGTTTTGAACTTGATTTGTCCTGTTTGTAATGTAAAGCATTCATCAATAGAAAGCCTGGCAGATCACTTAAATTGTGATGAGTGTGAGACCACCAACTCAAATGGGAATGACCAATTCCATAGTCAATCAGCAACAGAACTTACAGAACATGATAAAGTGTCAACAGATCAAGACGAAATTGTGACTGATATTGGAAATAATACCACAGGAATACAAGATAACATACCAAGTCAATTTGTAAAGTTACCACCAGAAAATATTATGgaagtaaataaatttgtacaGCTGCTTGATAAACAAATGCACAAGCCCTGTCTTGAGACGCAAGAATTCAAGTTTGTCCTTGAAGACAGAACTCGTCATTATGTTTATTTGCCTAATGAAGATGCTGAGCAAAGCTTATCAGAAAACACAATTGTCACTAAGCAAAATAATGATGGTACGATATCTCTAACATCTTTAaaagcACCCAAGTTAGAATCTAATCCATTGAGTGCAGCTTCTGATCTAGAATCTGATGAAAATCAAAAAGAAATATACACTTGCAACACATGTGGAGTGTCTTTTTTATCAGTTATTGATCATATACAGAACTTTCATAATGACCAAGATGTTGTTGTTGAGGAACCTTTAGATGACGCAGCAGCAGCAAATGATGAGGCTTCAAATATATCTGAAACCCATAGAACATTGGAAACAACAAGTCCTACAAATGATAAGCAAACATTGAGGCGCATGATTACTGAAACTGGAGACATCATAGAAACACCTTTAATCATGAAAGCCACAGAAGAGTCCAAAAATACATCTACCATTGCGCCCCTAGAATATGACGTACCAGTAATAGATGAGGCCCCTAAGCAGAAGCAAGcaggaaagaaagaaaatactaatcacaatgtCAAAAATAATGATGAAGATAAGAGTGGTCTTTATCACAAAGTGGTATTACAAGAACTGGTCACAAGTACAGGCAACAAAGTCAAGATTTACCACTGTATTATATGTAACATTTACGTGCCAACATTGGCGGAGTTTAAATCTCGGCCCTGTGCTATAGTGCAACCAAATAAATACGCATGTCCCCACTGCCCTGTCGTTTACGACAATTCTAAATCGCTTTGTGCACACATGAAAGTGCACAAGACCAAAGaaatCGTTTTCGATTccgtaattaaattaaattttgaatgtaCGATATGCAGCACAATTTTTCCAACGAGTAAATCGCTCAAACTGCATAAGAGGATGCATGATCCGATTAAGTCCCGTCCAATAGAGCCTCCAGTGCCCACTAAAGAGGGAGAATTGATGAGTGAAGACAAGTACATGTGCAGCATTTGCAACAAGCTCATACCCATAGACTATAGAGCTATACATCAAAACTCGCACATGAACAGCGATACACTGAACTGTCACATATGCAACAAGAAGTTTACGTCGCGAGAGTATCTTGATATGCATATGAATGTACATAATCTTGACAAAGTAGTGGTAGGTAAGCAGGACAAGTCGCTCCCCTACACTTGCGTGTACTGCAACCGGCAGTTTGCCCGGCCGCACGAAAAAGTCAAGCACGAAAGAATCCATACAGGAGAAAAGCCGCACTCATGTGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACCGGAGCGCGCCCCTACGCCTGCCACCACTGCGGCAAgagGTTCAAAGCGCACAGCGTATACAACCACCATCTGCTAACGCACTCCGAGGTGCGCGCGTACAAGTGTCCGTACTGCCCCAAAGCGTTCAAGACGTCCGTCCAGCTAGCAGGACACAAGAACTCCCACACCAAGCCCTTCTCTTGCCAGCAGTGCAATCGGCCTTTCGCGTCCCTATACGCGGTGCGCGTGCACATGGACAGCCACGCAAAAAGCAACAGCCTTAAGTTCGCGTGCTCGCTGTGCGGCGCCAGCTACGCGCGTGCCTTCGCGCTCAAGGACCACGTGCGGCAAGTGCACTCGGACCACTTGGAGTTCGCGTGCTCGCTGTGCGGCGCCAGCTACGCGCGTGCCTTCGCGCTCAAGGACCACGTGCGGCAAGTGCACTCGGACCACTTGGAGTTCGCGTGCTCGCTGTGCGGCGCCAGCTACGCGCGTGCCTTCGCGCTCAAGGACCACGTGCGGCAAGTGCACTCGGACCACTTGGAGTTCGCGTGTTCGCTGTGCGGCGCTAGCTACGCGCGTGCCTTCGCGCTCAAGGACCACGTGCGGCAAGTGCACTCGAACCACTTGGAGTTCGCGTGCTCGCTGTGCGGCGCCAGCTACGCGCGTGCCTTCGCGCTCAAGGACCACGTGCGGCAAGTGCACTCGGACCACTTGGAGTTCGCGTGCTCGCTGTGCGGCGCCAGCTACGCGCGTGCCTTCGCGCTCAAGGACCACGTGCGGCAAGTGCACTCGGACCACTTGGAGTTCGCGTGTTCGCTGTGCGGCGCCAGCTACGCGCGTGCCTTCGCGCTCAAGGACCACGTGCGGCAAGTGCACTCGGACCACTTGGAGTCGGCCCTCAAGCAGGAAGAATGGTCGTTACAAGATTGTGACGAAGACAAAGAAAGCATACAGCTCGTGGAAATACCAGATCAAGAAGTAAGTTTCTTGTAA
- Protein Sequence
- MSSKTEDMIFHCPLCCRKEFHSKKSLADHLSSVVLNLICPVCNVKHSSIESLADHLNCDECETTNSNGNDQFHSQSATELTEHDKVSTDQDEIVTDIGNNTTGIQDNIPSQFVKLPPENIMEVNKFVQLLDKQMHKPCLETQEFKFVLEDRTRHYVYLPNEDAEQSLSENTIVTKQNNDGTISLTSLKAPKLESNPLSAASDLESDENQKEIYTCNTCGVSFLSVIDHIQNFHNDQDVVVEEPLDDAAAANDEASNISETHRTLETTSPTNDKQTLRRMITETGDIIETPLIMKATEESKNTSTIAPLEYDVPVIDEAPKQKQAGKKENTNHNVKNNDEDKSGLYHKVVLQELVTSTGNKVKIYHCIICNIYVPTLAEFKSRPCAIVQPNKYACPHCPVVYDNSKSLCAHMKVHKTKEIVFDSVIKLNFECTICSTIFPTSKSLKLHKRMHDPIKSRPIEPPVPTKEGELMSEDKYMCSICNKLIPIDYRAIHQNSHMNSDTLNCHICNKKFTSREYLDMHMNVHNLDKVVVGKQDKSLPYTCVYCNRQFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACHHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMDSHAKSNSLKFACSLCGASYARAFALKDHVRQVHSDHLEFACSLCGASYARAFALKDHVRQVHSDHLEFACSLCGASYARAFALKDHVRQVHSDHLEFACSLCGASYARAFALKDHVRQVHSNHLEFACSLCGASYARAFALKDHVRQVHSDHLEFACSLCGASYARAFALKDHVRQVHSDHLEFACSLCGASYARAFALKDHVRQVHSDHLESALKQEEWSLQDCDEDKESIQLVEIPDQEVSFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -