Cpal005218.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000059.1:448116-458851[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 1.1 66 4.4 5.8 1 23 140 162 140 162 0.92 2 35 1.1 66 4.4 5.8 1 23 182 204 182 204 0.92 3 35 1.1 66 4.4 5.8 1 23 224 246 224 246 0.92 4 35 1.1 66 4.4 5.8 1 23 266 288 266 288 0.92 5 35 1.1 66 4.4 5.8 1 23 329 351 329 351 0.92 6 35 1.1 66 4.4 5.8 1 23 392 414 392 414 0.92 7 35 1.1 66 4.4 5.8 1 23 455 477 455 477 0.92 8 35 1.1 66 4.4 5.8 1 23 518 540 518 540 0.92 9 35 1.1 66 4.4 5.8 1 23 581 603 581 603 0.92 10 35 1.1 66 4.4 5.8 1 23 644 666 644 666 0.92 11 35 0.0012 0.072 13.7 0.1 2 23 738 759 737 759 0.95 12 35 0.0012 0.072 13.7 0.1 2 23 803 824 802 824 0.95 13 35 8.8e-05 0.0051 17.3 0.4 1 22 828 849 828 849 0.96 14 35 0.0012 0.072 13.7 0.1 2 23 854 875 853 875 0.95 15 35 0.00029 0.017 15.7 0.4 1 22 879 900 879 900 0.96 16 35 0.0012 0.072 13.7 0.1 2 23 905 926 904 926 0.95 17 35 0.00029 0.017 15.7 0.4 1 22 930 951 930 951 0.96 18 35 0.0012 0.072 13.7 0.1 2 23 956 977 955 977 0.95 19 35 0.00029 0.017 15.7 0.4 1 22 981 1002 981 1002 0.96 20 35 0.0012 0.072 13.7 0.1 2 23 1007 1028 1006 1028 0.95 21 35 8.8e-05 0.0051 17.3 0.4 1 22 1032 1053 1032 1053 0.96 22 35 0.0012 0.072 13.7 0.1 2 23 1058 1079 1057 1079 0.95 23 35 0.00029 0.017 15.7 0.4 1 22 1083 1104 1083 1104 0.96 24 35 0.0012 0.072 13.7 0.1 2 23 1109 1130 1108 1130 0.95 25 35 0.00029 0.017 15.7 0.4 1 22 1134 1155 1134 1155 0.96 26 35 0.0012 0.072 13.7 0.1 2 23 1160 1181 1159 1181 0.95 27 35 0.00011 0.0064 17.0 0.7 1 22 1185 1206 1185 1206 0.96 28 35 0.0012 0.072 13.7 0.1 2 23 1211 1232 1210 1232 0.95 29 35 1.3e-05 0.00075 19.9 1.7 1 23 1236 1258 1236 1258 0.99 30 35 0.011 0.63 10.7 0.6 1 21 1266 1286 1266 1289 0.83 31 35 0.17 9.7 7.0 0.4 1 23 1295 1318 1295 1318 0.93 32 35 0.0019 0.11 13.1 0.6 1 23 1324 1347 1324 1347 0.98 33 35 0.00037 0.022 15.3 0.6 1 23 1353 1375 1353 1375 0.96 34 35 0.00021 0.012 16.1 0.4 1 23 1381 1403 1381 1403 0.97 35 35 0.0055 0.32 11.6 0.4 1 23 1409 1432 1409 1432 0.97
