Cpal002400.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Carterocephalus palaemon
Gene Symbol
-
Assembly
GCA_944567795.1
Location
CALYMS010000026.1:1466083-1498599[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.063 3.7 8.3 0.0 1 20 374 393 374 394 0.94
2 25 0.061 3.6 8.4 0.0 1 20 459 478 459 480 0.94
3 25 0.0018 0.1 13.2 0.2 1 23 514 536 514 536 0.97
4 25 0.13 7.5 7.4 4.5 1 23 552 574 552 574 0.94
5 25 2.3e-06 0.00014 22.3 2.9 1 23 580 602 580 602 0.98
6 25 4.8e-05 0.0028 18.1 3.0 1 23 609 631 609 631 0.99
7 25 1.2e-05 0.00068 20.1 0.1 1 23 637 659 637 659 0.93
8 25 1.5e-06 8.7e-05 22.9 0.0 1 23 665 687 665 687 0.98
9 25 7e-06 0.00041 20.8 1.8 1 23 693 716 693 716 0.96
10 25 0.0038 0.22 12.2 2.7 1 23 722 745 722 745 0.93
11 25 0.0008 0.047 14.3 1.3 2 23 752 773 751 773 0.97
12 25 0.0008 0.047 14.3 1.3 2 23 792 813 791 813 0.97
13 25 0.0008 0.047 14.3 1.3 2 23 832 853 831 853 0.97
14 25 0.0008 0.047 14.3 1.3 2 23 872 893 871 893 0.97
15 25 0.0008 0.047 14.3 1.3 2 23 912 933 911 933 0.97
16 25 0.0008 0.047 14.3 1.3 2 23 952 973 951 973 0.97
17 25 0.0008 0.047 14.3 1.3 2 23 992 1013 991 1013 0.97
18 25 0.0008 0.047 14.3 1.3 2 23 1032 1053 1031 1053 0.97
19 25 0.0008 0.047 14.3 1.3 2 23 1072 1093 1071 1093 0.97
20 25 3.7e-05 0.0022 18.5 1.1 1 23 1099 1121 1099 1121 0.97
21 25 0.0079 0.46 11.2 0.3 1 22 1127 1148 1127 1148 0.97
22 25 0.0079 0.46 11.2 0.3 1 22 1204 1225 1204 1225 0.97
23 25 0.0079 0.46 11.2 0.3 1 22 1281 1302 1281 1302 0.97
24 25 0.0079 0.46 11.2 0.3 1 22 1305 1326 1305 1326 0.97
25 25 0.0079 0.46 11.2 0.3 1 22 1382 1403 1382 1403 0.97

Sequence Information

Coding Sequence
ATGTCAACGCTCAATTTAAAAGTCACCGTCGGTTCATCAGTTCTCACACAGAGTATTAAAACAACCAACTCGCTTGGCAACAAGATGATAACTCTATCCAGCTCGAATCCCACGCAAAATTACGTTTTGGCGCCAAAACCTGAACAAGTTGACATAACCATAGACCCGAACATTCTATTGCAGACATCCATAGACACAACGAATAGTATGCCAACTTTGAGTTATACGAGCAATATATCATCTGCCTTGACGAAGACGAGTAATTCAGTGTTAAGTTTCAACGTGAAAGCGTTGCCAAAGGATTTTCTGTCTTCGGCGTTGCTGAATAAGGTTGATGTGTCAGAGTTTGGGGAGATTGAAGTGAATATGAAAAAGGAAAACAACGATGGTAGCGATGAGAATAACGATGAACAGCCTATGGAAATTGATGAAGATTGCTCCTTAGCTGTGGCAGTCGGTAGCAGTCAGGAGAAAACTGACCAGCAGAGTGAGCTGGATAAGTCCAAGGACTTCCTGGACAGCCTCCTGCCGGGGCTGACGGAGGATGGGGAGGATGGGGACGGAGATGGGGACTCCCCGTCTCTGCACGGCAAGTATATCGTCGGCAAGTTCGAGATACTCAACGGAAGGGACGACGAGCAGGATGGAGCCACCATAGTGATGGACGATGAAAACGGTTCGATCATACGTCTGGTGTCCGGTCAGAAGTATTTATACGGCGACAGCGAGATATCGATAGTGATGCCCGAGGACTCTGATCAGGACGACGCTGGCGACAACGGTGACAACCAAGattcatACGATGAATCGCAGATCGAGCTTCAAGTGTCAGGAGACGAGGAAACTGCCAATGCCATTATCGCTGCTGCTCAGGAACAAGGCGGtgcttttataaaaatagagTCAGGTGAAATGTACCGGGTTCAATCTGTGCAGAGCAAGACAGCGGGGGACTCGATAGTGGAACTGGAGCCATCCATTGGATCGATGGTGTCTCAACTGGACAATGGCCAGTTCAAATGCTTGCTCTGCGAAAATAATGACAAGAAAgTGGAATCGTTCACCGGCGACGCGTTGTCGACTACCCAGCACCTGAAGcgcgagcacgcggcgcgcgcgcacatcTGCCCGCGCTGCGGCCTCGtgctgcgccgccgcgcgcagtACGTCGCGCACCTCGCACCTGAAGcgcgagcacgcggcgcgcgcgcacatcTGCCCGCGCTGCGGCCTCGtggtgcgccgccgcgcgcagtACGTCGCGCACCTCGGTCAGTACGCCGCCCACGACTGtatgcccactgctgggcatcgtTCACCGGCGACGCGCTGTCGGCCACGCAGCACCTGAAGcgcgagcacgcggcgcgcgcgcacatcTGCCCGCGCTGCGGCCTCGtggtgcgccgccgcgcgcagtACGTCGCGCACCTCGGTCAGTACGCCGCCCACGACTgtctgtcccactgctgggcatcgtTCACCGGCGACGCGCTGTCGGCCACGCAGCACCTGAAGcgcgagcacgcggcgcgcgcgcacatcTGCCCGCGCTGCGGCCTCGtggtgcgccgccgcgcgcagtACGTCGCGCACCTCGAAACCCACAACACCGGTTCGAACTTGCAGCTATTTACGGACAAGCCCAAAGTACACAAATGCATTGTGTGCAACAAAAAATACAGttCTCGCACGCTCCTGACCGAACACTTGCATCTGCATACGGGCGACAAGCCGTACACGTGCGACGTGTGCCACAAATCTTTCGCCTCCAAGTACACGCTGCAGTCGCATCTTAAGATACACTTGGAGAGACCGCGGCCGTACAAATGCTCGCAGTGCGCGAAATCATTCTTCACGCAGCAAAACCTGAACCAGCACGAGAAGACTCACTCCGGTATCAAGGATTTCATCTGCAGCATTTGCGGCAAGGCGTTCGCGTCGCAACACAACCTGGAGGTGCACGGCGTGGTGCACTCCGGGAACAAGCCGTTCGTGTGCGGCGACTGCGGCAAGGCGTTCGCGCGCCGCGCGGAGGTGCGCGACCACATGCGGATACACACCGGCGAAAGGCCGTTTTCGTGCGACATATGCGGCGCGAGCTTCACCCAGCGCTCGAACCTGCACTCGCACAAGCGCGCCACGCACTTGGATGACAAGCGCTACCACTGCACGCTGTGCCCCAAACGGTTCAAGCGACGGAGATTACTGGACTACCACGTACAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGCTGTGCAGGGCGACGTTCGTGTACCCGGAGCATTTCAAGAAGCACGCGCGCATACACAGCGGGGAGAAGCCGTACGTGTGCGAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGCTGTGCAGGGCGACGTTCGTGTACCCGGAGCATTTCAAGAAGCACGCGCGCATACACAGCGGGGAGAAGCCGTACGTGTGCGAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGCTGTGCAGGGCGACGTTCGTGTACCCGGAGCATTTCAAGAAGCACGCGCGCATACACAGCGGGGAGAAGCCGTACGTGTGCGAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGCTGTGCAGGGCGACGTTCGTGTACCCGGAGCATTTCAAGAAGCACGCGCGCATACACAGCGGGGAGAAGCCGTACGTGTGCGAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGCTGTGCAGGGCGACGTTCGTGTACCCGGAGCATTTCAAGAAGCACGCGCGCATACACAGCGGGGAGAAGCCGTACGTGTGCGAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGCTGTGCAGGGCGACGTTCGTGTACCCGGAGCATTTCAAGAAGCACGCGCGCATACACAGCGGGGAGAAGCCGTACGTGTGCGAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGCTGTGCAGGGCGACGTTCGTGTACCCGGAGCATTTCAAGAAGCACGCGCGCATACACAGCGGGGAGAAGCCGTACGTGTGCGAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGCTGTGCAGGGCGACGTTCGTGTACCCGGAGCATTTCAAGAAGCACGCGCGCATACACAGCGGGGAGAAGCCGTACGTGTGCGAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGCTGTGCAGGGCGACGTTCGTGTACCCGGAGCATTTCAAGAAGCACGCGCGCATACACAGCGGGGAGAAGCCGTACGTGTGCGAGGTGTGCGGCAAAACGTTCAACTCGCGCGACAACCGCAACACGCACCGGTTCGTGCACAGCGACCGCAAGCCGTACGAGTGTCTGGTGTGCGGCGCGGGGTACATGCGCAAGCGGCTGCTCTACCACCACATGAACACCAGCCGACCGCAAGCCGTACGAGTGTCTGGTGTGCGGCGCGGGGTACATGCGCAAGCGGCTGCTCTACCACCACATGAACACCAGCGTGAGTCAATCAATCTATATACGTTCAACTGCCGCGACAACCGCAACACGCACCGGTTCGTGCACAGCGACCGCAAGCCGTACGAGTGTCTGGTGTGCGGCGCGGGGTACATGCGCAAGCGGCTGCTCTACCACCACATGAACACCAGCCGACCGCAAGCCGTACGAGTGTCTGGTGTGCGGCGCGGGGTACATGCGCAAGCGGCTGCTCTACCACCACATGAACACCAGCGTGAGTCAATCAATCTATATACGTTCAACTGCCGCGACAACCGCAACACGCACCGGTTCGTGCACAGCGACCGCAAGCCGTACGAGTGTCTGGTGTGCGGCGCGGGGTACATGCGCAAGCGGCTGCTCTACCACCACATGAACACCAGCCCGTACGAGTGTCTGGTGTGCGGCGCGGGGTACATGCGCAAGCGGCTGCTCTACCACCACATGAACACCAGCCGACCGCAAGCCGTACGAGTGTCTGGTGTGCGGCGCGGGGTACATGCGCAAGCGGCTGCTCTACCACCACATGAACACCAGCGTGAGTCAATCAATCTATATACGTTCAACTGCCGCGACAACCGCAACACGCACCGGTTCGTGCACAGCGACCGCAAGCCGTACGAGTGTCTGGTGTGCGGCGCGGGGTACATGCGCAAGCGGCTGCTCTACCACCACATGAACACCAGCGCAAGCGAGGAGCCGGCGTTGCTTACATTGCAAAACGCAGACGGCTTCAAGACGGACGGAACTATATTGGAGGGTATCACCGCGGAACAGCTGGAGCAGGCTCAGataatGAGTAACGATGTTTCGGGCGGATCTCTTCGTCTCGTACAGATTCAGCTTCCTGACGGAAATAATGGCTGGCTTGCGATCAACCAGTGA
Protein Sequence
MSTLNLKVTVGSSVLTQSIKTTNSLGNKMITLSSSNPTQNYVLAPKPEQVDITIDPNILLQTSIDTTNSMPTLSYTSNISSALTKTSNSVLSFNVKALPKDFLSSALLNKVDVSEFGEIEVNMKKENNDGSDENNDEQPMEIDEDCSLAVAVGSSQEKTDQQSELDKSKDFLDSLLPGLTEDGEDGDGDGDSPSLHGKYIVGKFEILNGRDDEQDGATIVMDDENGSIIRLVSGQKYLYGDSEISIVMPEDSDQDDAGDNGDNQDSYDESQIELQVSGDEETANAIIAAAQEQGGAFIKIESGEMYRVQSVQSKTAGDSIVELEPSIGSMVSQLDNGQFKCLLCENNDKKVESFTGDALSTTQHLKREHAARAHICPRCGLVLRRRAQYVAHLAPEARARGARAHLPALRPRGAPPRAVRRAPRSVRRPRLYAHCWASFTGDALSATQHLKREHAARAHICPRCGLVVRRRAQYVAHLGQYAAHDCLSHCWASFTGDALSATQHLKREHAARAHICPRCGLVVRRRAQYVAHLETHNTGSNLQLFTDKPKVHKCIVCNKKYSSRTLLTEHLHLHTGDKPYTCDVCHKSFASKYTLQSHLKIHLERPRPYKCSQCAKSFFTQQNLNQHEKTHSGIKDFICSICGKAFASQHNLEVHGVVHSGNKPFVCGDCGKAFARRAEVRDHMRIHTGERPFSCDICGASFTQRSNLHSHKRATHLDDKRYHCTLCPKRFKRRRLLDYHVQASHTGERPLKCELCRATFVYPEHFKKHARIHSGEKPYVCEASHTGERPLKCELCRATFVYPEHFKKHARIHSGEKPYVCEASHTGERPLKCELCRATFVYPEHFKKHARIHSGEKPYVCEASHTGERPLKCELCRATFVYPEHFKKHARIHSGEKPYVCEASHTGERPLKCELCRATFVYPEHFKKHARIHSGEKPYVCEASHTGERPLKCELCRATFVYPEHFKKHARIHSGEKPYVCEASHTGERPLKCELCRATFVYPEHFKKHARIHSGEKPYVCEASHTGERPLKCELCRATFVYPEHFKKHARIHSGEKPYVCEASHTGERPLKCELCRATFVYPEHFKKHARIHSGEKPYVCEVCGKTFNSRDNRNTHRFVHSDRKPYECLVCGAGYMRKRLLYHHMNTSRPQAVRVSGVRRGVHAQAAALPPHEHQRESINLYTFNCRDNRNTHRFVHSDRKPYECLVCGAGYMRKRLLYHHMNTSRPQAVRVSGVRRGVHAQAAALPPHEHQRESINLYTFNCRDNRNTHRFVHSDRKPYECLVCGAGYMRKRLLYHHMNTSPYECLVCGAGYMRKRLLYHHMNTSRPQAVRVSGVRRGVHAQAAALPPHEHQRESINLYTFNCRDNRNTHRFVHSDRKPYECLVCGAGYMRKRLLYHHMNTSASEEPALLTLQNADGFKTDGTILEGITAEQLEQAQIMSNDVSGGSLRLVQIQLPDGNNGWLAINQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-