Sequence Information
- Coding Sequence
- ATGAAGAGCGAGATGGAAGTAGAACTGAAAGTGGAGAGGCAAGATACAGACAATAACAATGACGGAGAGAGCGGCTGCGATGCTGATGACTGGCCTGTGGTGGAGAGCGAAAGCACTGCACGCAGAAGCGAGACAGAGCCTTCGAAGAGAACCTCTCCCCGGAGGAAGGTTAAGGAGAAGCGGACGGCCAGCAAGAAGTCCCGGGATCATTCCCCGGCGAGGCAGGACATGCTGGCGAGCATGAGGCGTACTAAGGAGAAGCTGAAGAAGGCCTTGAGAAATGAGAAATCCACCAATCCGGAGATAGTCCGCGTAGAGGGCGCCACGCGCGTCCTGAAGATGACCAGGGCGTTCGCGAACACCATCACCGTGGTGGAGGGCTCGTACGCGTGCCCCTTCCTCTCCGTGTTCAACACGTTCTACTGCGAGTACTGCCGCCGGCGGTTCCCCGAGCACCGGCTGCTGCGGGACCACTGCCGGGACCACGACCCCGCCACCTTCAAGGGCTCGTACGCGTGCCCCTTCCTCTCCGTGTTCAACACGTTCTACTGCGAGTACTGCCGCCGGCGGTTCCCCGAGCACCGGCTGCTGCGGGACCACTGCCGGGACCACGACCCCGCCACCTTCAAGGGCTCGTACGCGTGCCCCTTCCTCTCCGTGTTCAACACGTTCTACTGCGAGTACTGCCGCCGGCGGTTCCCCGAGCACCGGCTGCTGCGGGACCACTGCCGGGACCACGACCCCGCCACCTTCAAGGGCTCGTACGCGTGCCCCTTCCTCTCCGTGTTCAACACGTTCTACTGCGAGTACTGCCGCCGGCGGTTCCCCGAGCACCGGCTGCTGCGGGACCACTGCCGGGACCACGACCCCGCCACCTTCAAGGTGAGGGATACTCCTCGACTGGCTGCTGGGTTCAGGGGTGCGAACACCATCACCGTGGTGGAGGGCTCGTACGCGTGCCCCTTCCTCTCCGTGTTCAACACGTTCTACTGCGAGTACTGCCGCCGGCGGTTCCCCGAGCACCGGCTGCTGCGGGACCACTGCCGGGACCACGACCCCGCCACCTTCAAGGTGAGGGATACTCCTCGACTGGCTGCTGGGTTCAGGGGTGCGAACACCATCACCGTGGTGGAGGGCTCGTACGCGTGCCCCTTCCTCTCCGTGTTCAACACGTTCTACTGCGAGTACTGCCGCCGGCGGTTCCCCGAGCACCGGCTGCTGCGGGACCACTGCCGGGACCACGACCCCGCCACCTTCAAGGTGAGGGATACTCCTCGACTGGCTGCTGGGTTCAGGGGTGCGAACACCATCACCGTGGTGGAGGGCTCGTACGCGTGCCCCTTCCTCTCCGTGTTCAACACGTTCTACTGCGAGTACTGCCGCCGGCGGTTCCCCGAGCACCGGCTGCTGCGGGACCACTGCCGGGACCACGACCCCGCCACCTTCAAGGTGAGGGATACTCCTCGACTGGCTGCTGGGTTCAGGGGTGCGAACACCATCACCGTGGTGGAGGGCTCGTACGCGTGCCCCTTCCTCTCCGTGTTCAACACGTTCTACTGCGAGTACTGCCGCCGGCGGTTCCCCGAGCACCGGCTGCTGCGGGACCACTGCCGGGACCACGACCCCGCCACCTTCAAGGTGAGGGATACTCCTCGACTGGCTGCTGGGTTCAGGGGTGCGAACACCATCACCGTGGTGGAGGGCTCGTACGCGTGCCCCTTCCTCTCCGTGTTCAACACGTTCTACTGCGAGTACTGCCGCCGGCGGTTCCCCGAGCACCGGCTGCTGCGGGACCACTGCCGGGACCACGACCCCGCCACCTTCAAGGTGAGGGATACTCCTCGACTGGCTGCTGGGTTCAGGGGTGCGAACACCATCACCGTGGTGGAGGGCTCGTACGCGTGCCCCTTCCTCTCCGTGTTCAACACGTTCTACTGCGAGTACTGCCGCCGGCGGTTCCCCGAGCACCGGCTGCTGCGGGACCACTGCCGGGACCACGACCCCGCCACCTTCAAGGACGCCATAGTGGACAGCATGAGACGGCTCGGCCGAAAGAAGACTCAACTCGACATCCAACGCATAGACTGCCGGCTGTGCCCAGAGCGAATAGACGACATAGAGCGGCTCAAGgAGCACCTGGCTAATGTGCACGGCAAGACCATATACCCGGTCGCCGACGAGTTCCTGCAGTTCAGGGTGACGGAGCAGCTGGAGTGCGCGGAGTGCGGGCGCGGCTTCCGGCTGTTCCAGGCGCTGAAGAAGCACATGGCGGAGCACTTCGGCACCTACACCTGCCACGTGCGGCGCGAGCTTCTTCAACGAGGCCTACTTGACCTCGCACCAGAGGTGATACATTTATACCCGGTCGCCGACGAGTTGCTACAGTTCAGGGTGACGGAGCAGCTGGAGTGCGCGGAGTGCGGGCGCGGCTTCCGGCTGTTCCAGGCGCTGAAGAAGCACATGGCGGAGCACTTCGGCACCTACACCTGCCACGTGTGCGGCGCGAGCTTCTTCAACGAGGCCTACTTGACCTCGCACCAGAGGGTGACGGAGCAGCTGGAGTGCGCGGAGTGCGGGCGCGGCTTCCGGCTGTTCCAGGCGCTGAAGAAGCACATGGCGGAGCACTTCGGCACCTACACCTGCCACGTGTGCGGCGCGAGCTTCTTCAACGAGACATACCTCGTCTCGCACCAGAGGGTGACGGAGCAGCTGGAGTGCGCGGAGTGCGGGCGCGGCTTCCGGCTGTTCCAGGCGCTGAAGAAGCACATGGCGGAGCACTTCGGCACCTACACCTGCCACGTGTGCGGCGCGAGCTTCTTCAACGAGACATACCTCGTCTCGCACCAGAGGGTGACGGAGCAGCTGGAGTGCGCGGAGTGCGGGCGCGGCTTCCGGCTGTTCCAGGCGCTGAAGAAGCACATGGCGGAGCACTTCGGCACCTACACCTGCCACGTGTGCGGCGCGAGCTTCTTCAACGAGACATACCTCGTCTCGCACCAGAGGGTGACGGAGCAGCTGGAGTGCGCGGAGTGCGGGCGCGGCTTCCGGCTGTTCCAGGCGCTGAAGAAGCACATGGCGGAGCACTTCGGCACCTACACCTGCCACGTGTGCGGCGCGAGCTTCTTCAACGAGGCCTACTTGACCTCGCACCAGAGGGTGACGGAGCAGCTGGAGTGCGCGGAGTGCGGGCGCGGCTTCCGGCTGTTCCAGGCGCTGAAGAAGCACATGGCTGAGCACTTCGGCACCTACACCTGCCACGTGTGCGGCGCGAGCTTCTTCAACGAGACATACCTCGTCTCGCACCAGAGGGTGACGGAGCAGCTGGAGTGCGCGGAGTGCGGGCGCGGCTTCCGGCTGTTCCAGGCGCTGAAGAAGCACATGGCGGAGCACTTCGGCACCTACACCTGCCACGTGTGCGGCGCGAGCTTCTTCAACGAGACATACCTCGTCTCGCACCAGAGGGTGACGGAGCAGCTGGAGTGCGCGGAGTGCGGGCGCGGCTTCCGGCTGTTCCAGGCGCTGAAGAAGCACATGGCGGAGCACTTCGGCACCTACACCTGCCACGTGTGCGGCGCGAGCTTCTTCAACGAGACATACTTGACCTCGCACCAGAGGGTGACGGAGCAGCTGGAGTGCGCGGAGTGCGGGCGCGGCTTCCGGCTGTTCCAGGCGCTGAAGAAGCACATGGCGGAGCACTTCGGCACCTACACCTGCCACGTGTGCGGCGCGAGCTTCTTCAACGAGGCCTACTTGACCTCGCACCAGAGAAGCCACGACGACGCCAAGCCGGTGCTGTTCACGTGCGAGGAGTGCGGGCGCTCGTTCAAGCTGAAGTACAGCCGCGACATGCACGTGGCGCTGcgccaccgccgccagccgGCGTTCGAGTGCGTGAAGTGCGACGACGCGTTCTACTCGAGCAGGCAGCGCTTCAAGCACATGGCGGCCGCGCACGGCGAGCGCTGCACGTACCGCTGCGGCCGCTGCGAGCGCGTCTACGACAGCAGGAAGACGCTGCTGGACCACGTGCGCCGGATACACGTCAAGACGCTGAAGCACAAGTGCGAGGTGTGCGAGCGGCGGTTCTACCTGCCGTCGATGCTGCGCGAGCACATGGCGGCGCACACCGGCGAGCGCGGCTACCGCTGCGTGCAGTGCGACAAGACCTACCCGCGGATGAAGGCGCTCAAGGTGCACCTGCAGGCGCACGCGGCGGTGAAGCGCCACCAGTGCCCGCTGTGCAGCGCCTCGTACGGGCAGCGCGTCAGCCTGCAGGGCCACCTCAAgcgtgcgcacgcgcagcccgcAGCCACCGGCTAG
- Protein Sequence
- MKSEMEVELKVERQDTDNNNDGESGCDADDWPVVESESTARRSETEPSKRTSPRRKVKEKRTASKKSRDHSPARQDMLASMRRTKEKLKKALRNEKSTNPEIVRVEGATRVLKMTRAFANTITVVEGSYACPFLSVFNTFYCEYCRRRFPEHRLLRDHCRDHDPATFKGSYACPFLSVFNTFYCEYCRRRFPEHRLLRDHCRDHDPATFKGSYACPFLSVFNTFYCEYCRRRFPEHRLLRDHCRDHDPATFKGSYACPFLSVFNTFYCEYCRRRFPEHRLLRDHCRDHDPATFKVRDTPRLAAGFRGANTITVVEGSYACPFLSVFNTFYCEYCRRRFPEHRLLRDHCRDHDPATFKVRDTPRLAAGFRGANTITVVEGSYACPFLSVFNTFYCEYCRRRFPEHRLLRDHCRDHDPATFKVRDTPRLAAGFRGANTITVVEGSYACPFLSVFNTFYCEYCRRRFPEHRLLRDHCRDHDPATFKVRDTPRLAAGFRGANTITVVEGSYACPFLSVFNTFYCEYCRRRFPEHRLLRDHCRDHDPATFKVRDTPRLAAGFRGANTITVVEGSYACPFLSVFNTFYCEYCRRRFPEHRLLRDHCRDHDPATFKVRDTPRLAAGFRGANTITVVEGSYACPFLSVFNTFYCEYCRRRFPEHRLLRDHCRDHDPATFKDAIVDSMRRLGRKKTQLDIQRIDCRLCPERIDDIERLKEHLANVHGKTIYPVADEFLQFRVTEQLECAECGRGFRLFQALKKHMAEHFGTYTCHVRRELLQRGLLDLAPEVIHLYPVADELLQFRVTEQLECAECGRGFRLFQALKKHMAEHFGTYTCHVCGASFFNEAYLTSHQRVTEQLECAECGRGFRLFQALKKHMAEHFGTYTCHVCGASFFNETYLVSHQRVTEQLECAECGRGFRLFQALKKHMAEHFGTYTCHVCGASFFNETYLVSHQRVTEQLECAECGRGFRLFQALKKHMAEHFGTYTCHVCGASFFNETYLVSHQRVTEQLECAECGRGFRLFQALKKHMAEHFGTYTCHVCGASFFNEAYLTSHQRVTEQLECAECGRGFRLFQALKKHMAEHFGTYTCHVCGASFFNETYLVSHQRVTEQLECAECGRGFRLFQALKKHMAEHFGTYTCHVCGASFFNETYLVSHQRVTEQLECAECGRGFRLFQALKKHMAEHFGTYTCHVCGASFFNETYLTSHQRVTEQLECAECGRGFRLFQALKKHMAEHFGTYTCHVCGASFFNEAYLTSHQRSHDDAKPVLFTCEECGRSFKLKYSRDMHVALRHRRQPAFECVKCDDAFYSSRQRFKHMAAAHGERCTYRCGRCERVYDSRKTLLDHVRRIHVKTLKHKCEVCERRFYLPSMLREHMAAHTGERGYRCVQCDKTYPRMKALKVHLQAHAAVKRHQCPLCSASYGQRVSLQGHLKRAHAQPAATG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -